mRNA_P-wetherbeei_contig18173.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18173.1.1
Unique NamemRNA_P-wetherbeei_contig18173.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18173.1.1 vs. uniprot
Match: A0A8J6AWR7_9EUKA (Reverse transcriptase domain-containing protein n=1 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6AWR7_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 1.130e-9
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 1
Query:    4 KAQPIAVGNALRRLFASAFFWENRPYLAKLMQEA--GHFGVGVSGGVQIVAAVARFIHESGEWLLSLDDANAFNFILRGAFLPAVAKELDGAGGYALRVYGCLGDPPPALLYRMESGDVLTIRSAGGVEQGEQGDPLDPVFFSLGILAAMRAFR 459
            K +P+A+G ALRR+ A A        L KL +E     FG+G S G++ + A+ R   + G  +LSLD +NA+N + R   L  V+        Y    Y        + L    SG VL  RS  GV+QG   DPL P+ FSLG+   +   R
Sbjct:  251 KLRPVAMGEALRRIAAKA---AAETVLPKLREEVFVDQFGLGESCGLERMVAITRRHFDDGGTVLSLDLSNAYNTLSRDFLLRCVSTYCPALVDYVKGQYS-------SSLLLSTSGVVL--RSEEGVQQG---DPLSPLLFSLGMKPVLDRLR 389          
BLAST of mRNA_P-wetherbeei_contig18173.1.1 vs. uniprot
Match: A0A8J6B6M1_9EUKA (Reverse transcriptase domain-containing protein n=4 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6B6M1_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 1.250e-9
Identity = 54/154 (35.06%), Postives = 75/154 (48.70%), Query Frame = 1
Query:    4 KAQPIAVGNALRRLFASAFFWENRPYLAKLMQEA--GHFGVGVSGGVQIVAAVARFIHESGEWLLSLDDANAFNFILRGAFLPAVAKELDGAGGYALRVYGCLGDPPPALLYRMESGDVLTIRSAGGVEQGEQGDPLDPVFFSLGILAAMRAFR 459
            K +P+A+G ALRR+ A A        L KL +E     FG+G S G++ + A+ R   + G  +LSLD +NA+N + R   L  V+        Y    Y        + L    SG VL  RS  GV+QG   DPL P+ FSLG+   +   R
Sbjct:  518 KLRPVAMGEALRRIAAKA---AAETVLPKLREEVFVDQFGLGESCGLERMVAITRRHFDDGGTVLSLDLSNAYNTLSRDFLLRCVSTYCPALVDYVKGQYS-------SSLLLSTSGVVL--RSEEGVQQG---DPLSPLLFSLGMKPVLDRLR 656          
BLAST of mRNA_P-wetherbeei_contig18173.1.1 vs. uniprot
Match: A0A5M6BUW3_9TREE (Reverse transcriptase domain-containing protein n=1 Tax=Kwoniella shandongensis TaxID=1734106 RepID=A0A5M6BUW3_9TREE)

HSP 1 Score: 65.9 bits (159), Expect = 2.310e-9
Identity = 56/157 (35.67%), Postives = 74/157 (47.13%), Query Frame = 1
Query:   10 QPIAVGNALRRLFASAFFWENRPYLAKLMQEAGHFGVGVSGGVQ-IVAAVARFIHESGEW-----LLSLDDANAFNFILRGAFLPAVAKELDGAGGYALRVYGCLGDPPPALLYRMESGDVLTIRSAGGVEQGEQGDPLDPVFFSLGILAAMRAFRA 462
            +PIAVG    RL   A F  N  +  + +     FG+G  GGV+ I+ AV   +     +     L SLD +NAFN + R      + K        A   YG    P P LLY    G+V+ I S  GV QG   DPL P+FFS+GI  A+   +A
Sbjct:  513 RPIAVGEMFYRLSMKAIFKSN--FQTEFLSP-NQFGIGSKGGVETIIHAVQMMVDRHPAFRRFRHLTSLDASNAFNALSRRKLANCIKKYAPSLLRSAEWSYG---KPSPLLLYG--GGEVVEIPSEDGVRQG---DPLGPLFFSIGIREAVDELQA 658          
BLAST of mRNA_P-wetherbeei_contig18173.1.1 vs. uniprot
Match: UPI0018CFFB94 (uncharacterized protein LOC119692769 n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018CFFB94)

HSP 1 Score: 60.1 bits (144), Expect = 1.230e-7
Identity = 49/144 (34.03%), Postives = 64/144 (44.44%), Query Frame = 1
Query:   10 QPIAVGNALRRLFASAFFWENRPYLAKLMQEAGHFGVGVSGGVQIVAAVARFIHESGEW--LLSLDDANAFNFILRGAFLPAVAKELDGAGGYALRVYGCLGDPPPALLYRMESGDVLTIRSAGGVEQGEQGDPLDPVFFSLGI 435
            +PIAVGN +RR  +     +  P L+K  +     G G  GG +     AR     G++  LL +D  NAFN I R A L  +    +    Y  + Y      P  L Y+        I SA G +QG   DPL P  FSLGI
Sbjct:   69 RPIAVGNTIRRTASKICCRKMLPELSKKFEPI-QLGFGTKGGCEAAVHAARTFITKGDFQVLLKVDVKNAFNSINRSALLTEIRSHANPIYKYIWQCYS----KPSKLSYKNHH-----ILSATGCQQG---DPLGPAIFSLGI 199          
BLAST of mRNA_P-wetherbeei_contig18173.1.1 vs. uniprot
Match: A0A1Q9ENT7_SYMMI (132 kDa protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9ENT7_SYMMI)

HSP 1 Score: 56.2 bits (134), Expect = 4.830e-6
Identity = 54/159 (33.96%), Postives = 73/159 (45.91%), Query Frame = 1
Query:   16 IAVGNALRRL--------FASAFFWENRPYLAKLMQEAGHFGVGVSGGVQIVAAVARFIHESGEWLLSLDDANAFNFILRGAFLPAVAKELDGAG--GYALRVYGCLGDPPPALLYRMESGDVLTIRSAGGVEQGEQGDPLDPVFFSLGILAAMRAFRA 462
            I VG+ LRRL        FA AF    RP+   L   AG   +  S  +Q+   +   +      +LS+D   A++ I R A L A+    D A    +    YG     P   L+R ++G V  I  A G   GEQGDPL P  F+LGI  A+ A +A
Sbjct:  508 IVVGDYLRRLVARTLAQHFAPAFDVATRPHQYALATRAGTEALAHS--LQLECEIDPTLT-----VLSVDGVGAYDLISRLAMLRALRNTPDAASVLPFVRLFYG----QPSTFLWRDDAGVVHRIVQAEG---GEQGDPLMPALFALGIAPALAALQA 652          
BLAST of mRNA_P-wetherbeei_contig18173.1.1 vs. uniprot
Match: A0A1Q9CF39_SYMMI (132 kDa protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CF39_SYMMI)

HSP 1 Score: 56.2 bits (134), Expect = 5.050e-6
Identity = 54/159 (33.96%), Postives = 73/159 (45.91%), Query Frame = 1
Query:   16 IAVGNALRRL--------FASAFFWENRPYLAKLMQEAGHFGVGVSGGVQIVAAVARFIHESGEWLLSLDDANAFNFILRGAFLPAVAKELDGAG--GYALRVYGCLGDPPPALLYRMESGDVLTIRSAGGVEQGEQGDPLDPVFFSLGILAAMRAFRA 462
            I VG+ LRRL        FA AF    RP+   L   AG   +  S  +Q+   +   +      +LS+D   A++ I R A L A+    D A    +    YG     P   L+R ++G V  I  A G   GEQGDPL P  F+LGI  A+ A +A
Sbjct: 1464 IVVGDYLRRLVARTLAQHFAPAFDVATRPHQYALATRAGTEALAHS--LQLECEIDPTLT-----VLSVDGVGAYDLISRLAMLRALRNTPDAASVLPFVRLFYG----QPSTFLWRDDAGVVHRIVQAEG---GEQGDPLMPALFALGIAPALAALQA 1608          
BLAST of mRNA_P-wetherbeei_contig18173.1.1 vs. uniprot
Match: A0A812TCN6_9DINO (RplS protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812TCN6_9DINO)

HSP 1 Score: 55.8 bits (133), Expect = 6.460e-6
Identity = 47/169 (27.81%), Postives = 78/169 (46.15%), Query Frame = 1
Query:   16 IAVGNALRRLFASAFFWENRPYLAKLMQEAGHFGVGVSGGVQIVAAVARFIHESGEW--LLSLDDANAFNFILRGAFLPAVAKELDGAG--GYALRVYGCLGDPPPALLYRMESGDVLTIRSAGGVEQGEQGDPLDPVFFSLGILAAMRAFRASAAANGCSLVGILDDL 510
            + VG+ LRRL A     +   ++ +  +    F +    G + +A   +   +SG    +LS+D   AF+F+ R + L  +      A    +A   YG     P + ++  + G    +  A G   GEQGDPL P  F+LG+  A+R+F+A     G  +   LDD+
Sbjct:  377 LVVGDFLRRLVARTLAQQFSQHIDEATRPH-QFALSTRAGAEALAHCLQLETDSGPHCTVLSVDGIGAFDFVSRQSMLTELRNTPGAAAMLSFARLFYG----RPSSFVWSDDDGATHLVSQAEG---GEQGDPLMPALFALGLAPALRSFQAELL-PGERVRAFLDDI 536          
BLAST of mRNA_P-wetherbeei_contig18173.1.1 vs. uniprot
Match: A0A813ISX4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813ISX4_POLGL)

HSP 1 Score: 55.5 bits (132), Expect = 8.850e-6
Identity = 46/147 (31.29%), Postives = 67/147 (45.58%), Query Frame = 1
Query:    4 KAQPIAVGNALRRLFASAFFWENRPYLAKLMQEAGHFGVGVSGGVQIVAAVARFIHESGEWL--LSLDDANAFNFILRGAFLPAVAKELDGAGGYALRVYGC-LGDPPPALLYRMESGDVLTIRSAGGVEQGEQGDPLDPVFFSLGI 435
            K +P+  G  LRRL ASA    ++  +A    EA  F VG   G++ + A  R + E+   L  L  D  +AFN + R      V  +L+    + L      L  P  A+L + +    L      GV+QG   DPL P  F+LG+
Sbjct:  228 KLRPLMCGATLRRLSASALCSFDKELMAASAGEAHQFAVGTPAGIEKLGATLRTLLEAFPELAVLQFDAVSAFNNMSR----ETVLAKLEATAPHLLTFAALWLTRPSVAVLTKTDGSYALLPTVTSGVDQG---DPLSPFLFALGL 367          
BLAST of mRNA_P-wetherbeei_contig18173.1.1 vs. uniprot
Match: A0A6P7TVY3_OCTVU (uncharacterized protein LOC115227355 n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A6P7TVY3_OCTVU)

HSP 1 Score: 52.4 bits (124), Expect = 9.210e-5
Identity = 49/146 (33.56%), Postives = 64/146 (43.84%), Query Frame = 1
Query:   10 QPIAVGNALRRLFASAFFWENRPYLAKLMQEAGHFGVGVSGGVQI-VAAVARFIHESGEW---LLSLDDANAFNFILRGAFLPAVAKELDGAGGYALRVYGCLGDPPPALLYRMESGDVLTIRSAGGVEQGEQGDPLDPVFFSLGI 435
            +PIAVG+  RRL +        P L  LM      GVG  GG +  +  +  F H +      ++ LD  NAFN ILR + L    +       Y L  Y      P  L++         I S+ GV+QG   DPL PV F LGI
Sbjct:   30 RPIAVGSVFRRLASKMACRAVIPTLTPLMCPI-QLGVGTPGGCEAAIHGIRAFNHVNNNTPHIIVKLDIRNAFNTILRDSILENCLEFCPEIYNYILSSYA----KPSTLVH-----GPYHISSSSGVQQG---DPLGPVLFCLGI 162          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18173.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A8J6AWR7_9EUKA1.130e-935.06Reverse transcriptase domain-containing protein n=... [more]
A0A8J6B6M1_9EUKA1.250e-935.06Reverse transcriptase domain-containing protein n=... [more]
A0A5M6BUW3_9TREE2.310e-935.67Reverse transcriptase domain-containing protein n=... [more]
UPI0018CFFB941.230e-734.03uncharacterized protein LOC119692769 n=1 Tax=Plute... [more]
A0A1Q9ENT7_SYMMI4.830e-633.96132 kDa protein n=1 Tax=Symbiodinium microadriatic... [more]
A0A1Q9CF39_SYMMI5.050e-633.96132 kDa protein n=1 Tax=Symbiodinium microadriatic... [more]
A0A812TCN6_9DINO6.460e-627.81RplS protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax... [more]
A0A813ISX4_POLGL8.850e-631.29Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A6P7TVY3_OCTVU9.210e-533.56uncharacterized protein LOC115227355 n=1 Tax=Octop... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18173contigP-wetherbeei_contig18173:323..844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size522
Hectar predicted targeting categoryother localisation
Exons1
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186138.1616986-CDS-P-wetherbeei_contig18173:322..8441683186138.1616986-CDS-P-wetherbeei_contig18173:322..844Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18173 323..844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18173.1.1prot_P-wetherbeei_contig18173.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18173 323..844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18173.1.1

>prot_P-wetherbeei_contig18173.1.1 ID=prot_P-wetherbeei_contig18173.1.1|Name=mRNA_P-wetherbeei_contig18173.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
MKAQPIAVGNALRRLFASAFFWENRPYLAKLMQEAGHFGVGVSGGVQIVA
AVARFIHESGEWLLSLDDANAFNFILRGAFLPAVAKELDGAGGYALRVYG
CLGDPPPALLYRMESGDVLTIRSAGGVEQGEQGDPLDPVFFSLGILAAMR
AFRASAAANGCSLVGILDDLLAMA
back to top

mRNA from alignment at P-wetherbeei_contig18173:323..844-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18173.1.1 ID=mRNA_P-wetherbeei_contig18173.1.1|Name=mRNA_P-wetherbeei_contig18173.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig18173:323..844- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCGCAGCCGATCGCCGTCGGCAACGCGCTGCGCCGTCTTTTTGC CTCGGCTTTCTTCTGGGAAAATCGGCCGTATCTGGCCAAGCTCATGCAGG AGGCGGGACACTTCGGGGTAGGCGTGAGCGGCGGTGTTCAGATCGTGGCA GCGGTGGCCCGCTTCATCCATGAGAGCGGCGAGTGGCTGCTGTCACTGGA TGACGCGAATGCCTTCAACTTCATCCTCCGCGGTGCTTTCCTCCCGGCCG TCGCCAAGGAGCTCGACGGCGCCGGCGGCTACGCCCTTCGAGTCTATGGC TGCCTTGGGGACCCGCCCCCAGCGCTGTTGTACCGCATGGAGTCGGGCGA TGTTTTGACCATCCGGTCTGCCGGTGGCGTTGAGCAGGGCGAGCAGGGCG ACCCGCTGGATCCCGTCTTCTTCAGCCTCGGAATCCTGGCGGCGATGCGG GCGTTCCGCGCCTCCGCCGCTGCCAATGGATGCTCCCTCGTCGGCATCCT CGACGATTTGCTGGCTATGGCT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18173:323..844-

>mRNA_P-wetherbeei_contig18173.1.1 ID=mRNA_P-wetherbeei_contig18173.1.1|Name=mRNA_P-wetherbeei_contig18173.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig18173:323..844- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCGCAGCCGATCGCCGTCGGCAACGCGCTGCGCCGTCTTTTTGC
CTCGGCTTTCTTCTGGGAAAATCGGCCGTATCTGGCCAAGCTCATGCAGG
AGGCGGGACACTTCGGGGTAGGCGTGAGCGGCGGTGTTCAGATCGTGGCA
GCGGTGGCCCGCTTCATCCATGAGAGCGGCGAGTGGCTGCTGTCACTGGA
TGACGCGAATGCCTTCAACTTCATCCTCCGCGGTGCTTTCCTCCCGGCCG
TCGCCAAGGAGCTCGACGGCGCCGGCGGCTACGCCCTTCGAGTCTATGGC
TGCCTTGGGGACCCGCCCCCAGCGCTGTTGTACCGCATGGAGTCGGGCGA
TGTTTTGACCATCCGGTCTGCCGGTGGCGTTGAGCAGGGCGAGCAGGGCG
ACCCGCTGGATCCCGTCTTCTTCAGCCTCGGAATCCTGGCGGCGATGCGG
GCGTTCCGCGCCTCCGCCGCTGCCAATGGATGCTCCCTCGTCGGCATCCT
CGACGATTTGCTGGCTATGGCT
back to top