mRNA_P-wetherbeei_contig182.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig182.3.1
Unique NamemRNA_P-wetherbeei_contig182.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig182.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig182contigP-wetherbeei_contig182:4290..5723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1434
Hectar predicted targeting categoryother localisation
Exons1
Cds size1041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186138.9289079-UTR-P-wetherbeei_contig182:4289..46401683186138.9289079-UTR-P-wetherbeei_contig182:4289..4640Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig182 4290..4640 -
1683186138.9492693-UTR-P-wetherbeei_contig182:5681..57231683186138.9492693-UTR-P-wetherbeei_contig182:5681..5723Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig182 5682..5723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186138.9396367-CDS-P-wetherbeei_contig182:4640..56811683186138.9396367-CDS-P-wetherbeei_contig182:4640..5681Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig182 4641..5681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig182.3.1prot_P-wetherbeei_contig182.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig182 4641..5681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig182.3.1

>prot_P-wetherbeei_contig182.3.1 ID=prot_P-wetherbeei_contig182.3.1|Name=mRNA_P-wetherbeei_contig182.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=347bp
MAGVAAAVAPPPAPLTGAATLVTREDGLVVPVYAEPGALGVMTAAVAIGR
GPGSGMGGGGSGGSGDHCWNDAVHGSGPAWGPGGGRGGGDGNGTDSTAEA
TIVVAGGAHWVHNERQGGGGGGETSRTAGGGGGGGPSGGSRWADASVPAG
PGSGGGRGGGGAGSIWGDDGSRSTGPRGERGSTGGGAAWMPPAGLGIGGA
GAAGVPSDGGGSGIDGPPGFGYVAAAWGGDEGAGGDGHGSVQDPHYQGGP
HSSGPWGGGGGGGGSGGSGGNKIAGAVPPPGWQGGPDADAGFASSGGGAG
GGLKAPPGFAPAAMHHHQQQQQQQPQQAGVPAVALNAGAASFSPQV*
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mRNA from alignment at P-wetherbeei_contig182:4290..5723-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig182.3.1 ID=mRNA_P-wetherbeei_contig182.3.1|Name=mRNA_P-wetherbeei_contig182.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1434bp|location=Sequence derived from alignment at P-wetherbeei_contig182:4290..5723- (Phaeothamnion wetherbeei SAG_119_79)
GTTTTTGCGGGCGGAGCCGCCGGTGTTGGCGTGCCTCTGTCAATGGCTGG
CGTCGCAGCCGCGGTGGCCCCGCCGCCGGCGCCCTTGACCGGTGCCGCCA
CGCTCGTCACGCGCGAGGACGGCCTGGTCGTGCCTGTCTACGCAGAGCCC
GGAGCGCTCGGCGTCATGACCGCCGCTGTCGCCATCGGCAGGGGGCCCGG
CAGCGGTATGGGCGGTGGCGGCAGCGGGGGCAGCGGGGACCATTGCTGGA
ACGATGCCGTCCACGGCAGCGGCCCTGCCTGGGGGCCCGGCGGCGGCCGG
GGTGGCGGCGACGGCAACGGAACAGACTCGACTGCTGAAGCCACCATCGT
GGTGGCCGGCGGCGCCCATTGGGTTCACAATGAACGTCAGGGCGGCGGCG
GCGGCGGCGAAACCAGTCGCACCGCGGGCGGTGGGGGCGGCGGAGGGCCG
AGTGGCGGCAGCCGATGGGCCGATGCCTCCGTCCCCGCCGGCCCGGGCAG
CGGCGGGGGGCGCGGCGGCGGCGGCGCTGGCAGCATCTGGGGCGACGACG
GCAGCCGCAGCACGGGGCCCAGGGGCGAGCGGGGAAGTACGGGCGGCGGC
GCGGCGTGGATGCCTCCCGCAGGCCTCGGCATTGGCGGCGCCGGCGCTGC
TGGAGTTCCCAGTGACGGCGGTGGTAGCGGCATAGACGGCCCCCCGGGCT
TTGGGTACGTCGCGGCCGCCTGGGGCGGCGATGAAGGCGCCGGCGGCGAC
GGGCACGGAAGTGTTCAGGATCCTCACTACCAGGGTGGGCCTCATTCCTC
CGGGCCGTGGGGCGGCGGCGGCGGCGGTGGCGGCAGCGGCGGCAGCGGTG
GCAACAAGATTGCCGGCGCCGTGCCGCCGCCGGGCTGGCAGGGAGGGCCT
GACGCTGACGCCGGATTTGCCTCTTCCGGGGGCGGCGCTGGCGGCGGCTT
GAAGGCGCCGCCAGGGTTTGCGCCGGCGGCGATGCACCACCACCAGCAGC
AGCAGCAGCAGCAACCGCAGCAGGCCGGGGTTCCGGCGGTTGCTCTCAAC
GCCGGCGCCGCGTCATTTTCGCCGCAGGTGTGAGGGCTCGCGACAGCGCG
CTGCAGGCGGTGGCCGGAGGAGGTCGGTTCCGATCGCTCTTCTCCGACCG
CTCTCGCGACCGGCCACGGTTGCTTGCAAGTCGCAGATACGGCAAAGTGG
GGGCGAAAGATGGAGGGGCAGGATTAGGAGGCGGACATCGGCGCTGTAAC
TAGCGGGAGGTGCCGCAGTGTGACGGCCAGCTTCGGGACCGAGGGCCGGG
TTGGGCGGGAATCTGAGAGGAGAAGGGTAACCCGGGTGTTCGCGGCGGGC
TGCAGCGCAGAGCGGCCTGATCCGGCAAATCGGCGGCTGTCGGAGGCATC
GACCCCGCAGCGTCGGGCGTCGGGCGGTGGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig182:4290..5723-

>mRNA_P-wetherbeei_contig182.3.1 ID=mRNA_P-wetherbeei_contig182.3.1|Name=mRNA_P-wetherbeei_contig182.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1041bp|location=Sequence derived from alignment at P-wetherbeei_contig182:4290..5723- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGGCGTCGCAGCCGCGGTGGCCCCGCCGCCGGCGCCCTTGACCGG
TGCCGCCACGCTCGTCACGCGCGAGGACGGCCTGGTCGTGCCTGTCTACG
CAGAGCCCGGAGCGCTCGGCGTCATGACCGCCGCTGTCGCCATCGGCAGG
GGGCCCGGCAGCGGTATGGGCGGTGGCGGCAGCGGGGGCAGCGGGGACCA
TTGCTGGAACGATGCCGTCCACGGCAGCGGCCCTGCCTGGGGGCCCGGCG
GCGGCCGGGGTGGCGGCGACGGCAACGGAACAGACTCGACTGCTGAAGCC
ACCATCGTGGTGGCCGGCGGCGCCCATTGGGTTCACAATGAACGTCAGGG
CGGCGGCGGCGGCGGCGAAACCAGTCGCACCGCGGGCGGTGGGGGCGGCG
GAGGGCCGAGTGGCGGCAGCCGATGGGCCGATGCCTCCGTCCCCGCCGGC
CCGGGCAGCGGCGGGGGGCGCGGCGGCGGCGGCGCTGGCAGCATCTGGGG
CGACGACGGCAGCCGCAGCACGGGGCCCAGGGGCGAGCGGGGAAGTACGG
GCGGCGGCGCGGCGTGGATGCCTCCCGCAGGCCTCGGCATTGGCGGCGCC
GGCGCTGCTGGAGTTCCCAGTGACGGCGGTGGTAGCGGCATAGACGGCCC
CCCGGGCTTTGGGTACGTCGCGGCCGCCTGGGGCGGCGATGAAGGCGCCG
GCGGCGACGGGCACGGAAGTGTTCAGGATCCTCACTACCAGGGTGGGCCT
CATTCCTCCGGGCCGTGGGGCGGCGGCGGCGGCGGTGGCGGCAGCGGCGG
CAGCGGTGGCAACAAGATTGCCGGCGCCGTGCCGCCGCCGGGCTGGCAGG
GAGGGCCTGACGCTGACGCCGGATTTGCCTCTTCCGGGGGCGGCGCTGGC
GGCGGCTTGAAGGCGCCGCCAGGGTTTGCGCCGGCGGCGATGCACCACCA
CCAGCAGCAGCAGCAGCAGCAACCGCAGCAGGCCGGGGTTCCGGCGGTTG
CTCTCAACGCCGGCGCCGCGTCATTTTCGCCGCAGGTGTGA
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