mRNA_P-wetherbeei_contig18191.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18191.1.1
Unique NamemRNA_P-wetherbeei_contig18191.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18191.1.1 vs. uniprot
Match: A0A6M5YWG0_9BACT (Drug resistance transporter, EmrB/QacA family n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YWG0_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 2.170e-12
Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 MLLSLPRRLLGLGFVLALFSLLPLTGVLNAQPVGRYRVAPGGFTYXXXXXXXXXNGM 171
            ML +LPRRL+ LG VLA+ SLLPL GVLNAQPVGRYRVAPGGFTY         NG+
Sbjct:    1 MLRTLPRRLMWLGIVLAVVSLLPLAGVLNAQPVGRYRVAPGGFTYVPPGGLGPMNGI 57
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BLAST of mRNA_P-wetherbeei_contig18191.1.1 vs. uniprot
Match: A0A6M5YIA2_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YIA2_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 3.320e-10
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 MLLSLPRRLLGLGFVLALFSLLPLTGVLNAQPVGRYRVAPGGFTYXXXXXXXXXNGM 171
            ML +LP RL+  G ++ALFSL+P+TG LNAQPVGRYR+APGGFTY         NG+
Sbjct:    1 MLHALPCRLMWFGLLMALFSLVPMTGALNAQPVGRYRLAPGGFTYVPPGGLTPVNGI 57
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18191.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6M5YWG0_9BACT2.170e-1268.42Drug resistance transporter, EmrB/QacA family n=1 ... [more]
A0A6M5YIA2_9BACT3.320e-1059.65Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18191contigP-wetherbeei_contig18191:3..551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size549
Hectar predicted targeting categorysignal peptide
Exons1
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186138.604934-CDS-P-wetherbeei_contig18191:2..5511683186138.604934-CDS-P-wetherbeei_contig18191:2..551Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18191 3..551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18191.1.1prot_P-wetherbeei_contig18191.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18191 3..551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18191.1.1

>prot_P-wetherbeei_contig18191.1.1 ID=prot_P-wetherbeei_contig18191.1.1|Name=mRNA_P-wetherbeei_contig18191.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
MLLSLPRRLLGLGFVLALFSLLPLTGVLNAQPVGRYRVAPGGFTYVPPGG
LTPANGMNGIQGNIQGNIQGIQGGGIQGIQGGIQGGGIQGGGIQGFGGGG
IQGGGIQGGGIQGFGGGGIQGFGGGGGIQGIQGGGIQGIQGGGIGGIGGN
GITFYSQYPTHLGSNLGGFQRVGGFGRGGFGGG
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mRNA from alignment at P-wetherbeei_contig18191:3..551-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18191.1.1 ID=mRNA_P-wetherbeei_contig18191.1.1|Name=mRNA_P-wetherbeei_contig18191.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig18191:3..551- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCTCTCCCTCCCCCGTCGGCTGCTGGGGCTCGGCTTCGTCCTGGC
CCTCTTCTCGCTACTTCCCTTGACCGGGGTGCTGAACGCACAACCGGTCG
GGCGCTACCGCGTGGCGCCGGGCGGCTTCACGTACGTACCGCCGGGCGGG
CTCACCCCGGCTAACGGCATGAACGGCATCCAGGGCAACATTCAGGGAAA
TATTCAGGGCATCCAGGGCGGCGGCATCCAGGGCATACAGGGCGGCATTC
AGGGTGGTGGCATTCAGGGTGGTGGCATCCAGGGGTTCGGTGGTGGCGGC
ATCCAGGGTGGTGGCATTCAGGGTGGCGGCATCCAGGGGTTCGGTGGCGG
CGGCATTCAGGGGTTCGGTGGCGGCGGTGGTATCCAGGGCATCCAGGGTG
GCGGCATTCAGGGCATCCAGGGCGGCGGTATTGGTGGTATTGGCGGTAAC
GGCATCACCTTTTACTCACAATACCCCACTCACCTGGGGAGCAACCTGGG
CGGGTTCCAGCGCGTCGGCGGATTCGGTCGCGGTGGATTCGGTGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18191:3..551-

>mRNA_P-wetherbeei_contig18191.1.1 ID=mRNA_P-wetherbeei_contig18191.1.1|Name=mRNA_P-wetherbeei_contig18191.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig18191:3..551- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCTCTCCCTCCCCCGTCGGCTGCTGGGGCTCGGCTTCGTCCTGGC
CCTCTTCTCGCTACTTCCCTTGACCGGGGTGCTGAACGCACAACCGGTCG
GGCGCTACCGCGTGGCGCCGGGCGGCTTCACGTACGTACCGCCGGGCGGG
CTCACCCCGGCTAACGGCATGAACGGCATCCAGGGCAACATTCAGGGAAA
TATTCAGGGCATCCAGGGCGGCGGCATCCAGGGCATACAGGGCGGCATTC
AGGGTGGTGGCATTCAGGGTGGTGGCATCCAGGGGTTCGGTGGTGGCGGC
ATCCAGGGTGGTGGCATTCAGGGTGGCGGCATCCAGGGGTTCGGTGGCGG
CGGCATTCAGGGGTTCGGTGGCGGCGGTGGTATCCAGGGCATCCAGGGTG
GCGGCATTCAGGGCATCCAGGGCGGCGGTATTGGTGGTATTGGCGGTAAC
GGCATCACCTTTTACTCACAATACCCCACTCACCTGGGGAGCAACCTGGG
CGGGTTCCAGCGCGTCGGCGGATTCGGTCGCGGTGGATTCGGTGGCGGC
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