mRNA_P-wetherbeei_contig18163.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18163.2.1
Unique NamemRNA_P-wetherbeei_contig18163.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18163.2.1 vs. uniprot
Match: A0A8B7N739_HYAAZ (LOW QUALITY PROTEIN: uncharacterized protein LOC108664000 n=2 Tax=Crustacea TaxID=6657 RepID=A0A8B7N739_HYAAZ)

HSP 1 Score: 129 bits (325), Expect = 9.190e-37
Identity = 76/108 (70.37%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:    1 QTANTDECELGRQTPGANVRRRKGNNPDHQLRSPNTHAGDIGSANADMSSDKGWFLEP--EVADTKLPGKATKLQLNRTVPQTDTGGQDENSKALERTQEKELGKLTP 318
            QT NTDE  LG + PGANVR ++GNNPD QLR     AG I SANADMSS KG    P  EV+DT LPGKATKLQL  TVPQTDTG +DE SKALERT EKELGKLTP
Sbjct:   13 QTPNTDEYSLGDRAPGANVRTQEGNNPDRQLRWIVRSAGGIRSANADMSSVKGGEKPPRHEVSDTLLPGKATKLQLXTTVPQTDTGARDEYSKALERTLEKELGKLTP 120
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BLAST of mRNA_P-wetherbeei_contig18163.2.1 vs. uniprot
Match: A0A7C9PGD3_9BURK (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7C9PGD3_9BURK)

HSP 1 Score: 77.0 bits (188), Expect = 9.340e-17
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:  175 EVADTKLPGKATKLQLNRTVPQTDTGGQDENSKALERTQEKELGKLTP 318
            EV+DT LPGKATKLQL+ TVPQTDTG +DE S+ALERT EKELGKLTP
Sbjct:    4 EVSDTLLPGKATKLQLHTTVPQTDTGARDEYSQALERTLEKELGKLTP 51
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BLAST of mRNA_P-wetherbeei_contig18163.2.1 vs. uniprot
Match: A0A078BGN6_9BURK (Uncharacterized protein n=1 Tax=Thiomonas sp. CB2 TaxID=554131 RepID=A0A078BGN6_9BURK)

HSP 1 Score: 73.6 bits (179), Expect = 2.450e-15
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:  166 LEPEVADTKLPGKATKLQLNRTVPQTDTGGQDENSKALERTQEKELGKLTP 318
            L  EV DT LP KATKLQL+ TVPQTDTG +DE SKALERT+EKELGK  P
Sbjct:    6 LAAEVIDTLLPRKATKLQLDTTVPQTDTGARDEYSKALERTREKELGKFVP 56
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BLAST of mRNA_P-wetherbeei_contig18163.2.1 vs. uniprot
Match: A0A7S3IDR3_9CILI (Hypothetical protein (Fragment) n=1 Tax=Anophryoides haemophila TaxID=46462 RepID=A0A7S3IDR3_9CILI)

HSP 1 Score: 73.6 bits (179), Expect = 2.190e-14
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = -1 
Query:  196 LRCQFAEFLLLSSLKRLRIFILPTCVGLRYGPVQLKLSGFSW 321
            LR QFAEFLL SSLKRLRI I PTCVGLRYGPV+LKL GFSW
Sbjct:   43 LRYQFAEFLLPSSLKRLRILISPTCVGLRYGPVKLKLRGFSW 84
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BLAST of mRNA_P-wetherbeei_contig18163.2.1 vs. uniprot
Match: A0A8J3CMP5_9BURK (Uncharacterized protein n=1 Tax=Formosimonas limnophila TaxID=1384487 RepID=A0A8J3CMP5_9BURK)

HSP 1 Score: 70.9 bits (172), Expect = 2.200e-14
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:  193 LPGKATKLQLNRTVPQTDTGGQDENSKALERTQEKELGKLTP 318
            +P KATKLQL++TVPQTDTGG+DE SKALERT EKELGKLTP
Sbjct:    4 VPRKATKLQLHKTVPQTDTGGRDEYSKALERTAEKELGKLTP 45
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BLAST of mRNA_P-wetherbeei_contig18163.2.1 vs. uniprot
Match: A0A250KVU2_9GAMM (Uncharacterized protein n=1 Tax=Methylocaldum marinum TaxID=1432792 RepID=A0A250KVU2_9GAMM)

HSP 1 Score: 69.7 bits (169), Expect = 8.240e-14
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  160 WFLEPEVADTKLPGKATKLQLNRTVPQTDTGGQDENSKALERTQEKELGKLTP 318
            WF + EV D +LP K +KLQ+     +TDTGGQDENSKALERT+ KELGK+ P
Sbjct:    5 WFAKTEVIDARLPRKTSKLQVTSGRTKTDTGGQDENSKALERTRVKELGKMVP 57
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BLAST of mRNA_P-wetherbeei_contig18163.2.1 vs. uniprot
Match: A0A382RXT4_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382RXT4_9ZZZZ)

HSP 1 Score: 67.0 bits (162), Expect = 8.440e-13
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:  175 EVADTKLPGKATKLQLNRTVPQTDTGGQDENSKALERTQEKELGKL 312
            EV D  LPGKA+K +L RTVPQTDTGGQ EN+KALERT+ KELGK+
Sbjct:    7 EVVDAMLPGKASKHRLLRTVPQTDTGGQVENTKALERTRVKELGKM 52
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BLAST of mRNA_P-wetherbeei_contig18163.2.1 vs. uniprot
Match: A0A2Z6ESZ2_9BURK (Uncharacterized protein n=1 Tax=Mycoavidus cysteinexigens TaxID=1553431 RepID=A0A2Z6ESZ2_9BURK)

HSP 1 Score: 67.0 bits (162), Expect = 1.520e-12
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:  193 LPGKATKLQLNRTVPQTDTGGQDENSKALERTQEKELGKLTP 318
            +P KA+KLQ N TVPQTDTGG+DE SKALERT+EKELGKL P
Sbjct:   35 VPRKASKLQSNETVPQTDTGGRDEYSKALERTREKELGKLVP 76
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BLAST of mRNA_P-wetherbeei_contig18163.2.1 vs. uniprot
Match: A0A8D8N7S7_CULPI ((northern house mosquito) hypothetical protein n=3 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8N7S7_CULPI)

HSP 1 Score: 65.5 bits (158), Expect = 1.180e-11
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:  160 WFLEPEVADTK--LPGKATKLQLNRTVPQTDTGGQDENSKALERTQEKELGKLTP 318
            W   P  A     +P KA+KLQ   TVPQTDTGG+DE SKALERT+EKELGKL P
Sbjct:   48 WGERPSAAKQSEGVPRKASKLQSYETVPQTDTGGRDEYSKALERTREKELGKLVP 102
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BLAST of mRNA_P-wetherbeei_contig18163.2.1 vs. uniprot
Match: E0XWP1_9PROT (Uncharacterized protein n=2 Tax=Betaproteobacteria TaxID=28216 RepID=E0XWP1_9PROT)

HSP 1 Score: 63.9 bits (154), Expect = 1.480e-11
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:  193 LPGKATKLQLNRTVPQTDTGGQDENSKALERTQEKELGKLTP 318
            +P KA+KLQ   TVPQTDTGG+DE SKALERT+EKELGKL P
Sbjct:   14 VPRKASKLQSYETVPQTDTGGRDEYSKALERTREKELGKLVP 55
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18163.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B7N739_HYAAZ9.190e-3770.37LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
A0A7C9PGD3_9BURK9.340e-1781.25Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A078BGN6_9BURK2.450e-1574.51Uncharacterized protein n=1 Tax=Thiomonas sp. CB2 ... [more]
A0A7S3IDR3_9CILI2.190e-1485.71Hypothetical protein (Fragment) n=1 Tax=Anophryoid... [more]
A0A8J3CMP5_9BURK2.200e-1483.33Uncharacterized protein n=1 Tax=Formosimonas limno... [more]
A0A250KVU2_9GAMM8.240e-1462.26Uncharacterized protein n=1 Tax=Methylocaldum mari... [more]
A0A382RXT4_9ZZZZ8.440e-1373.91Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A2Z6ESZ2_9BURK1.520e-1278.57Uncharacterized protein n=1 Tax=Mycoavidus cystein... [more]
A0A8D8N7S7_CULPI1.180e-1163.64(northern house mosquito) hypothetical protein n=3... [more]
E0XWP1_9PROT1.480e-1176.19Uncharacterized protein n=2 Tax=Betaproteobacteria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18163contigP-wetherbeei_contig18163:228..1119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog762966.HMPREF9439_01517
Model size321
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.95e-08
EggNOG OGs2DRJP@1|root,33C2Q@2|Bacteria,1NGIR@1224|Proteobacteria
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.8071268-CDS-P-wetherbeei_contig18163:227..3881683186137.8071268-CDS-P-wetherbeei_contig18163:227..388Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18163 228..388 -
1683186137.8156073-CDS-P-wetherbeei_contig18163:636..6881683186137.8156073-CDS-P-wetherbeei_contig18163:636..688Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18163 637..688 -
1683186137.8234437-CDS-P-wetherbeei_contig18163:1011..11191683186137.8234437-CDS-P-wetherbeei_contig18163:1011..1119Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18163 1012..1119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18163.2.1prot_P-wetherbeei_contig18163.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18163 228..1119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18163.2.1

>prot_P-wetherbeei_contig18163.2.1 ID=prot_P-wetherbeei_contig18163.2.1|Name=mRNA_P-wetherbeei_contig18163.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
QTANTDECELGRQTPGANVRRRKGNNPDHQLRSPNTHAGDIGSANADMSS
DKGWFLEPEVADTKLPGKATKLQLNRTVPQTDTGGQDENSKALERTQEKE
LGKLTP*
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mRNA from alignment at P-wetherbeei_contig18163:228..1119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18163.2.1 ID=mRNA_P-wetherbeei_contig18163.2.1|Name=mRNA_P-wetherbeei_contig18163.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=892bp|location=Sequence derived from alignment at P-wetherbeei_contig18163:228..1119- (Phaeothamnion wetherbeei SAG_119_79)
CAAACTGCGAATACCGATGAGTGCGAGCTTGGGAGACAGACGCCGGGTGC
TAACGTCCGACGTCGAAAGGGAAACAACCCAGACCACCAGCTAAGGTCCC
CAAACACAGTTAAGTGGAAAACGAAGTGGGAAGGCTAAAACAGTCAGGAT
GTTGGCTTAGAAGCAGCCACCATTTAAAGAAAGCGTAATAGCTCACTGAT
CGAGTCGTCCTGCGCGGAAGATGTAACGGGGCTAAACTGTGTACCGAAGC
TGTGGATTTGTGCATCCCACCTTAATTTATTGGCACGAGTTGTCGGCGGA
TCGCGAAGCGATTCACCTGACAAAGCGCTCAACACTGATCGAAATGGTGT
TGAAAGCGGTGCTAGTGAATTAAGGGGGATGCACAGATGGTAGGAGAGCG
TTCCGTAGGTCTGTGAAGGCGTGTTGAGAAGCACGCTGGAGATATCGGAA
GTGCGAATGCTGACATGAGTAGCGATAAAGGGTGTGAAAAGCACCCTCGC
CGAAAGCCCGAGGTTTCCTGCGCAACGTTCATCGGCGCAGGGTGAGTCGG
CCCCTAAGGAGAGGGCGAAAGCCGTATCTGATGGGAAGCTGGTTAATATT
CCAGCACCACTGTTCAATGCGATGTGGGGACGGAGAAGGTTATGCAAGCC
GGGTGTTGGACGTCCCGGTTCAAGCGTGTAGTCGTGCTGCCTAGGCAAAT
CCGGGCGGCTTAGATGAGGCGTGATAACGAGGGTTCTTAGAACCTGAAGT
TGCGGATACCAAGCTTCCAGGAAAAGCCACTAAGCTTCAGTTGAACAGGA
CCGTACCGCAAACCGACACAGGTGGGCAGGATGAAAATTCTAAGGCGCTT
GAGAGAACTCAGGAGAAGGAACTCGGCAAATTGACACCGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18163:228..1119-

>mRNA_P-wetherbeei_contig18163.2.1 ID=mRNA_P-wetherbeei_contig18163.2.1|Name=mRNA_P-wetherbeei_contig18163.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig18163:228..1119- (Phaeothamnion wetherbeei SAG_119_79)
CAAACTGCGAATACCGATGAGTGCGAGCTTGGGAGACAGACGCCGGGTGC
TAACGTCCGACGTCGAAAGGGAAACAACCCAGACCACCAGCTAAGGTCCC
CAAACACACACGCTGGAGATATCGGAAGTGCGAATGCTGACATGAGTAGC
GATAAAGGGTGGTTCTTAGAACCTGAAGTTGCGGATACCAAGCTTCCAGG
AAAAGCCACTAAGCTTCAGTTGAACAGGACCGTACCGCAAACCGACACAG
GTGGGCAGGATGAAAATTCTAAGGCGCTTGAGAGAACTCAGGAGAAGGAA
CTCGGCAAATTGACACCGTAA
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