mRNA_P-wetherbeei_contig1821.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1821.2.1
Unique NamemRNA_P-wetherbeei_contig1821.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1821.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1821contigP-wetherbeei_contig1821:4102..5586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1243
Hectar predicted targeting categoryother localisation
Exons2
Cds size630
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.4639835-UTR-P-wetherbeei_contig1821:4101..45431683186139.4639835-UTR-P-wetherbeei_contig1821:4101..4543Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1821 4102..4543 -
1683186139.4861069-UTR-P-wetherbeei_contig1821:5173..52561683186139.4861069-UTR-P-wetherbeei_contig1821:5173..5256Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1821 5174..5256 -
1683186139.501763-UTR-P-wetherbeei_contig1821:5498..55861683186139.501763-UTR-P-wetherbeei_contig1821:5498..5586Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1821 5499..5586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.473954-CDS-P-wetherbeei_contig1821:4543..51731683186139.473954-CDS-P-wetherbeei_contig1821:4543..5173Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1821 4544..5173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1821.2.1prot_P-wetherbeei_contig1821.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1821 4544..5173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1821.2.1

>prot_P-wetherbeei_contig1821.2.1 ID=prot_P-wetherbeei_contig1821.2.1|Name=mRNA_P-wetherbeei_contig1821.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=210bp
MPQRAGTCCSAAEDAHIQRRQTPRKLHVALNATACRLLLQILLCHPCNTR
SAPYVSDFKTVDLLGLLRRFSLGLRPRCHRKDQALQSEHLSPVLILTFSM
NIWTKDKAETSGRRFPNWQDRCVMYNVCVSFAFSSRFAVCGGGGGTGSGG
IGGSGCGCGGGSNGVAAWRQLQTARRRRRWWRRRRRSEAAAAATAAAAAV
IAERHVHRR*
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mRNA from alignment at P-wetherbeei_contig1821:4102..5586-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1821.2.1 ID=mRNA_P-wetherbeei_contig1821.2.1|Name=mRNA_P-wetherbeei_contig1821.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1485bp|location=Sequence derived from alignment at P-wetherbeei_contig1821:4102..5586- (Phaeothamnion wetherbeei SAG_119_79)
TGCGGCAGTGAAAAACGAGAGCGGTGAGCGGCTCTGGAAATGCTACAGGA
CGCAATGCTGCGTCGTGTGCTTGCGCATCTTGGTCGAGGTCAGGACAAAA
CTTCTTCTCCCTTTTCAAGTTTCCGCAAAGTGTCATTGCTCCCTTACTTT
TCTTTTCTTTTCTTTTCCTTTCTTGTGTTTTTACTAACAAAGGGGAGCCT
CGGAGAACTATCCGCCTCGCGCTTCCCCTCTGCTTCCCTTACTTGGCACT
CTTTTCGCCTTACTTCATCAACACCACTTGTCAATGTGCAACGTTGTGTC
CCTCGCCAACGGGCCCATCGCTTTGTACAGACGAATCGGCTCCGAGGCTC
CGTGCCGAAACCTCTTCGGCACGGCGACAGTCTTCTGCTAAGGTAGACCG
AGGATGAGATGGGATGCCCCAGAGGGCAGGCACATGCTGCAGCGCCGCCG
AGGATGCGCACATCCAACGGCGACAGACGCCGAGAAAGTTGCATGTGGCG
CTGAACGCGACGGCGTGCAGACTGTTGCTCCAGATTCTTTTGTGCCACCC
GTGCAACACCCGTTCAGCGCCATACGTGAGCGATTTCAAAACTGTTGACC
TGCTCGGACTTTTACGACGCTTTTCTCTCGGCCTGCGACCTCGCTGTCAC
CGAAAAGATCAAGCTCTGCAAAGCGAACATTTATCACCAGTTCTGATTCT
GACCTTTTCCATGAATATCTGGACAAAGGACAAGGCTGAAACCTCCGGCA
GGCGTTTCCCAAACTGGCAAGACAGGTGCGTGATGTATAATGTGTGTGTT
TCTTTCGCATTTAGTTCTCGGTTTGCGGTTTGCGGCGGCGGCGGCGGCAC
CGGCAGCGGCGGCATCGGCGGCAGCGGTTGCGGCTGTGGTGGCGGCAGCA
ACGGCGTGGCGGCGTGGCGGCAGCTGCAGACTGCGCGGCGTCGACGTCGT
TGGTGGAGGCGGCGGCGGCGGAGCGAGGCAGCGGCAGCTGCTACGGCGGC
GGCGGCAGCGGTGATTGCAGAACGACACGTCCACCGGCGGTGACGGGGCC
CGCGGCGGTGGTGGTGGCGGCGCCGGGTTCCAAGTGCTGGCTAGCTGACC
GGCTGACGTATCTGTCGAACATTGGCTTGAGAAGCGATGGTGACGGCTGT
CGCATTGCGGTGAACTGTCTACGTGCCTGCATCGGCGGCGGGCGGGCCAT
TGAGATGGCCGACTGGCGTCAATTTCGACGGTGGCAGGCAGCAATGGCAG
TAGTTGGTGCTGCGGGAATTGCCAGGAAATAACTTTTAGGGAGGTCCGTG
GTTCACTTTCTTTGGGCCTTTTCTTTGGTGCTTGGGCCCACGGGGTAGAG
AAACCCGTCAAAACGGGTGGCCGTTGCATAGCTTAAGCATGAGGTGCCAC
ATGCCGGGTATGCAGAAGAGCGACGTGCAATGTCAGGCAATTATTGACTG
CTTAATCGAACCAAGCCGATTTGGGCTGAGCGAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1821:4102..5586-

>mRNA_P-wetherbeei_contig1821.2.1 ID=mRNA_P-wetherbeei_contig1821.2.1|Name=mRNA_P-wetherbeei_contig1821.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=630bp|location=Sequence derived from alignment at P-wetherbeei_contig1821:4102..5586- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCCAGAGGGCAGGCACATGCTGCAGCGCCGCCGAGGATGCGCACAT
CCAACGGCGACAGACGCCGAGAAAGTTGCATGTGGCGCTGAACGCGACGG
CGTGCAGACTGTTGCTCCAGATTCTTTTGTGCCACCCGTGCAACACCCGT
TCAGCGCCATACGTGAGCGATTTCAAAACTGTTGACCTGCTCGGACTTTT
ACGACGCTTTTCTCTCGGCCTGCGACCTCGCTGTCACCGAAAAGATCAAG
CTCTGCAAAGCGAACATTTATCACCAGTTCTGATTCTGACCTTTTCCATG
AATATCTGGACAAAGGACAAGGCTGAAACCTCCGGCAGGCGTTTCCCAAA
CTGGCAAGACAGGTGCGTGATGTATAATGTGTGTGTTTCTTTCGCATTTA
GTTCTCGGTTTGCGGTTTGCGGCGGCGGCGGCGGCACCGGCAGCGGCGGC
ATCGGCGGCAGCGGTTGCGGCTGTGGTGGCGGCAGCAACGGCGTGGCGGC
GTGGCGGCAGCTGCAGACTGCGCGGCGTCGACGTCGTTGGTGGAGGCGGC
GGCGGCGGAGCGAGGCAGCGGCAGCTGCTACGGCGGCGGCGGCAGCGGTG
ATTGCAGAACGACACGTCCACCGGCGGTGA
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