mRNA_P-wetherbeei_contig18161.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18161.1.1
Unique NamemRNA_P-wetherbeei_contig18161.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18161.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18161contigP-wetherbeei_contig18161:144..1133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSP6
PFAMsNUDIX
Model size990
Max annot lvl2759|Eukaryota
KEGG koko:K18665
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000242
EggNOG OGsCOG0494@1|root,KOG3069@2759|Eukaryota
DescriptionCoA pyrophosphatase activity
Cds size630
COG categoryL
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.7605028-UTR-P-wetherbeei_contig18161:143..4391683186137.7605028-UTR-P-wetherbeei_contig18161:143..439Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18161 144..439 -
1683186137.7795568-UTR-P-wetherbeei_contig18161:1069..11331683186137.7795568-UTR-P-wetherbeei_contig18161:1069..1133Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18161 1070..1133 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.7702277-CDS-P-wetherbeei_contig18161:439..10691683186137.7702277-CDS-P-wetherbeei_contig18161:439..1069Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18161 440..1069 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18161.1.1prot_P-wetherbeei_contig18161.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18161 440..1069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18161.1.1

>prot_P-wetherbeei_contig18161.1.1 ID=prot_P-wetherbeei_contig18161.1.1|Name=mRNA_P-wetherbeei_contig18161.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=210bp
MLSSAAAARTNAGAARGATSPSDYDDGKRSVRTGACGERGATIPVRFPEA
ERSATVDGGGPQEHEGRRWEVLSQKNVHAAEWTTLLSGAKSPPPPRMEIN
SMISNSAKMGVLHPVKHIDVKRLTQEFPAPLLARALREREDALHACSRLV
EAMELGNPDEVFANMHAILAPFKPHAVIRRHASGELARRPELPVPLTDEG
LVGALHDGP*
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mRNA from alignment at P-wetherbeei_contig18161:144..1133-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18161.1.1 ID=mRNA_P-wetherbeei_contig18161.1.1|Name=mRNA_P-wetherbeei_contig18161.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig18161:144..1133- (Phaeothamnion wetherbeei SAG_119_79)
CTTGAGAATCGTTGCGCCAGCAGCGCAGTGTGTAACCTACGCTCTTGGCG
TGGCGTGCGCGCGCATGCTGAGCTCCGCGGCGGCCGCAAGGACCAACGCC
GGCGCAGCGCGAGGAGCGACGAGCCCAAGTGACTACGACGATGGAAAGAG
GAGCGTGAGGACCGGCGCATGTGGAGAGCGAGGAGCGACGATCCCGGTTC
GGTTCCCCGAAGCCGAGAGGAGTGCGACGGTCGACGGCGGCGGACCGCAG
GAGCATGAAGGCAGGAGATGGGAGGTGCTTTCCCAAAAGAACGTTCACGC
GGCAGAGTGGACGACTCTACTTTCGGGCGCAAAATCCCCTCCCCCGCCGC
GAATGGAAATCAACTCGATGATCAGCAACTCGGCCAAGATGGGCGTCCTG
CACCCAGTGAAACACATCGACGTCAAGCGACTCACCCAAGAATTCCCGGC
GCCACTCCTGGCGCGCGCGCTGCGCGAGCGCGAAGACGCTCTCCATGCCT
GTTCGAGACTAGTGGAGGCGATGGAGTTGGGGAACCCCGACGAGGTGTTC
GCCAACATGCACGCCATCTTGGCGCCCTTCAAGCCGCATGCAGTCATTCG
TCGCCATGCGAGCGGCGAACTGGCGCGCCGGCCGGAGCTACCCGTGCCCC
TGACCGATGAGGGGCTCGTCGGCGCGCTACACGACGGGCCATGACCCACG
CGGCCACGGCGGCGGCGGCGACGGCAGTGACGGCGACGGGAGCCACGGCC
ACAGCAACTGGGGCAGCGGGGCCGGCGGCGGCGGCGGTGGCGGCGGCGGC
AGCGGCCGTGGCGGCATCGGCAGCAGCGGAGGTGCGCCTACTGCGGAATC
AAGTCGGTAAACCCCGCTGCCGCCTCTACGGCGGCGGCTACGACCGGCGA
CGGGCATGCGCTGTCTGTAGCCGCTCCATCATTGCTTCCCCGGGGCCGAA
GGTGAAGCTCGGCAGGACCGGCAACGGCAGTCGCAGCATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18161:144..1133-

>mRNA_P-wetherbeei_contig18161.1.1 ID=mRNA_P-wetherbeei_contig18161.1.1|Name=mRNA_P-wetherbeei_contig18161.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=630bp|location=Sequence derived from alignment at P-wetherbeei_contig18161:144..1133- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAGCTCCGCGGCGGCCGCAAGGACCAACGCCGGCGCAGCGCGAGG
AGCGACGAGCCCAAGTGACTACGACGATGGAAAGAGGAGCGTGAGGACCG
GCGCATGTGGAGAGCGAGGAGCGACGATCCCGGTTCGGTTCCCCGAAGCC
GAGAGGAGTGCGACGGTCGACGGCGGCGGACCGCAGGAGCATGAAGGCAG
GAGATGGGAGGTGCTTTCCCAAAAGAACGTTCACGCGGCAGAGTGGACGA
CTCTACTTTCGGGCGCAAAATCCCCTCCCCCGCCGCGAATGGAAATCAAC
TCGATGATCAGCAACTCGGCCAAGATGGGCGTCCTGCACCCAGTGAAACA
CATCGACGTCAAGCGACTCACCCAAGAATTCCCGGCGCCACTCCTGGCGC
GCGCGCTGCGCGAGCGCGAAGACGCTCTCCATGCCTGTTCGAGACTAGTG
GAGGCGATGGAGTTGGGGAACCCCGACGAGGTGTTCGCCAACATGCACGC
CATCTTGGCGCCCTTCAAGCCGCATGCAGTCATTCGTCGCCATGCGAGCG
GCGAACTGGCGCGCCGGCCGGAGCTACCCGTGCCCCTGACCGATGAGGGG
CTCGTCGGCGCGCTACACGACGGGCCATGA
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