mRNA_P-wetherbeei_contig18209.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18209.1.1
Unique NamemRNA_P-wetherbeei_contig18209.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18209.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18209contigP-wetherbeei_contig18209:392..946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size435
Hectar predicted targeting categorysignal peptide
Exons2
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.404798-CDS-P-wetherbeei_contig18209:391..5571683186139.404798-CDS-P-wetherbeei_contig18209:391..557Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18209 392..557 -
1683186139.4145966-CDS-P-wetherbeei_contig18209:677..9071683186139.4145966-CDS-P-wetherbeei_contig18209:677..907Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18209 678..907 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.4314723-UTR-P-wetherbeei_contig18209:907..9461683186139.4314723-UTR-P-wetherbeei_contig18209:907..946Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18209 908..946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18209.1.1prot_P-wetherbeei_contig18209.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18209 392..907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18209.1.1

>prot_P-wetherbeei_contig18209.1.1 ID=prot_P-wetherbeei_contig18209.1.1|Name=mRNA_P-wetherbeei_contig18209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
MRLFLVFQLSISCFAAGFLPLSSGTHPCLSIEAEADALVDPSACTPTPVR
WKVSANANAFFRTRPLDVIVVIDGSGSVNWSWQNQSYSLDNYALEHGFAI
KLAAAFSKSMPLSSLGYVEFSSKINSYKLFSA
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mRNA from alignment at P-wetherbeei_contig18209:392..946-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18209.1.1 ID=mRNA_P-wetherbeei_contig18209.1.1|Name=mRNA_P-wetherbeei_contig18209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=555bp|location=Sequence derived from alignment at P-wetherbeei_contig18209:392..946- (Phaeothamnion wetherbeei SAG_119_79)
CGTGGACCGATGATGCATTAGGAAGAAAGGCTATTAAGAATGCGACTCTT
TCTCGTGTTCCAACTGTCAATCAGCTGCTTTGCTGCAGGATTCCTTCCCC
TGTCCTCCGGTACTCATCCGTGTCTCTCGATCGAGGCGGAGGCCGACGCG
TTAGTTGACCCGAGCGCCTGCACACCAACGCCAGTCAGATGGAAAGTCTC
GGCAAACGCAAATGCTTTCTTCAGAACACGACCACTGGACGTGATTGTCG
TCATTGACGGCTCTGGGAGGTGAGCTCCTTCGCGTCCCTTCGCGTGCCCA
CTCCCCTCTCCCCCTTCATGACATCCTATTCTCAAGCATTTGTTTCCTTT
TTCTATGATCTATTACCCTCTGTTGTCTTCTTGAAGCAGCGTCAACTGGA
GCTGGCAAAATCAGTCATACTCCTTGGACAACTATGCGCTCGAGCATGGC
TTCGCCATCAAACTTGCGGCCGCGTTCTCAAAGAGTATGCCGCTGTCCTC
GCTGGGGTACGTCGAGTTCTCGAGCAAAATAAACAGCTACAAGCTCTTCT
CGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18209:392..946-

>mRNA_P-wetherbeei_contig18209.1.1 ID=mRNA_P-wetherbeei_contig18209.1.1|Name=mRNA_P-wetherbeei_contig18209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig18209:392..946- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGACTCTTTCTCGTGTTCCAACTGTCAATCAGCTGCTTTGCTGCAGG
ATTCCTTCCCCTGTCCTCCGGTACTCATCCGTGTCTCTCGATCGAGGCGG
AGGCCGACGCGTTAGTTGACCCGAGCGCCTGCACACCAACGCCAGTCAGA
TGGAAAGTCTCGGCAAACGCAAATGCTTTCTTCAGAACACGACCACTGGA
CGTGATTGTCGTCATTGACGGCTCTGGGAGCGTCAACTGGAGCTGGCAAA
ATCAGTCATACTCCTTGGACAACTATGCGCTCGAGCATGGCTTCGCCATC
AAACTTGCGGCCGCGTTCTCAAAGAGTATGCCGCTGTCCTCGCTGGGGTA
CGTCGAGTTCTCGAGCAAAATAAACAGCTACAAGCTCTTCTCGGCC
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