mRNA_P-wetherbeei_contig18166.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18166.1.2
Unique NamemRNA_P-wetherbeei_contig18166.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18166.1.2 vs. uniprot
Match: D7FKE2_ECTSI (V-type proton ATPase subunit F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKE2_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.860e-34
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 1
Query:   10 MDESGKLIGIIGDEDTVTGFLLAGVGHRTATSTNFLVVKGDTPVGAIEDSFAQMTARDDVAIVLINQHVADEIRHVL 240
            MDESGKLI IIGDEDTVTGFLLAGVGHRT  +TNFLVVK DT V  IED+F ++TARDD+AIVLINQHVA+EIRH+L
Sbjct:    1 MDESGKLIAIIGDEDTVTGFLLAGVGHRTVNTTNFLVVKNDTTVSQIEDAFNRLTARDDIAIVLINQHVANEIRHLL 77          
BLAST of mRNA_P-wetherbeei_contig18166.1.2 vs. uniprot
Match: A0A6V1QDC6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QDC6_HETAK)

HSP 1 Score: 119 bits (298), Expect = 9.610e-32
Identity = 58/78 (74.36%), Postives = 67/78 (85.90%), Query Frame = 1
Query:   10 MDESGKLIGIIGDEDTVTGFLLAGVGHRTATSTNFLVVKGDTPVGAIEDSFAQMTARDDVAIVLINQHVADEIRHVLK 243
            M+ESGKLI IIGDEDTVTGFLLAG GHR   STNFLVVK DT +G IED+F + + R+DVAI+LINQHVA+EIRH+LK
Sbjct:    1 MEESGKLIAIIGDEDTVTGFLLAGAGHRQMGSTNFLVVKPDTSIGIIEDAFRRFSEREDVAIILINQHVANEIRHILK 78          
BLAST of mRNA_P-wetherbeei_contig18166.1.2 vs. uniprot
Match: A0A7S3JTZ6_9STRA (V-type proton ATPase subunit F n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTZ6_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.400e-31
Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   22 GKLIGIIGDEDTVTGFLLAGVGHRTATSTNFLVVKGDTPVGAIEDSFAQMTARDDVAIVLINQHVADEIRHVLK 243
            GKL+ IIGDEDTVTGFLLAGVGHRTA  +NFLVVKGDTPV  IE +F   T+RDD+ IVLINQH+A+EIRH+LK
Sbjct:    6 GKLVSIIGDEDTVTGFLLAGVGHRTADKSNFLVVKGDTPVNVIEHAFTDFTSRDDIGIVLINQHIANEIRHLLK 79          
BLAST of mRNA_P-wetherbeei_contig18166.1.2 vs. uniprot
Match: A0A7S2NRG7_9STRA (V-type proton ATPase subunit F n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NRG7_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.050e-31
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = 1
Query:   16 ESGKLIGIIGDEDTVTGFLLAGVGHRTATSTNFLVVKGDTPVGAIEDSFAQMTARDDVAIVLINQHVADEIRHVLK 243
            ++GKLI +IGDEDTVTGFLLAGVGHRTA +TNFLVVK DTP+  +ED+F   T RDD+ I+LINQHVA++IRHV+K
Sbjct:   11 DAGKLIAVIGDEDTVTGFLLAGVGHRTADTTNFLVVKADTPLNLVEDTFRAFTQRDDIGIILINQHVANQIRHVVK 86          
BLAST of mRNA_P-wetherbeei_contig18166.1.2 vs. uniprot
Match: K3WYT2_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WYT2_GLOUD)

HSP 1 Score: 117 bits (293), Expect = 5.490e-31
Identity = 54/77 (70.13%), Postives = 66/77 (85.71%), Query Frame = 1
Query:   10 MDESGKLIGIIGDEDTVTGFLLAGVGHRTATSTNFLVVKGDTPVGAIEDSFAQMTARDDVAIVLINQHVADEIRHVL 240
            M +  KLIG+IGDEDTVTGF+LAGVGHRTA  TNFLVVK  TP+ AIE++F  +T RDD+AI+LINQH+A+EIRH+L
Sbjct:    1 MSDGTKLIGVIGDEDTVTGFILAGVGHRTAEGTNFLVVKSTTPISAIEETFRTLTNRDDIAIILINQHIAEEIRHLL 77          
BLAST of mRNA_P-wetherbeei_contig18166.1.2 vs. uniprot
Match: W7TU11_9STRA (V-type proton ATPase subunit F n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU11_9STRA)

HSP 1 Score: 117 bits (292), Expect = 8.010e-31
Identity = 52/77 (67.53%), Postives = 66/77 (85.71%), Query Frame = 1
Query:   13 DESGKLIGIIGDEDTVTGFLLAGVGHRTATSTNFLVVKGDTPVGAIEDSFAQMTARDDVAIVLINQHVADEIRHVLK 243
            +E GKL+G+IGDEDTVTGFLLAGVGHRT    NFLVVK DTP+  +E++F ++T RDD+ IVLINQH+A++IRHV+K
Sbjct:    3 EEDGKLVGVIGDEDTVTGFLLAGVGHRTMEGANFLVVKNDTPLSLVEETFNRLTERDDIGIVLINQHIANDIRHVIK 79          
BLAST of mRNA_P-wetherbeei_contig18166.1.2 vs. uniprot
Match: A0A7S3HGA3_9STRA (V-type proton ATPase subunit F n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGA3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.480e-30
Identity = 54/81 (66.67%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    1 LAEMDESGKLIGIIGDEDTVTGFLLAGVGHRTATSTNFLVVKGDTPVGAIEDSFAQMTARDDVAIVLINQHVADEIRHVLK 243
            L  MDESGKLIG+IGDEDTVTGF+LAGVGHR A  +NFLVVK DT +  +E+ F ++TARDD+AIVLINQ +A++IRH+++
Sbjct:    8 LQVMDESGKLIGVIGDEDTVTGFVLAGVGHRNAEGSNFLVVKADTDIAVVEEFFKKLTARDDIAIVLINQTIANDIRHLIR 88          
BLAST of mRNA_P-wetherbeei_contig18166.1.2 vs. uniprot
Match: A0A067CU16_SAPPC (V-type proton ATPase subunit F n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CU16_SAPPC)

HSP 1 Score: 116 bits (290), Expect = 1.650e-30
Identity = 52/77 (67.53%), Postives = 68/77 (88.31%), Query Frame = 1
Query:   10 MDESGKLIGIIGDEDTVTGFLLAGVGHRTATSTNFLVVKGDTPVGAIEDSFAQMTARDDVAIVLINQHVADEIRHVL 240
            ++ + KL+G+IGDEDTVTGF+LAGVGHRTA  TNFLVVK  TP+  IED+F ++++RDD+AI+LINQHVA+EIRH+L
Sbjct:    3 LESATKLVGVIGDEDTVTGFILAGVGHRTAEGTNFLVVKPTTPISVIEDAFKRLSSRDDIAIILINQHVAEEIRHLL 79          
BLAST of mRNA_P-wetherbeei_contig18166.1.2 vs. uniprot
Match: H3G8L4_PHYRM (Uncharacterized protein n=22 Tax=Oomycota TaxID=4762 RepID=H3G8L4_PHYRM)

HSP 1 Score: 115 bits (289), Expect = 2.150e-30
Identity = 56/77 (72.73%), Postives = 65/77 (84.42%), Query Frame = 1
Query:   10 MDESGKLIGIIGDEDTVTGFLLAGVGHRTATSTNFLVVKGDTPVGAIEDSFAQMTARDDVAIVLINQHVADEIRHVL 240
            M +  KLI +IGDEDTVTGF+LAGVGHRTA  TNFLVVK +TP+ AIE SF  ++ RDDVAI+LINQHVADEIRH+L
Sbjct:    1 MSDGTKLIAVIGDEDTVTGFILAGVGHRTAEGTNFLVVKPNTPISAIEASFRSLSNRDDVAIILINQHVADEIRHLL 77          
BLAST of mRNA_P-wetherbeei_contig18166.1.2 vs. uniprot
Match: A0A7S1B3P9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3P9_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.150e-30
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = 1
Query:   16 ESGKLIGIIGDEDTVTGFLLAGVGHRTATSTNFLVVKGDTPVGAIEDSFAQMTARDDVAIVLINQHVADEIRHVLK 243
            E GKL+ +IGDEDTVTGFLLAGVGHRTA ++NFLVVK DTP+  IE++F  +TAR+DV I+LINQHVA+ IRHVLK
Sbjct:    2 EVGKLVAVIGDEDTVTGFLLAGVGHRTAKNSNFLVVKPDTPLPLIEETFTDLTAREDVGIILINQHVANNIRHVLK 77          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18166.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKE2_ECTSI1.860e-3480.52V-type proton ATPase subunit F n=2 Tax=Ectocarpus ... [more]
A0A6V1QDC6_HETAK9.610e-3274.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3JTZ6_9STRA1.400e-3175.68V-type proton ATPase subunit F n=1 Tax=Aureoumbra ... [more]
A0A7S2NRG7_9STRA5.050e-3171.05V-type proton ATPase subunit F n=1 Tax=Leptocylind... [more]
K3WYT2_GLOUD5.490e-3170.13Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
W7TU11_9STRA8.010e-3167.53V-type proton ATPase subunit F n=2 Tax=Monodopsida... [more]
A0A7S3HGA3_9STRA1.480e-3066.67V-type proton ATPase subunit F n=1 Tax=Spumella el... [more]
A0A067CU16_SAPPC1.650e-3067.53V-type proton ATPase subunit F n=4 Tax=Saprolegnia... [more]
H3G8L4_PHYRM2.150e-3072.73Uncharacterized protein n=22 Tax=Oomycota TaxID=47... [more]
A0A7S1B3P9_9STRA2.150e-3072.37Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18166contigP-wetherbeei_contig18166:165..1048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKE2
Preferred nameATP6V1F
PFAMsATP-synt_F
Model size504
Max annot lvl2759|Eukaryota
KEGG koko:K02151
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030641,GO:0031090,GO:0031164,GO:0031224,GO:0031410,GO:0031982,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033572,GO:0034220,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042624,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045851,GO:0046961,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
Exons3
Evalue1.39e-36
EggNOG OGsCOG1436@1|root,KOG3432@2759|Eukaryota
Ec32 ortholog descriptionATPase, V1 complex, subunit F
Ec32 orthologEc-05_005880.1
Descriptionproton-transporting ATPase activity, rotational mechanism
Cds size258
COG categoryC
BiGG ReactioniMM904.YGR020C,iND750.YGR020C
BRITEko00000,ko00001,ko00002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.847741-UTR-P-wetherbeei_contig18166:164..4011683186137.847741-UTR-P-wetherbeei_contig18166:164..401Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18166 165..401 -
1683186137.884022-UTR-P-wetherbeei_contig18166:1039..10481683186137.884022-UTR-P-wetherbeei_contig18166:1039..1048Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18166 1040..1048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.860148-CDS-P-wetherbeei_contig18166:401..5381683186137.860148-CDS-P-wetherbeei_contig18166:401..538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18166 402..538 -
1683186137.8677466-CDS-P-wetherbeei_contig18166:776..8551683186137.8677466-CDS-P-wetherbeei_contig18166:776..855Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18166 777..855 -
1683186137.8757915-CDS-P-wetherbeei_contig18166:997..10391683186137.8757915-CDS-P-wetherbeei_contig18166:997..1039Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18166 998..1039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18166.1.2prot_P-wetherbeei_contig18166.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18166 402..1039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18166.1.2

>prot_P-wetherbeei_contig18166.1.2 ID=prot_P-wetherbeei_contig18166.1.2|Name=mRNA_P-wetherbeei_contig18166.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MDESGKLIGIIGDEDTVTGFLLAGVGHRTATSTNFLVVKGDTPVGAIEDS
FAQMTARDDVAIVLINQHVADEIRHVLKVSASLRL*
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mRNA from alignment at P-wetherbeei_contig18166:165..1048-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18166.1.2 ID=mRNA_P-wetherbeei_contig18166.1.2|Name=mRNA_P-wetherbeei_contig18166.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=884bp|location=Sequence derived from alignment at P-wetherbeei_contig18166:165..1048- (Phaeothamnion wetherbeei SAG_119_79)
CTCGCAGAGATGGACGAATCCGGAAAGCTTATAGGGATTATAGGAGATGA GGTTAGGGAGAGGAGCTCATATGCCCGGTTTCACGCTTTGTTCACCCTGC TGCATGTCCTCTTTCATCCGGCCTTTCTCTGTTTTGGCACTTTATCAACT TTTTTACCAAGAAAGCTTTGCCATCGTGGTGTGTGTGACACAGGACACGG TCACCGGATTCTTGCTGGCGGGAGTAGGACATCGTACTGCAACAAGCACA AATTTCCTCGTCGTGAAGGGCGGTAAGAACCTATCCGACCTGTTGGAATG TCCTTTGTGCAGACCGTGGTCTAGCGCGTTCTTTTCTGCTCTGTCTTACG CGTCCCGATTTCTGTGCCGCTTCCACGTGCCTCTTCGTGCCGCCAATGTG CACTCTGGTGTAGAAGCATGCTTATATCGTTGCAACCGCACCCTTTGTGG CGCCAACACCAGCGTTGCCCCGCTATCACCACCCCACTGCCTCCCGCCGC TAAAATTCAGACACACCGGTGGGCGCGATCGAGGATTCCTTCGCGCAGAT GACGGCGCGGGACGACGTCGCCATCGTCCTCATCAACCAACACGTCGCCG ACGAAATTCGACACGTCCTCAAGGTGAGCGCATCGTTGAGACTCTAACTT CATTTTCATATTGATTCTAACTGCATTCGCCCGGTGAGCGTAAGCTGAAT TTGAAAGCCATGTTATCGGCACGCATCAGGAGGCAGCTGACTCATGGGGA AGGATTTTGCCCATTTTCGGTTTGGCAATGAAAAATTTGGAGGAGGGAGG CTTGTGCAGCCAGCCAGTTGCATGCACTCTTTATTGAAAATCTTATCTTC GCTGGGGGATGTGGTGGTGGGGACGATCGAGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18166:165..1048-

>mRNA_P-wetherbeei_contig18166.1.2 ID=mRNA_P-wetherbeei_contig18166.1.2|Name=mRNA_P-wetherbeei_contig18166.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig18166:165..1048- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGAATCCGGAAAGCTTATAGGGATTATAGGAGATGAGGACACGGT
CACCGGATTCTTGCTGGCGGGAGTAGGACATCGTACTGCAACAAGCACAA
ATTTCCTCGTCGTGAAGGGCGACACACCGGTGGGCGCGATCGAGGATTCC
TTCGCGCAGATGACGGCGCGGGACGACGTCGCCATCGTCCTCATCAACCA
ACACGTCGCCGACGAAATTCGACACGTCCTCAAGGTGAGCGCATCGTTGA
GACTCTAA
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