mRNA_P-wetherbeei_contig18184.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18184.1.1
Unique NamemRNA_P-wetherbeei_contig18184.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18184.1.1 vs. uniprot
Match: D7FM33_ECTSI (W2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM33_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.550e-33
Identity = 74/157 (47.13%), Postives = 99/157 (63.06%), Query Frame = 1
Query:  184 KPDPAALAMAAAAEAVASGKRGKELKTLVAGMIPKPTARALLVAALEGCEIIQDANFTKDDALGPALKALAGS--STKEQTGLLYGAQELAHARGFPKYGAKGDNVLQTMFMWLYHGEVCEDEAYEAWKDDLADKTPGKTTAIVQTLKWFEWLETVE 648
            K DP  +A A+AAEA+ASGKRGK+LK  V     + TA ALL AALEG    +D  +   D  GPAL AL+    ST++Q G++Y      H  GFPK G  G  V+QT+FM +Y+ ++CE+EA+  WKDD+     G+  A++QT  WF WLE+VE
Sbjct:  477 KEDPVEVARASAAEALASGKRGKDLKEFVLAQEKRTTAGALLAAALEGTASPEDMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIG--GAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVE 631          
BLAST of mRNA_P-wetherbeei_contig18184.1.1 vs. uniprot
Match: A0A835YLD9_9STRA (W2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.310e-16
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  448 AHARGFPKYGAKGDNVLQTMFMWLYHGEVCEDEAYEAWKDDLADKTPGKTTAIVQTLKWFEWLETVE 648
            AH +GFPK   + DN++QT+F  L   E+C+++AY  WKDD+ D TPG+   IVQTLK+FEWLE  E
Sbjct:    3 AHEKGFPK--TEKDNMVQTLFTLLNIKEICDEDAYAEWKDDVDDATPGRKETIVQTLKFFEWLEAEE 67          
BLAST of mRNA_P-wetherbeei_contig18184.1.1 vs. uniprot
Match: A0A8J2T1S9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1S9_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.430e-12
Identity = 52/140 (37.14%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  238 GKRGKELKTLVAGMIPKPTARALLVAALEGCEIIQDANFTKDDALGPALKALAGSSTKEQTGLLYGAQELAHARGFPKYGAKGDNVLQTMFMWLYHGEVCEDEAYEAWKDD---LADKTPGKTTAIVQTLKWFEWLETVE 648
            G  G+ L   VA +  KP A A   A     +   D ++ K +A  PALK +A  ST+EQ  LL   Q    +  FPK  A G  ++Q  F +L+  EVC+ EAYEAW+D    +++  PGK  A+ QT ++F +L+T++
Sbjct:  327 GLTGQSLADAVAKLPDKPNADAFATARFG--KHGSDVSWLKTEA--PALKVVA-PSTEEQASLLLATQRHLASLEFPK-DANGKGLIQQAFKFLFLCEVCDVEAYEAWRDADDAVSEAVPGKIKALTQTTEFFAYLDTID 460          
BLAST of mRNA_P-wetherbeei_contig18184.1.1 vs. uniprot
Match: A0A4C1T1S0_EUMVA (Eukaryotic translation initiation factor 4 gamma 2 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1T1S0_EUMVA)

HSP 1 Score: 73.6 bits (179), Expect = 2.010e-11
Identity = 45/132 (34.09%), Postives = 63/132 (47.73%), Query Frame = 1
Query:  256 LKTLVAGMIPKPTARALLVAALEGCEI-IQDANFTKDDALGPALKALAGSSTKEQTGLLYGAQELAHARGFPKYGAKGDNVLQTMFMWLYHGEVCEDEAYEAWKDDLADKTPGKTTAIVQTLKWFEWLETVE 648
            + TLVA +    T  AL V A    +    +      +A  P L AL     + Q   +Y  Q  AH  G+PK       +L   FM+LY+ EVCE+EA+  W++D+ D  PGK  A+ Q   W  WL+  E
Sbjct:  840 VSTLVALLAKHITTEALTVGAGANADKGALEREKAMVEAYAPLLTALVEGRAELQLAAVYAVQVHAHEHGYPK------GLLLRWFMYLYNLEVCEEEAFLRWREDVTDAYPGKGEALFQVNAWLTWLQQQE 965          
BLAST of mRNA_P-wetherbeei_contig18184.1.1 vs. uniprot
Match: UPI001F91DFF4 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F91DFF4)

HSP 1 Score: 67.8 bits (164), Expect = 1.020e-10
Identity = 34/95 (35.79%), Postives = 49/95 (51.58%), Query Frame = 1
Query:  364 DALGPALKALAGSSTKEQTGLLYGAQELAHARGFPKYGAKGDNVLQTMFMWLYHGEVCEDEAYEAWKDDLADKTPGKTTAIVQTLKWFEWLETVE 648
            +A  P L AL     + Q   +Y  Q  AH   +PK       +L   FM+LY+ EVCE++A+  W++D+ D  PGK  A+ Q   W  WL+  E
Sbjct:   54 EAYAPLLTALLEGQPQLQLAAVYAVQVHAHHHRYPK------GMLLRWFMYLYNLEVCEEDAFLRWREDVTDAYPGKGEALFQVNTWLTWLQQQE 142          
BLAST of mRNA_P-wetherbeei_contig18184.1.1 vs. uniprot
Match: B3RJN9_TRIAD (W2 domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RJN9_TRIAD)

HSP 1 Score: 70.9 bits (172), Expect = 1.640e-10
Identity = 38/101 (37.62%), Postives = 54/101 (53.47%), Query Frame = 1
Query:  358 KDDALGPALKALAGSSTKEQTGL----LYGAQELAHARGFPKYGAKGDNVLQTMFMWLYHGEVCEDEAYEAWKDDLADKTPGKTTAIVQTLKWFEWLETVE 648
            K+  L   LK L      ++  L    +Y  Q   ++R FPK      +++Q MF  LY  E+CE+EA+  WK+DL DK PGK  A+ +  +W  WLET E
Sbjct:  795 KEKELMQGLKGLLHQFVHDKINLQMIVIYALQVFCYSRTFPK------DLMQRMFNILYEEELCEEEAFLKWKEDLNDKYPGKGEALFKVNQWLTWLETAE 889          
BLAST of mRNA_P-wetherbeei_contig18184.1.1 vs. uniprot
Match: A0A3P9KG60_ORYLA (Eukaryotic translation initiation factor 4, gamma 2b n=2 Tax=Oryzias TaxID=8089 RepID=A0A3P9KG60_ORYLA)

HSP 1 Score: 70.5 bits (171), Expect = 2.080e-10
Identity = 35/94 (37.23%), Postives = 50/94 (53.19%), Query Frame = 1
Query:  367 ALGPALKALAGSSTKEQTGLLYGAQELAHARGFPKYGAKGDNVLQTMFMWLYHGEVCEDEAYEAWKDDLADKTPGKTTAIVQTLKWFEWLETVE 648
            A  P ++      T+ Q   LY  Q   +A GFPK       +L   F++ Y  E+ E+EA+ AWK+D+A + PGK  A+ Q  +W  WLET E
Sbjct:  597 AFKPVMQKFLHDHTELQVSALYALQVHCNASGFPK------GMLLRYFVYFYDMEIIEEEAFLAWKEDIAQEFPGKGKALFQVNQWLTWLETAE 684          
BLAST of mRNA_P-wetherbeei_contig18184.1.1 vs. uniprot
Match: A0A194RFM4_PAPMA (Eukaryotic translation initiation factor 4 gamma 2 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A194RFM4_PAPMA)

HSP 1 Score: 70.1 bits (170), Expect = 2.710e-10
Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 1
Query:  364 DALGPALKALAGSSTKEQTGLLYGAQELAHARGFPKYGAKGDNVLQTMFMWLYHGEVCEDEAYEAWKDDLADKTPGKTTAIVQTLKWFEWLETVE 648
            +A  P L AL       Q   +Y  Q  AHA  +PK       +L   FM+LY+ EVCE+EA+  W++D+ D  PGK  A+ Q   W  WL+  E
Sbjct:  512 EAYAPLLTALLEGRPDLQLAAVYAVQVHAHAHRYPK------GMLLRWFMYLYNLEVCEEEAFLRWREDVTDAYPGKGEALFQVNTWLTWLQQQE 600          
BLAST of mRNA_P-wetherbeei_contig18184.1.1 vs. uniprot
Match: UPI001C201CDD (eukaryotic translation initiation factor 4 gamma 2 n=1 Tax=Aricia agestis TaxID=91739 RepID=UPI001C201CDD)

HSP 1 Score: 70.1 bits (170), Expect = 2.840e-10
Identity = 35/95 (36.84%), Postives = 48/95 (50.53%), Query Frame = 1
Query:  364 DALGPALKALAGSSTKEQTGLLYGAQELAHARGFPKYGAKGDNVLQTMFMWLYHGEVCEDEAYEAWKDDLADKTPGKTTAIVQTLKWFEWLETVE 648
            +A  P L  L       Q   +Y  Q LAH   +PK       +L   FM+LY+ EVCE+EA+  W++D+ D  PGK  A+ Q   W  WL+  E
Sbjct:  617 EAYAPLLSVLLQGRADLQLAAVYAVQLLAHRHRYPK------GMLLRWFMYLYNLEVCEEEAFLTWREDVTDAYPGKGEALFQVNAWLTWLQQQE 705          
BLAST of mRNA_P-wetherbeei_contig18184.1.1 vs. uniprot
Match: UPI0006799F41 (eukaryotic translation initiation factor 4 gamma 2-like n=2 Tax=Papilio TaxID=7145 RepID=UPI0006799F41)

HSP 1 Score: 70.1 bits (170), Expect = 2.900e-10
Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 1
Query:  364 DALGPALKALAGSSTKEQTGLLYGAQELAHARGFPKYGAKGDNVLQTMFMWLYHGEVCEDEAYEAWKDDLADKTPGKTTAIVQTLKWFEWLETVE 648
            +A  P L AL       Q   +Y  Q  AHA  +PK       +L   FM+LY+ EVCE+EA+  W++D+ D  PGK  A+ Q   W  WL+  E
Sbjct:  680 EAYAPLLTALLEGRPDLQLAAVYAVQVHAHAHRYPK------GMLLRWFMYLYNLEVCEEEAFLRWREDVTDAYPGKGEALFQVNTWLTWLQQQE 768          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18184.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM33_ECTSI2.550e-3347.13W2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A835YLD9_9STRA1.310e-1653.73W2 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A8J2T1S9_9STRA1.430e-1237.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4C1T1S0_EUMVA2.010e-1134.09Eukaryotic translation initiation factor 4 gamma 2... [more]
UPI001F91DFF41.020e-1035.79Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
B3RJN9_TRIAD1.640e-1037.62W2 domain-containing protein n=2 Tax=Trichoplax Ta... [more]
A0A3P9KG60_ORYLA2.080e-1037.23Eukaryotic translation initiation factor 4, gamma ... [more]
A0A194RFM4_PAPMA2.710e-1037.89Eukaryotic translation initiation factor 4 gamma 2... [more]
UPI001C201CDD2.840e-1036.84eukaryotic translation initiation factor 4 gamma 2... [more]
UPI0006799F412.900e-1037.89eukaryotic translation initiation factor 4 gamma 2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18184contigP-wetherbeei_contig18184:527..1213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FM33
Preferred nameEIF4G3
PFAMsMIF4G
Model size687
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.18e-34
EggNOG OGsKOG0401@1|root,KOG0401@2759|Eukaryota
Descriptiontranslation initiation factor activity
Cds size687
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186138.4205484-CDS-P-wetherbeei_contig18184:526..12131683186138.4205484-CDS-P-wetherbeei_contig18184:526..1213Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18184 527..1213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18184.1.1prot_P-wetherbeei_contig18184.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18184 527..1213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18184.1.1

>prot_P-wetherbeei_contig18184.1.1 ID=prot_P-wetherbeei_contig18184.1.1|Name=mRNA_P-wetherbeei_contig18184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=229bp
EPKPATDVVAAQEKALEPKAVPAKAAVPAAAMAAPAEAVAVAPAKVTAPA
KAKEPEKPAEPKPDPAALAMAAAAEAVASGKRGKELKTLVAGMIPKPTAR
ALLVAALEGCEIIQDANFTKDDALGPALKALAGSSTKEQTGLLYGAQELA
HARGFPKYGAKGDNVLQTMFMWLYHGEVCEDEAYEAWKDDLADKTPGKTT
AIVQTLKWFEWLETVEEEDDDEEDDEDA*
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mRNA from alignment at P-wetherbeei_contig18184:527..1213-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18184.1.1 ID=mRNA_P-wetherbeei_contig18184.1.1|Name=mRNA_P-wetherbeei_contig18184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=687bp|location=Sequence derived from alignment at P-wetherbeei_contig18184:527..1213- (Phaeothamnion wetherbeei SAG_119_79)
GAGCCCAAGCCGGCGACGGATGTGGTGGCTGCGCAGGAGAAGGCGCTGGA GCCGAAGGCGGTGCCGGCCAAGGCGGCAGTGCCTGCCGCCGCGATGGCGG CCCCCGCAGAGGCCGTGGCAGTGGCACCAGCAAAAGTGACAGCGCCTGCC AAGGCGAAGGAGCCGGAGAAGCCGGCGGAACCCAAGCCGGATCCAGCGGC GCTGGCCATGGCGGCGGCGGCGGAGGCAGTTGCGTCGGGCAAGCGAGGCA AGGAGCTCAAAACGCTCGTGGCCGGCATGATTCCCAAGCCGACGGCGCGG GCGCTGCTAGTGGCGGCGCTGGAGGGCTGCGAGATCATCCAGGACGCCAA CTTTACCAAGGACGACGCACTCGGCCCCGCGCTTAAGGCGCTGGCGGGAT CGAGCACCAAGGAGCAGACGGGGCTGCTCTATGGCGCGCAGGAGCTGGCG CACGCACGGGGCTTCCCCAAGTACGGCGCCAAGGGCGACAACGTGCTGCA GACCATGTTCATGTGGCTCTACCACGGGGAGGTGTGCGAGGACGAGGCGT ACGAGGCGTGGAAGGATGACCTGGCGGACAAGACGCCGGGCAAGACAACG GCCATTGTGCAGACCCTCAAGTGGTTCGAGTGGCTTGAGACCGTCGAGGA GGAGGACGACGACGAGGAGGATGACGAGGACGCCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18184:527..1213-

>mRNA_P-wetherbeei_contig18184.1.1 ID=mRNA_P-wetherbeei_contig18184.1.1|Name=mRNA_P-wetherbeei_contig18184.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=687bp|location=Sequence derived from alignment at P-wetherbeei_contig18184:527..1213- (Phaeothamnion wetherbeei SAG_119_79)
GAGCCCAAGCCGGCGACGGATGTGGTGGCTGCGCAGGAGAAGGCGCTGGA
GCCGAAGGCGGTGCCGGCCAAGGCGGCAGTGCCTGCCGCCGCGATGGCGG
CCCCCGCAGAGGCCGTGGCAGTGGCACCAGCAAAAGTGACAGCGCCTGCC
AAGGCGAAGGAGCCGGAGAAGCCGGCGGAACCCAAGCCGGATCCAGCGGC
GCTGGCCATGGCGGCGGCGGCGGAGGCAGTTGCGTCGGGCAAGCGAGGCA
AGGAGCTCAAAACGCTCGTGGCCGGCATGATTCCCAAGCCGACGGCGCGG
GCGCTGCTAGTGGCGGCGCTGGAGGGCTGCGAGATCATCCAGGACGCCAA
CTTTACCAAGGACGACGCACTCGGCCCCGCGCTTAAGGCGCTGGCGGGAT
CGAGCACCAAGGAGCAGACGGGGCTGCTCTATGGCGCGCAGGAGCTGGCG
CACGCACGGGGCTTCCCCAAGTACGGCGCCAAGGGCGACAACGTGCTGCA
GACCATGTTCATGTGGCTCTACCACGGGGAGGTGTGCGAGGACGAGGCGT
ACGAGGCGTGGAAGGATGACCTGGCGGACAAGACGCCGGGCAAGACAACG
GCCATTGTGCAGACCCTCAAGTGGTTCGAGTGGCTTGAGACCGTCGAGGA
GGAGGACGACGACGAGGAGGATGACGAGGACGCCTAA
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