mRNA_P-wetherbeei_contig18170.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18170.1.1
Unique NamemRNA_P-wetherbeei_contig18170.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18170.1.1 vs. uniprot
Match: A0A7Y1YWA5_9GAMM (Sec translocon accessory complex subunit YajC n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y1YWA5_9GAMM)

HSP 1 Score: 144 bits (363), Expect = 1.180e-42
Identity = 68/106 (64.15%), Postives = 86/106 (81.13%), Query Frame = 1
Query:    1 MDYLIPNAWAQEAVGGAQGGLAGFLPLAILFLVFYLFLIRPQMKRQKEHAKLVRELAKGDEVVTTGGMLGRVTEVGANFVKLEIAKDTEVKVQKHAIAQVMPKGTV 318
            MD+LI NA+AQ+A G   GGL GFLPL ++F VFY  LIRPQMKR KEH K+V ELAKGDEVVT GG+LGR+T++G +F+ LE+A +  +KVQ+HA+A VMPKGT+
Sbjct:    1 MDFLIANAYAQDA-GAQGGGLMGFLPLILIFAVFYFMLIRPQMKRAKEHRKMVSELAKGDEVVTNGGLLGRITDLGDSFITLELADNVVIKVQRHAVATVMPKGTI 105          
BLAST of mRNA_P-wetherbeei_contig18170.1.1 vs. uniprot
Match: I3CL03_9GAMM (Sec translocon accessory complex subunit YajC n=2 Tax=Beggiatoa TaxID=1021 RepID=I3CL03_9GAMM)

HSP 1 Score: 142 bits (358), Expect = 7.020e-42
Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 1
Query:    1 MDYLIPNAWAQEAVGGAQGGLAGFLPLAILFLVFYLFLIRPQMKRQKEHAKLVRELAKGDEVVTTGGMLGRVTEVGANFVKLEIAKDTEVKVQKHAIAQVMPKGTVKEM 327
            MD+LI NAWA+ A   A GG A  +PL ILF+VFY  LIRPQ KR KEH K+V  LAKGDE+VT GG+LG+VT +G NF+ +E+A + EVK+Q+ A+A VMPKGT+K +
Sbjct:    1 MDFLIQNAWAEGAAASAGGGFASLIPLVILFVVFYFLLIRPQTKRVKEHKKMVDSLAKGDEIVTQGGLLGKVTNLGDNFIAVEVAPNIEVKIQRQAVAAVMPKGTIKAL 109          
BLAST of mRNA_P-wetherbeei_contig18170.1.1 vs. uniprot
Match: A0A7C1WAV9_9GAMM (Sec translocon accessory complex subunit YajC n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A7C1WAV9_9GAMM)

HSP 1 Score: 140 bits (353), Expect = 4.310e-41
Identity = 65/108 (60.19%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    1 MDYLIPNAWAQEAV-GGAQGGLAGFLPLAILFLVFYLFLIRPQMKRQKEHAKLVRELAKGDEVVTTGGMLGRVTEVGANFVKLEIAKDTEVKVQKHAIAQVMPKGTVK 321
            MD++IPNAWAQ A  GG   GL   L L +LF+VFY  LIRPQ KR KEH ++V  LAKGDE+VT GG+LGR+ ++G NF+ LE+A +TEVKVQ+ ++A VMPKGT+K
Sbjct:    1 MDFIIPNAWAQAAPSGGGDAGLINILMLVVLFVVFYFLLIRPQTKRVKEHKQMVESLAKGDEIVTNGGLLGRIAQIGDNFIMLEVATNTEVKVQRQSVAAVMPKGTMK 108          
BLAST of mRNA_P-wetherbeei_contig18170.1.1 vs. uniprot
Match: A0A7Y3HBI0_9GAMM (Sec translocon accessory complex subunit YajC n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y3HBI0_9GAMM)

HSP 1 Score: 138 bits (348), Expect = 2.200e-40
Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 MDYLIPNAWAQEAVGGAQGGLAGFLPLAILFLVFYLFLIRPQMKRQKEHAKLVRELAKGDEVVTTGGMLGRVTEVGANFVKLEIAKDTEVKVQKHAIAQVMPKGTV 318
            MD+LI NA+AQ   G  QGGL  FLPL ++F VFY  LIRPQMKR KEH K+V ELAKGDEVVT GG+LG++T++  +FV L++A   E+K+Q+HA+A VMPKGT+
Sbjct:    1 MDFLIANAYAQS--GQPQGGLMSFLPLILIFAVFYFMLIRPQMKRAKEHRKMVSELAKGDEVVTNGGLLGKITDINDSFVTLQLADSVEIKLQRHAVASVMPKGTM 104          
BLAST of mRNA_P-wetherbeei_contig18170.1.1 vs. uniprot
Match: A0A3M0YHM7_9GAMM (Sec translocon accessory complex subunit YajC n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M0YHM7_9GAMM)

HSP 1 Score: 137 bits (345), Expect = 6.700e-40
Identity = 69/108 (63.89%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 MDYLIPNAWAQEAVGGAQG-GLAGFLPLAILFLVFYLFLIRPQMKRQKEHAKLVRELAKGDEVVTTGGMLGRVTEVGANFVKLEIAKDTEVKVQKHAIAQVMPKGTVK 321
            M + I +AWAQ   G   G G   F+PL I+F+VFYL LIRPQMK+ KEH K+V  LAKGDEVVT GG+LGR+TEVG NFV++EIA    VKVQKHAIA +MPKGT+K
Sbjct:    1 MSFFISDAWAQA--GQQPGAGFMSFVPLIIIFVVFYLLLIRPQMKKAKEHRKMVESLAKGDEVVTNGGLLGRITEVGENFVEIEIADGVRVKVQKHAIASLMPKGTMK 106          
BLAST of mRNA_P-wetherbeei_contig18170.1.1 vs. uniprot
Match: A0A7Y2YY28_9GAMM (Sec translocon accessory complex subunit YajC n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2YY28_9GAMM)

HSP 1 Score: 137 bits (345), Expect = 6.900e-40
Identity = 64/107 (59.81%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 MDYLIPNAWAQEAVGGAQGGLAGFLPLAILFLVFYLFLIRPQMKRQKEHAKLVRELAKGDEVVTTGGMLGRVTEVGANFVKLEIAKDTEVKVQKHAIAQVMPKGTVK 321
            +D+ I +A+AQ+  G   GGL  FLPL I+F++FY  LIRPQMKR KEH KL+ EL  GDEVVT GG+LGR+T+VG +FV +E A + +++VQKHAIA VMPKGT+K
Sbjct:    4 LDFFIASAYAQD--GAQPGGLMSFLPLIIIFVIFYFLLIRPQMKRAKEHKKLIAELGNGDEVVTNGGLLGRITKVGESFVTVEFADNIQIRVQKHAIASVMPKGTIK 108          
BLAST of mRNA_P-wetherbeei_contig18170.1.1 vs. uniprot
Match: A0A1Z4VR82_9GAMM (Sec translocon accessory complex subunit YajC n=3 Tax=Thiohalobacter TaxID=1273155 RepID=A0A1Z4VR82_9GAMM)

HSP 1 Score: 137 bits (345), Expect = 7.560e-40
Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1
Query:    1 MDYLIPNAWAQEAVGGAQGGLAGFLPLAILFLVFYLFLIRPQMKRQKEHAKLVRELAKGDEVVTTGGMLGRVTEVGANFVKLEIAKDTEVKVQKHAIAQVMPKGTVKE 324
            +D+ I  AWAQEA  G    L  FLPL ++F+VF+  LIRPQ K+ KEH  +V  L KGDEVVT GG+LGR+TEVG NFV L+IA + E+KVQ+HA+A +MPKGTVK+
Sbjct:    5 LDFFISPAWAQEAPAGQPDPLMSFLPLILIFVVFWFLLIRPQQKKVKEHKAMVEALGKGDEVVTNGGVLGRITEVGDNFVTLKIADNVEIKVQRHAVASLMPKGTVKD 112          
BLAST of mRNA_P-wetherbeei_contig18170.1.1 vs. uniprot
Match: A0A1G0KD00_9GAMM (Sec translocon accessory complex subunit YajC n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 TaxID=1798300 RepID=A0A1G0KD00_9GAMM)

HSP 1 Score: 135 bits (339), Expect = 5.330e-39
Identity = 64/109 (58.72%), Postives = 82/109 (75.23%), Query Frame = 1
Query:    1 MDYLIPNAWAQEAVGGAQGGLAGFLPLAILFLVFYLFLIRPQMKRQKEHAKLVRELAKGDEVVTTGGMLGRVTEVGANFVKLEIAKDTEVKVQKHAIAQVMPKGTVKEM 327
            MD+L+ NAWAQ A     GG +G +   IL  VFY  LIRPQMK+ K H K+V  LAKGDEVVT+GG+LGR++E+G +F+ LE+AKD +VKVQKHA++ VMPKGT K +
Sbjct:    1 MDFLVNNAWAQGAPQPG-GGASGLIMFVILIAVFYFILIRPQMKQAKSHKKMVESLAKGDEVVTSGGLLGRISEIGDSFILLEVAKDVQVKVQKHAVSAVMPKGTAKTL 108          
BLAST of mRNA_P-wetherbeei_contig18170.1.1 vs. uniprot
Match: A0A7Y2YCJ7_9GAMM (Sec translocon accessory complex subunit YajC n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2YCJ7_9GAMM)

HSP 1 Score: 134 bits (338), Expect = 8.030e-39
Identity = 63/107 (58.88%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 MDYLIPNAWAQEAVGGAQGGLAGFLPLAILFLVFYLFLIRPQMKRQKEHAKLVRELAKGDEVVTTGGMLGRVTEVGANFVKLEIAKDTEVKVQKHAIAQVMPKGTVK 321
            +D+ I +A AQ+A     GGL  FLPL I+F++FY  LIRPQMKR KEH KLV ELA GDE+VT GG+LGR+T VG +FV +E+  +  +KVQ+HA+A VMPKGT+K
Sbjct:    4 LDFFIASAHAQDAA--QPGGLMSFLPLIIIFVIFYFLLIRPQMKRAKEHKKLVSELANGDEIVTNGGLLGRITNVGESFVTVELTDNVRIKVQRHAVASVMPKGTIK 108          
BLAST of mRNA_P-wetherbeei_contig18170.1.1 vs. uniprot
Match: A7C3I5_9GAMM (Sec translocon accessory complex subunit YajC n=1 Tax=Beggiatoa sp. PS TaxID=422289 RepID=A7C3I5_9GAMM)

HSP 1 Score: 134 bits (337), Expect = 1.110e-38
Identity = 63/107 (58.88%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 MDYLIPNAWAQEAVGGAQGGLAGFLPLAILFLVFYLFLIRPQMKRQKEHAKLVRELAKGDEVVTTGGMLGRVTEVGANFVKLEIAKDTEVKVQKHAIAQVMPKGTVK 321
            MD+LI NAWAQ A G    GL   + L +LFLVFY  LIRPQ KR KEH ++V  LAKGDEVVT GG+LG++T++G NF+ LE++ +TE+KVQ+ ++A VMPKGT+K
Sbjct:    1 MDFLIQNAWAQAA-GQGDAGLINLIMLVVLFLVFYFLLIRPQTKRVKEHKQMVESLAKGDEVVTNGGLLGKITQLGDNFMTLEVSANTEIKVQRQSVAAVMPKGTLK 106          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18170.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y1YWA5_9GAMM1.180e-4264.15Sec translocon accessory complex subunit YajC n=1 ... [more]
I3CL03_9GAMM7.020e-4259.63Sec translocon accessory complex subunit YajC n=2 ... [more]
A0A7C1WAV9_9GAMM4.310e-4160.19Sec translocon accessory complex subunit YajC n=3 ... [more]
A0A7Y3HBI0_9GAMM2.200e-4061.32Sec translocon accessory complex subunit YajC n=1 ... [more]
A0A3M0YHM7_9GAMM6.700e-4063.89Sec translocon accessory complex subunit YajC n=1 ... [more]
A0A7Y2YY28_9GAMM6.900e-4059.81Sec translocon accessory complex subunit YajC n=1 ... [more]
A0A1Z4VR82_9GAMM7.560e-4059.26Sec translocon accessory complex subunit YajC n=3 ... [more]
A0A1G0KD00_9GAMM5.330e-3958.72Sec translocon accessory complex subunit YajC n=1 ... [more]
A0A7Y2YCJ7_9GAMM8.030e-3958.88Sec translocon accessory complex subunit YajC n=1 ... [more]
A7C3I5_9GAMM1.110e-3858.88Sec translocon accessory complex subunit YajC n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18170contigP-wetherbeei_contig18170:393..722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog395493.BegalDRAFT_3486
Preferred nameyajC
PFAMsYajC
Model size330
Max annot lvl72273|Thiotrichales
KEGG koko:K03210
KEGG TC3.A.5.1,3.A.5.2
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.15e-42
EggNOG OGsCOG1862@1|root,COG1862@2|Bacteria,1MZT2@1224|Proteobacteria,1S9NV@1236|Gammaproteobacteria,4613V@72273|Thiotrichales
DescriptionPreprotein translocase, YajC subunit
Cds size330
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186138.0586507-CDS-P-wetherbeei_contig18170:392..7221683186138.0586507-CDS-P-wetherbeei_contig18170:392..722Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18170 393..722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18170.1.1prot_P-wetherbeei_contig18170.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18170 393..722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18170.1.1

>prot_P-wetherbeei_contig18170.1.1 ID=prot_P-wetherbeei_contig18170.1.1|Name=mRNA_P-wetherbeei_contig18170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MDYLIPNAWAQEAVGGAQGGLAGFLPLAILFLVFYLFLIRPQMKRQKEHA
KLVRELAKGDEVVTTGGMLGRVTEVGANFVKLEIAKDTEVKVQKHAIAQV
MPKGTVKEM*
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mRNA from alignment at P-wetherbeei_contig18170:393..722+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18170.1.1 ID=mRNA_P-wetherbeei_contig18170.1.1|Name=mRNA_P-wetherbeei_contig18170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig18170:393..722+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTACCTGATACCAAATGCATGGGCTCAAGAAGCAGTAGGTGGCGC CCAGGGCGGCCTGGCCGGATTCCTGCCGCTGGCTATTTTGTTTCTGGTTT TCTACCTGTTCCTGATCCGGCCGCAGATGAAGCGCCAGAAGGAACACGCC AAGCTGGTGCGCGAGCTGGCCAAGGGCGACGAAGTGGTGACCACCGGCGG CATGTTGGGCAGAGTCACTGAGGTGGGCGCTAATTTCGTCAAGCTCGAAA TTGCCAAGGACACCGAGGTCAAGGTGCAGAAGCACGCCATCGCGCAAGTC ATGCCGAAAGGCACCGTCAAGGAAATGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18170:393..722+

>mRNA_P-wetherbeei_contig18170.1.1 ID=mRNA_P-wetherbeei_contig18170.1.1|Name=mRNA_P-wetherbeei_contig18170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig18170:393..722+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTACCTGATACCAAATGCATGGGCTCAAGAAGCAGTAGGTGGCGC
CCAGGGCGGCCTGGCCGGATTCCTGCCGCTGGCTATTTTGTTTCTGGTTT
TCTACCTGTTCCTGATCCGGCCGCAGATGAAGCGCCAGAAGGAACACGCC
AAGCTGGTGCGCGAGCTGGCCAAGGGCGACGAAGTGGTGACCACCGGCGG
CATGTTGGGCAGAGTCACTGAGGTGGGCGCTAATTTCGTCAAGCTCGAAA
TTGCCAAGGACACCGAGGTCAAGGTGCAGAAGCACGCCATCGCGCAAGTC
ATGCCGAAAGGCACCGTCAAGGAAATGTAA
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