mRNA_P-wetherbeei_contig18206.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18206.1.1
Unique NamemRNA_P-wetherbeei_contig18206.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18206.1.1 vs. uniprot
Match: D7FWE1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE1_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 7.820e-33
Identity = 62/89 (69.66%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    4 TVRDVAIVPTRRWGGQGMLGVTIRFDSYHNADENLVRVLAVSTGGPAQIAGLRPETDYLLGTAEKVFKDPEVLQAELLAHLEQ-VSFSV 267
            T RDV I P+  WGGQGMLGVTIRFD+YHNAD+NLVRVL V  G P+ IAGL+PE DYLLGTAE+VFKDP++L  E+ AHL+Q +SF V
Sbjct:   76 TTRDVTITPSSSWGGQGMLGVTIRFDTYHNADDNLVRVLEVVPGSPSHIAGLQPEHDYLLGTAERVFKDPDILFEEVTAHLDQPMSFYV 164
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BLAST of mRNA_P-wetherbeei_contig18206.1.1 vs. uniprot
Match: A0A7S2Y0B4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0B4_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.190e-29
Identity = 56/84 (66.67%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:    1 QTVRDVAIVPTRRWGGQGMLGVTIRFDSYHNADENLVRVLAVSTGGPAQIAGLRPETDYLLGTAEKVFKDPEVLQAELLAHLEQ 252
            +T RDV IVP++ W GQGMLGVTIRFD+Y+NADEN+VRVL V  G PA IAGL+ E DY+LGTAEK FKDP+ L  E+  HL+Q
Sbjct:   75 ETTRDVVIVPSKNWPGQGMLGVTIRFDTYYNADENVVRVLDVVPGSPANIAGLKAEQDYILGTAEKAFKDPDHLIEEVKVHLDQ 158
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BLAST of mRNA_P-wetherbeei_contig18206.1.1 vs. uniprot
Match: A0A7S2CUT3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUT3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.150e-27
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    1 QTVRDVAIVPTRRWGGQGMLGVTIRFDSYHNADENLVRVLAVSTGGPAQIAGLRPETDYLLGTAEKVFKDPEVLQAELLAHLE 249
            +T RDV I P R WGGQGMLGVTIRFDS+  A+E+LVRVL V    PA++AGL+ E DYLLGTAEKVFKD + L  E+  +LE
Sbjct:   75 ETTRDVVITPKRNWGGQGMLGVTIRFDSFWRAEESLVRVLEVVPDSPAELAGLKAEDDYLLGTAEKVFKDTDTLYEEVQKYLE 157
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BLAST of mRNA_P-wetherbeei_contig18206.1.1 vs. uniprot
Match: A0A7S2WEH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEH5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.570e-26
Identity = 52/85 (61.18%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    1 QTVRDVAIVPTRRWGGQGMLGVTIRFDSYHNADENLVRVLAVSTGGPAQIAGLRPETDYLLGTAEKVFKDPEVLQAELLAHLEQV 255
            +T RDV I P R WGGQGMLGVTIRFD+Y  A+E+LVRVL V    PA +AGL+P  DYLLGTAEKVFKD E L   +  H++ +
Sbjct:   75 ETTRDVVITPRRNWGGQGMLGVTIRFDTYWRAEESLVRVLDVVADSPAHLAGLQPSNDYLLGTAEKVFKDTETLYEAVSQHIDSI 159
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BLAST of mRNA_P-wetherbeei_contig18206.1.1 vs. uniprot
Match: W7U145_9STRA (Golgi reassembly-stacking protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U145_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.150e-25
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    1 QTVRDVAIVPTRRWGGQGMLGVTIRFDSYHNADENLVRVLAVSTGGPAQIAGLRPETDYLLGTAEKVFKDPEVLQAELLAHLEQ 252
            QTVRD+ + P++ W GQGMLGVTIRFD Y  ++E+LVRVL V    PA++AGL+P TD+LLGTAE VFKDP+VL+  L  +LEQ
Sbjct:   88 QTVRDLVLTPSKNWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQPMTDFLLGTAETVFKDPDVLEEVLGRNLEQ 171
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BLAST of mRNA_P-wetherbeei_contig18206.1.1 vs. uniprot
Match: F0YJB4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJB4_AURAN)

HSP 1 Score: 106 bits (264), Expect = 1.840e-25
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:   10 RDVAIVPTRRWGGQGMLGVTIRFDSYHNADENLVRVLAVSTGGPAQIAGLRPETDYLLGTAEKVFKD 210
            R V I PTR WGGQGMLGVTIRFD+YH ADE+LVRVL V+ G PA+IAGLR  TDYLLGTAE+V  D
Sbjct:   81 RSVTITPTRNWGGQGMLGVTIRFDTYHKADEHLVRVLEVAPGSPAEIAGLRAGTDYLLGTAERVLND 147
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BLAST of mRNA_P-wetherbeei_contig18206.1.1 vs. uniprot
Match: A0A7S3ZJU3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJU3_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.610e-25
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:   10 RDVAIVPTRRWGGQGMLGVTIRFDSYHNADENLVRVLAVSTGGPAQIAGLRPETDYLLGTAEKVFKDPEVLQAELLAHLE 249
            RDV+I PTR WGGQGMLGVTIRFD+Y+ ADE LVRVL+V+ G PAQ AG     DYLLGTAE+VF D + L  E   HL+
Sbjct:   78 RDVSITPTRNWGGQGMLGVTIRFDTYYKADECLVRVLSVADGSPAQAAGFIAGADYLLGTAERVFSDADALLDECQLHLD 157
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BLAST of mRNA_P-wetherbeei_contig18206.1.1 vs. uniprot
Match: A0A7S2H0B5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0B5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.060e-24
Identity = 51/83 (61.45%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    4 TVRDVAIVPTRRWGGQGMLGVTIRFDSYHNADENLVRVLAVSTGGPAQIAGLRPETDYLLGTAEKVFKDPEVLQAELLAHLEQ 252
            T RDV I P R WGGQGMLGVTIRFDS+  A+E+LVRVL V    PA++AGL    DYLLGTAEKVFK+ + L  E+  H+E+
Sbjct:   76 TTRDVVITPRRNWGGQGMLGVTIRFDSFWQAEESLVRVLEVVRDSPAELAGLSANDDYLLGTAEKVFKNTDTLYTEVSKHVEE 158
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BLAST of mRNA_P-wetherbeei_contig18206.1.1 vs. uniprot
Match: A0A835YI02_9STRA (GRASP55/65 PDZ-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI02_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.200e-24
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    4 TVRDVAIVPTRRWGGQGMLGVTIRFDSYHNADENLVRVLAVSTGGPAQIAGLRPETDYLLGTAEKVFKDPEVLQAELLAHLEQ 252
            ++R + I P+R+   +GMLGVTIRFDSY  AD++LVRVL+V    PA IAGL PETDYLLGTAE+VFKD + L  EL+ HLEQ
Sbjct:   78 SLRSITITPSRKPYYEGMLGVTIRFDSYFQADDHLVRVLSVVKNSPAHIAGLMPETDYLLGTAERVFKDTDALHDELMRHLEQ 160
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BLAST of mRNA_P-wetherbeei_contig18206.1.1 vs. uniprot
Match: A0A4D9DAT1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAT1_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.780e-24
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    1 QTVRDVAIVPTRRWGGQGMLGVTIRFDSYHNADENLVRVLAVSTGGPAQIAGLRPETDYLLGTAEKVFKDPEVLQAELLAHLEQ 252
            QTVRD+ + P+++W GQGMLGVTIRFD Y  ++E+LVRVL V    PA++AGL+  TD+LLGTAE VF+DP+VL+  L  +LEQ
Sbjct:   88 QTVRDLVLTPSKKWDGQGMLGVTIRFDYYDQSEEHLVRVLEVVPDSPAELAGLQAMTDFLLGTAETVFRDPDVLEEVLGRNLEQ 171
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18206.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWE1_ECTSI7.820e-3369.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2Y0B4_9STRA5.190e-2966.67Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2CUT3_9STRA7.150e-2763.86Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2WEH5_9STRA3.570e-2661.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U145_9STRA1.150e-2561.90Golgi reassembly-stacking protein 2 n=1 Tax=Nannoc... [more]
F0YJB4_AURAN1.840e-2574.63Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3ZJU3_9STRA2.610e-2565.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2H0B5_9STRA1.060e-2461.45Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YI02_9STRA3.200e-2462.65GRASP55/65 PDZ-like domain-containing protein n=1 ... [more]
A0A4D9DAT1_9STRA3.780e-2459.52Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18206contigP-wetherbeei_contig18206:367..1264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWE1
Preferred nameGORASP1
PFAMsGRASP55_65
Model size541
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0002009,GO:0002165,GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005793,GO:0005794,GO:0005795,GO:0005797,GO:0005798,GO:0005801,GO:0005829,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007275,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009306,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009987,GO:0010256,GO:0010604,GO:0010721,GO:0010769,GO:0010771,GO:0010975,GO:0010977,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016333,GO:0019222,GO:0019538,GO:0022008,GO:0022603,GO:0022604,GO:0022607,GO:0030154,GO:0031090,GO:0031323,GO:0031325,GO:0031344,GO:0031345,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032940,GO:0033036,GO:0033116,GO:0034645,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0036211,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044719,GO:0045184,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046903,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0060429,GO:0060562,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090114,GO:0097708,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903320,GO:1903322,GO:1904666,GO:1904668,GO:2000026,GO:2000171
Exons2
Evalue2.36e-25
EggNOG OGsCOG5233@1|root,KOG3834@2759|Eukaryota
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-09_004030.1
DescriptionGolgi organization
Cds size309
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.2638419-UTR-P-wetherbeei_contig18206:366..4201683186139.2638419-UTR-P-wetherbeei_contig18206:366..420Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18206 367..420 +
1683186139.2913632-UTR-P-wetherbeei_contig18206:1086..12641683186139.2913632-UTR-P-wetherbeei_contig18206:1086..1264Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18206 1087..1264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.2744098-CDS-P-wetherbeei_contig18206:420..4741683186139.2744098-CDS-P-wetherbeei_contig18206:420..474Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18206 421..474 +
1683186139.2837322-CDS-P-wetherbeei_contig18206:831..10861683186139.2837322-CDS-P-wetherbeei_contig18206:831..1086Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18206 832..1086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18206.1.1prot_P-wetherbeei_contig18206.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18206 421..1086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18206.1.1

>prot_P-wetherbeei_contig18206.1.1 ID=prot_P-wetherbeei_contig18206.1.1|Name=mRNA_P-wetherbeei_contig18206.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
MLGVTIRFDSYHNADENLVRVLAVSTGGPAQIAGLRPETDYLLGTAEKVF
KDPEVLQAELLAHLEQVSFSVLSRFDVVIRQLRYCLSVWIDRLRNTHGRD
GV*
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mRNA from alignment at P-wetherbeei_contig18206:367..1264+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18206.1.1 ID=mRNA_P-wetherbeei_contig18206.1.1|Name=mRNA_P-wetherbeei_contig18206.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=898bp|location=Sequence derived from alignment at P-wetherbeei_contig18206:367..1264+ (Phaeothamnion wetherbeei SAG_119_79)
CAGACGGTGCGGGATGTGGCAATAGTTCCGACGCGCCGATGGGGCGGCCA
GGGAATGCTCGGCGTGACCATCCGCTTCGACAGCTACCACAACGCGGACG
AAAACTTGGTGAGTCTGTTTTCGGCCGGCTGGCCTCGCGTTTTCTTTGAG
GTCGGTACAGTTCGGATTTGGCACCGCCGCAAATTGACATGCAGAGAATT
CTCTTGAGGCGGATGGTTTCTTTGTTGGCGCACAGAAATCCTTCTCATCC
CGTTTTCCTTCTGGGCCCGTTTCTCAAAGGGCATAATCCTTCGCTCGCCC
TGTGCGTTGCTGCCCTTCCCCGGTTTTGTTTTCTCGTCATCTCCCTCCCT
CAAATCCCGTTTGCACGCACGGCTGGTCGTCGCCCTTCATCCCGCTTAAC
ACACGCGCGGGACACACCTGCTTTCCGGGAACTTTCCTTCCCGGTCCGAG
AAATTTCTCTTGCAGGTGCGAGTACTCGCAGTTTCCACGGGAGGCCCCGC
GCAGATCGCGGGGCTGCGGCCAGAGACGGACTACCTGCTCGGCACGGCGG
AAAAGGTCTTTAAAGACCCGGAAGTGTTGCAGGCAGAATTGCTGGCGCAC
CTGGAGCAGGTCAGTTTTTCGGTGCTGAGTCGGTTTGATGTGGTCATTCG
GCAGTTACGTTACTGCCTTTCTGTCTGGATTGACAGGTTACGCAACACGC
ACGGCAGAGACGGTGTCTAAGGATCCGAGAGGCTTTTTTCCCCTTCTTTC
TTTGTCAGATGAGCCAGCAGTTACACCTCCTGTATCGAGGCGGTGCCTGA
GGCAGTTTCCCCTCACTTCGCTCACAGTTGCTGCGTTGAAGGAGGCAAAC
CTGTCACTGAAACCCGAGGCACCTTGTCAGCTCATCATATCATGTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18206:367..1264+

>mRNA_P-wetherbeei_contig18206.1.1 ID=mRNA_P-wetherbeei_contig18206.1.1|Name=mRNA_P-wetherbeei_contig18206.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig18206:367..1264+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGGCGTGACCATCCGCTTCGACAGCTACCACAACGCGGACGAAAA
CTTGGTGCGAGTACTCGCAGTTTCCACGGGAGGCCCCGCGCAGATCGCGG
GGCTGCGGCCAGAGACGGACTACCTGCTCGGCACGGCGGAAAAGGTCTTT
AAAGACCCGGAAGTGTTGCAGGCAGAATTGCTGGCGCACCTGGAGCAGGT
CAGTTTTTCGGTGCTGAGTCGGTTTGATGTGGTCATTCGGCAGTTACGTT
ACTGCCTTTCTGTCTGGATTGACAGGTTACGCAACACGCACGGCAGAGAC
GGTGTCTAA
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