mRNA_P-wetherbeei_contig182.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig182.1.2
Unique NamemRNA_P-wetherbeei_contig182.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig182.1.2 vs. uniprot
Match: A0A7S3XZX8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZX8_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 4.680e-8
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 1 
Query: 1285 EDRRSVRNMREQKRSLRINRQIDELRDVLLEAGVTVKPNKYAILATVVDHMLALQSRSKELD 1470
            E +R  RNMREQKRS++I++QID LR +L EAG  VKPNK+A+L+ VV +M  L  +++ LD
Sbjct:   24 EKKRKDRNMREQKRSVKISKQIDRLRALLQEAGAQVKPNKHAVLSGVVHYMAQLHKQAQALD 85
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BLAST of mRNA_P-wetherbeei_contig182.1.2 vs. uniprot
Match: B7FV23_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FV23_PHATC)

HSP 1 Score: 61.2 bits (147), Expect = 4.050e-6
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1 
Query: 1285 EDRRSVRNMREQKRSLRINRQIDELRDVLLEAGVTVKPNKYAILATVVDHMLALQSRSKELDGE 1476
            E RR  RN REQ+RS +I  QID L++VL EA V  KP+KY+ L TVVD++  LQ RS  LD E
Sbjct:  233 ERRRYDRNAREQQRSQQITVQIDVLKNVLTEANVQFKPDKYSTLVTVVDYVKTLQERSTLLDQE 296
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BLAST of mRNA_P-wetherbeei_contig182.1.2 vs. uniprot
Match: A0A1Z5KAN4_FISSO (BHLH domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAN4_FISSO)

HSP 1 Score: 58.5 bits (140), Expect = 2.630e-5
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 1 
Query: 1270 RSVPVEDRRSVRNMREQKRSLRINRQIDELRDVLLEAGVTVKPNKYAILATVVDHMLALQSRSKELDGE 1476
            R  P   RR  RN++EQ+RS +I++QI +LRDVL EA V+ K NK++IL +V +++  LQS++  LD +
Sbjct:  199 RLSPSSKRRYERNLKEQQRSHQISQQIKQLRDVLTEANVSFKSNKFSILVSVSEYIQQLQSQAIMLDAD 267
[Close]
BLAST of mRNA_P-wetherbeei_contig182.1.2 vs. uniprot
Match: A0A1Z5KAW5_FISSO (BHLH domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAW5_FISSO)

HSP 1 Score: 57.8 bits (138), Expect = 4.600e-5
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1 
Query: 1270 RSVPVEDRRSVRNMREQKRSLRINRQIDELRDVLLEAGVTVKPNKYAILATVVDHMLALQSRSKELDGE 1476
            R  P   RR  RN++EQ+RS +I++QI +LRDVL EA V  K NK++IL +V +++  LQS++  LD +
Sbjct:  201 RLSPSSKRRYERNLKEQQRSHQISQQIKQLRDVLTEANVPFKSNKFSILVSVSEYIQQLQSQAIMLDAD 269
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig182.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3XZX8_HETAK4.680e-854.84Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
B7FV23_PHATC4.050e-656.25Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5KAN4_FISSO2.630e-546.38BHLH domain-containing protein n=1 Tax=Fistulifera... [more]
A0A1Z5KAW5_FISSO4.600e-546.38BHLH domain-containing protein n=1 Tax=Fistulifera... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig182contigP-wetherbeei_contig182:1200..4085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr44962
PFAMsHLH
Model size1991
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.1e-07
EggNOG OGs2C415@1|root,2SPVD@2759|Eukaryota,2XGFK@2836|Bacillariophyta
Descriptionhelix loop helix domain
Cds size1101
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186138.7391841-UTR-P-wetherbeei_contig182:1199..16811683186138.7391841-UTR-P-wetherbeei_contig182:1199..1681Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig182 1200..1681 -
1683186138.7733374-UTR-P-wetherbeei_contig182:3677..40851683186138.7733374-UTR-P-wetherbeei_contig182:3677..4085Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig182 3678..4085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186138.750574-CDS-P-wetherbeei_contig182:1681..18011683186138.750574-CDS-P-wetherbeei_contig182:1681..1801Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig182 1682..1801 -
1683186138.7583344-CDS-P-wetherbeei_contig182:2341..24051683186138.7583344-CDS-P-wetherbeei_contig182:2341..2405Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig182 2342..2405 -
1683186138.7657473-CDS-P-wetherbeei_contig182:2760..36771683186138.7657473-CDS-P-wetherbeei_contig182:2760..3677Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig182 2761..3677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig182.1.2prot_P-wetherbeei_contig182.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig182 1682..3677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig182.1.2

>prot_P-wetherbeei_contig182.1.2 ID=prot_P-wetherbeei_contig182.1.2|Name=mRNA_P-wetherbeei_contig182.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=367bp
MQQGKTAERERDQGRNKSYNNENMTTEEGGSGEQRGARHNFASNVSPQLW
AQNTAGGAFAGASYGSFGALGGFGFQPNFVPFTLAGNGGIYSLGTGANIN
FYPGALIGGGGVGGGVMGYSLPTVPTNLGPGSTFSPALGRNVMLPNTTAG
RIQKSTSAGATGAAPATVVAAAPILIMEGIARPLDQMQQDMDTATATVPA
LAMQQQEGATATPAPATPIPTLIGDGGAAAGWAPVQSQAEMQMHATLVPQ
SEPTTPAAVAGMAVAGASSADHGAAFRSGGRAKNGKGRSVPVEDRRSVRN
MREQKRSLRINRQIDELRDVLLEAGVTVKPNKYAILATVVDHMLALQSRS
KELDGEGGREGRGEQG*
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mRNA from alignment at P-wetherbeei_contig182:1200..4085-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig182.1.2 ID=mRNA_P-wetherbeei_contig182.1.2|Name=mRNA_P-wetherbeei_contig182.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2886bp|location=Sequence derived from alignment at P-wetherbeei_contig182:1200..4085- (Phaeothamnion wetherbeei SAG_119_79)
CTGCCCGTTCACTGCCCCTTGTTTCCCGGATACGGGAGGCGTCCTGTGTT
TCCACTTTTTCGTTTCTTTATCTATGCGGTATGCGGAGGTAAGGTCAGAA
CGAGCGAGAGCTTGGGCTTTGGCATCCTCACGCAGCGACGGGAGGCGGCC
GTTTTTTCCCTCTCTGCCCGTAGGGCTTCAAACTCCAAAATCGTCCCGTT
GCAGTCACAGTTCCCTTCAAATGGAGCAATCCTTTCAGAAACCGCAGGAT
GGGCGAGGAGGGGGCTCTTTGGGAAGCAGGAGGGAAGAGGAGACAAATCA
ACAATAAAGGGAAAACGCACTCGGCGTCCCCAATGCTGCACGCTGGAAAG
CGGTCAGTGCCAAAGAACGACCTTCTGGAAACCCAAATTGTTCTGTTTCA
GAACCACGATGCAACAAGGGAAAACAGCGGAAAGAGAGCGAGACCAAGGA
AGAAACAAGAGCTATAATAACGAGAACATGACGACAGAGGAAGGAGGAAG
CGGAGAGCAGCGGGGGGCGCGGCATAATTTCGCTTCAAATGTCTCTCCCC
AACTTTGGGCACAAAACACTGCTGGCGGCGCATTCGCAGGGGCGTCGTAC
GGCAGCTTCGGGGCACTTGGCGGCTTCGGCTTCCAGCCAAATTTCGTCCC
CTTCACGCTGGCTGGCAATGGAGGAATCTACAGTCTAGGCACAGGGGCCA
ACATAAATTTCTATCCAGGCGCCTTAATCGGCGGCGGCGGCGTCGGTGGC
GGCGTCATGGGCTACTCGCTCCCGACCGTGCCGACGAACTTGGGCCCCGG
ATCGACGTTTTCTCCAGCGCTGGGGCGAAACGTCATGCTACCCAATACCA
CCGCGGGTAGGATTCAGAAATCGACCAGCGCCGGAGCGACAGGAGCGGCG
CCTGCGACCGTCGTGGCGGCGGCTCCAATTCTCATCATGGAAGGCATCGC
CCGCCCGTTGGACCAGATGCAGCAGGATATGGACACGGCAACGGCTACGG
TGCCGGCGCTGGCGATGCAGCAGCAGGAAGGGGCCACCGCGACGCCGGCG
CCGGCGACGCCGATACCAACACTAATTGGCGACGGAGGAGCAGCGGCAGG
GTGGGCGCCCGTGCAGTCGCAGGCGGAGATGCAGATGCACGCTACCCTCG
TGCCGCAGAGCGAACCGACGACGCCGGCCGCAGTGGCGGGGATGGCGGTG
GCTGGCGCAAGCTCGGCGGATCACGGAGCCGCATTTAGAAGCGGCGGGCG
GGCGAAGAACGGCAAGGGGAGATCGGTGCCCGTGGAGGACAGGCGGTCCG
TCCGCAACATGCGCGAGCAAAAAAGGTCAGTGGACGAAACGGGAAGTCCG
GCGGCGGCATTTGCATGGCAAGGGGCTCCTTTCTGTTTAAAAAAAACATG
CGCTTAACACGCAATAAGCGGCGTATTCAATAGAGACGTTGGTAACCTGC
GGCAAAAGGGTGGGCGGACGTGTTTTGGTCAAATAGCCGCCGCGCTCGCG
CATGAATTTTTCAGGGCGGTGCTAAGCTCCCGCGCGGCTCTGGACGATCG
AGGTGCGCATATCTCCCCGTTATACCAGGGAGCGTCCATATTGAAGGAGC
CAGCCATTCTGCGGTGCCTTCATTTCCAGACGGAATTTTTTTAACGGAGG
GGGGAAGTCGGCCTTTTTCCGCCCTCGCAGGTCCCTCCGGATTAACAGGC
AGATCGACGAGCTGCGGGACGTCCTGCTGGAAGCCGGCGTGACGGTGAGA
ACAGACGGGGAAAAGGATGGGAAAAGAGGCGTGTTTGGTGGTCTGCTGGC
GGCGCGGCGGTTCAGGCGGCGGCGGCAGTGGCGGCGGCGTTGACTGCCGG
GAACGCCGGCGTTGACTGCCGGGGACGGCGGCGATGTTGGCTGCGCTGCC
GTTACGGGGAAGGCGTCCTCCTGGTTGCGGGCGCCAAGGGCGTAGCGATG
CGGCGGGAGCCGGCGGTGCACTTAAGGCAACGGAGGCGAGGTTGCTGCGG
CAGTGCGTTAAATGCCGAAGCAATGCCTGCGTTGTCCACGAAAATGGAAT
GGGGGTTTACCCTGATGGCGCGGCGTCGGCTGCATCTGTTGCTGCAGTCG
GTGCCAGAATTCATAGTGCAGGGTTTTAGCGGGACGTAGGTGCTGTTGCG
TTGCACCGAACGTTGAAACGCTCGCGTGGCCCGTGCTTTAGTTCTCCCAC
GCGAGTCGCTAAGCGGTTTTTGATAGCAGTGCCTGTTGCACCGCCGCCGC
TGCTGTCCCACTGCCGTCGCAAAAATAACATCAGGTCAAGCCGAACAAGT
ACGCCATCCTGGCGACGGTGGTGGATCACATGCTGGCGCTGCAGAGCCGC
TCCAAGGAGCTCGACGGTGAGGGAGGGAGGGAAGGAAGGGGCGAACAGGG
ATAGCCACGGCGCGGTTGCCGTCCGCCGTCTGTCTCGGTTTTTGCACGCG
ATGGAAGGACGGAGGAAGGGACGGAAGAAGGAAGGGAGTGTTGGTAAACG
GACGAGAGGGTTGTGGTTTGGTGCACCGCGGCGCTCTCAGTGCCTTCGGA
CAGGCGTGGGTGGCGCGGAGCGGTTGAGCTGCGCAGTAATTAGTTGTAGC
TCTCTTTCAGACCAATTAATGTTTGAAGGCTCGGTATTGTAAAGTGTGGG
ATCTGATTCTTCCGGCATCCGTCACATTGCGCTGTCTTGTTCTTTTGCCA
TCATGCCACGTACGTCTCTTGCCGCCGCGCACACGCCCGACAGCACACCT
TCTAAATTCCCACCGCCGACCGTACACAACACTCGTCTCCTCCCTTCAGG
GGCTGCGTCGACCGCGCCATCATCCCCGGCCCCTGCACCCGCCGCGATGA
AGAACGGGCTCGTCGTCGTGAAACCGGAAGAGGTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig182:1200..4085-

>mRNA_P-wetherbeei_contig182.1.2 ID=mRNA_P-wetherbeei_contig182.1.2|Name=mRNA_P-wetherbeei_contig182.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1101bp|location=Sequence derived from alignment at P-wetherbeei_contig182:1200..4085- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACAAGGGAAAACAGCGGAAAGAGAGCGAGACCAAGGAAGAAACAA
GAGCTATAATAACGAGAACATGACGACAGAGGAAGGAGGAAGCGGAGAGC
AGCGGGGGGCGCGGCATAATTTCGCTTCAAATGTCTCTCCCCAACTTTGG
GCACAAAACACTGCTGGCGGCGCATTCGCAGGGGCGTCGTACGGCAGCTT
CGGGGCACTTGGCGGCTTCGGCTTCCAGCCAAATTTCGTCCCCTTCACGC
TGGCTGGCAATGGAGGAATCTACAGTCTAGGCACAGGGGCCAACATAAAT
TTCTATCCAGGCGCCTTAATCGGCGGCGGCGGCGTCGGTGGCGGCGTCAT
GGGCTACTCGCTCCCGACCGTGCCGACGAACTTGGGCCCCGGATCGACGT
TTTCTCCAGCGCTGGGGCGAAACGTCATGCTACCCAATACCACCGCGGGT
AGGATTCAGAAATCGACCAGCGCCGGAGCGACAGGAGCGGCGCCTGCGAC
CGTCGTGGCGGCGGCTCCAATTCTCATCATGGAAGGCATCGCCCGCCCGT
TGGACCAGATGCAGCAGGATATGGACACGGCAACGGCTACGGTGCCGGCG
CTGGCGATGCAGCAGCAGGAAGGGGCCACCGCGACGCCGGCGCCGGCGAC
GCCGATACCAACACTAATTGGCGACGGAGGAGCAGCGGCAGGGTGGGCGC
CCGTGCAGTCGCAGGCGGAGATGCAGATGCACGCTACCCTCGTGCCGCAG
AGCGAACCGACGACGCCGGCCGCAGTGGCGGGGATGGCGGTGGCTGGCGC
AAGCTCGGCGGATCACGGAGCCGCATTTAGAAGCGGCGGGCGGGCGAAGA
ACGGCAAGGGGAGATCGGTGCCCGTGGAGGACAGGCGGTCCGTCCGCAAC
ATGCGCGAGCAAAAAAGGTCCCTCCGGATTAACAGGCAGATCGACGAGCT
GCGGGACGTCCTGCTGGAAGCCGGCGTGACGGTCAAGCCGAACAAGTACG
CCATCCTGGCGACGGTGGTGGATCACATGCTGGCGCTGCAGAGCCGCTCC
AAGGAGCTCGACGGTGAGGGAGGGAGGGAAGGAAGGGGCGAACAGGGATA
G
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