mRNA_P-wetherbeei_contig1816.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1816.1.1
Unique NamemRNA_P-wetherbeei_contig1816.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1816.1.1 vs. uniprot
Match: A0A7S3UTR3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTR3_HETAK)

HSP 1 Score: 96.7 bits (239), Expect = 2.490e-21
Identity = 53/101 (52.48%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 RNTRLRKKEYVSKLKQLVQELSATKEREDSERRLCDTRSAETRELRKQVVQLFFHYRCVGERDRARWAVIVDETVTLTLPITPYRSFRRSEIVNNSRVLFG 303
            RNTRLRKK YV KLKQ V +L A +E +++E+R       E   L+ Q VQ FF+YR  GE DR RWA +++E V LT PITPYRSF   E+V N R + G
Sbjct:  141 RNTRLRKKVYVEKLKQTVAQLGAEREIKEAEKRTKKXXXEEEIALKFQAVQTFFYYRATGELDRGRWAALLEEDVVLTQPITPYRSFDAREVVQNMREVRG 241
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BLAST of mRNA_P-wetherbeei_contig1816.1.1 vs. uniprot
Match: K8Z3H6_NANGC (Uncharacterized protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3H6_NANGC)

HSP 1 Score: 87.8 bits (216), Expect = 1.550e-20
Identity = 49/101 (48.51%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:    1 RNTRLRKKEYVSKLKQLVQELSATKEREDSERRLCDTRSAETRELRKQVVQLFFHYRCVGERDRARWAVIVDETVTLTLPITPYRSFRRSEIVNNSRVLFG 303
            RNTRLRKK Y  KLK+LV +L   +E ED  + +  +R+ E    R  VV  F H R   ERDR +WA ++DE   LTLPITPYR F R E+    RV+ G
Sbjct:    1 RNTRLRKKAYTKKLKELVDDLERQREEEDRAKDVLASRALEEVHHRNTVVHSFLHCRARDERDRRKWAQVLDEDCVLTLPITPYRFFPRGEVHKGVRVVQG 101
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BLAST of mRNA_P-wetherbeei_contig1816.1.1 vs. uniprot
Match: W7TH74_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TH74_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.310e-18
Identity = 49/101 (48.51%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:    1 RNTRLRKKEYVSKLKQLVQELSATKEREDSERRLCDTRSAETRELRKQVVQLFFHYRCVGERDRARWAVIVDETVTLTLPITPYRSFRRSEIVNNSRVLFG 303
            RNTRLRKK Y  KLK+LV +L   ++ ED  + +  +R+ E    R  VV  F H R   ERDR +WA ++DE   LTLPITPYR F R E+ N  RV+ G
Sbjct:  402 RNTRLRKKAYTKKLKELVDDLERQRKEEDRAKDVLASRALEEVHHRNTVVHSFLHCRARDERDRRKWAQVLDEDCVLTLPITPYRFFPRGEVHNGVRVVQG 502
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BLAST of mRNA_P-wetherbeei_contig1816.1.1 vs. uniprot
Match: A0A1E7G026_9STRA (Basic leucine zipper domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7G026_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.220e-17
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 RNTRLRKKEYVSKLKQLVQELSATKEREDSERRLCDTRSAETRELRKQVVQLFFHYRCVGERDRARWAVIVDETVTLTLPITPYRSFRRSEIVNNSRVLFG 303
            R+TRLRKK YVSKLK+LV+ L A +  E  +RR+     AET+++R+ VV+ F  ++   E D+ +W  ++++   L  P+TPYR FRRSEI N SR   G
Sbjct:  305 RSTRLRKKAYVSKLKELVEGLHAERTEEVRQRRVAIQHLAETQDVRRAVVRSFLRFQSSYETDKRKWMTLLEDDFWLKQPVTPYRCFRRSEIKNESRFTRG 405
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BLAST of mRNA_P-wetherbeei_contig1816.1.1 vs. uniprot
Match: B8CAF7_THAPS (PAS domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAF7_THAPS)

HSP 1 Score: 82.8 bits (203), Expect = 2.470e-16
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 RNTRLRKKEYVSKLKQLVQELSATKEREDSERRLCDTRSAETRELRKQVVQLFFHYRCVGERDRARWAVIVDETVTLTLPITPYRSFRRSEIVNNSRVLFG 303
            R TRLRKK YVSKLK+LV  L A +  +  +RR+     AE +++R++V+  F  Y    E D  +W  I++E   L  P+TPYRSFRR+EI   SR+L G
Sbjct:  342 RCTRLRKKAYVSKLKELVDGLQAERSEDSRKRRVAVQHLAEIQDIRRKVMHTFLGYHAKFEGDVGKWKTILEEDFWLKQPVTPYRSFRRTEIDKGSRILKG 442
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BLAST of mRNA_P-wetherbeei_contig1816.1.1 vs. uniprot
Match: A0A7S2YSB7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSB7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.430e-16
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 RNTRLRKKEYVSKLKQLVQELSATKEREDSERRLCDTRSAETRELRKQVVQLFFHYRCVGERDRARWAVIVDETVTLTLPITPYRSFRRSEIVNNSRVLFG 303
            R+TRLRKK YV KLK+LV+ L A +  E  +RR+     AE + +R+ VV+ F  +R   E D  +WA ++++   L  P+TPYRSFRRSEI    R+  G
Sbjct:  199 RSTRLRKKAYVQKLKELVECLHAERTEEVRQRRVAIQHLAEKQNVRRSVVRNFLRFRTTCETDHRKWATLLEDDFWLKQPVTPYRSFRRSEIEQECRISKG 299
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BLAST of mRNA_P-wetherbeei_contig1816.1.1 vs. uniprot
Match: A0A7S4DJE8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJE8_HETAK)

HSP 1 Score: 81.6 bits (200), Expect = 6.080e-16
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    1 RNTRLRKKEYVSKLKQLVQELSATKEREDSERRLCDTRSAETRELRKQVVQLFFHYRCVGERDRARWAVIVDETVTLTLPITPYRSFRRSEIV 279
            RNTRLRKK Y+ KLK  V EL A +ER + E R+   R+A+ R +R QV+  F   R  GE    +W+ ++DE   LTLP TPYRSF +SE+V
Sbjct:  209 RNTRLRKKLYIEKLKAQVDELQAAQERREREERVRAQRAADRRRVRVQVLTDFLLCRGTGEASYQQWSTLLDERFALTLPATPYRSFLQSELV 301
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BLAST of mRNA_P-wetherbeei_contig1816.1.1 vs. uniprot
Match: A0A7S2G9F8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9F8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.230e-16
Identity = 48/101 (47.52%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:    7 TRLRKKEYVSKLKQLVQELSATKEREDSERRLCDTRSAETRELRKQVVQLFFHYRCVGERDRARWAVIVDE-TVTLTLPITPYRSFRRSEIVNNS-RVLFG 303
            TRLRKK YV  L++   EL+    R   ER   +       E R++VV    HYR  G  DR +WA IVDE   TL LP+TPYRSF+RSE+V N  R+L G
Sbjct:   59 TRLRKKVYVKCLEEQATELAEQNNRMKQEREWREANRRAVLETRRRVVHTMLHYRHAGVTDRNKWAKIVDEGRFTLALPVTPYRSFKRSEVVGNGLRILHG 159
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BLAST of mRNA_P-wetherbeei_contig1816.1.1 vs. uniprot
Match: K0T5A6_THAOC (PAS domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5A6_THAOC)

HSP 1 Score: 79.3 bits (194), Expect = 4.040e-15
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:    7 TRLRKKEYVSKLKQLVQELSATKEREDSERRLCDTRSAETRELRKQVVQLFF-HYRCVGERDRARWAVIVDETVTLTLPITPYRSFRRSEIVNNSRVLFG 303
            TR+RKK YV+KLK+LV  L A +  +   RR+     AE ++LR++VV+ F  ++      DR  WA I++E   +  P+TPYRSFRRSEI   SR+L G
Sbjct:  265 TRVRKKAYVNKLKELVDGLHAERNEDARRRRVAVRHLAEIQDLRRRVVRTFLRNHAAYDSSDRTGWATILEENFWMKQPVTPYRSFRRSEIQKQSRILKG 364
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BLAST of mRNA_P-wetherbeei_contig1816.1.1 vs. uniprot
Match: A0A448Z3B2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3B2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.920e-14
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 RNTRLRKKEYVSKLKQLVQELSATKEREDSERRLCDTRSAETRELRKQVVQLFFHYRCVGERDRARWAVIVDETVTLTLPITPYRSFRRSEIVNNSRVLFG 303
            R+TRLRKK YVSKLK+LV  L A +  E  +RR+     AET+++R+ VV+ F  +    E D+ +W  ++++      P+T YR FRRSEI  NSR+  G
Sbjct:  308 RSTRLRKKAYVSKLKELVDGLHAERTEEVRQRRVAIQHLAETQDVRRAVVRSFLRFHSSYESDKRKWTTLLEDNFWFKQPVTXYRCFRRSEI-ENSRITRG 407
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1816.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UTR3_HETAK2.490e-2152.48Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K8Z3H6_NANGC1.550e-2048.51Uncharacterized protein (Fragment) n=2 Tax=Nannoch... [more]
W7TH74_9STRA2.310e-1848.51Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A1E7G026_9STRA5.220e-1745.54Basic leucine zipper domain-containing protein n=1... [more]
B8CAF7_THAPS2.470e-1645.54PAS domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S2YSB7_9STRA4.430e-1644.55Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S4DJE8_HETAK6.080e-1649.46Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2G9F8_9STRA8.230e-1647.52Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
K0T5A6_THAOC4.040e-1545.00PAS domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A448Z3B2_9STRA1.920e-1443.56Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1816contigP-wetherbeei_contig1816:1726..2411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps24507
Model size303
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.05e-17
EggNOG OGs2EGGA@1|root,2SMEH@2759|Eukaryota,2XADF@2836|Bacillariophyta
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.663504-CDS-P-wetherbeei_contig1816:1725..18691683186137.663504-CDS-P-wetherbeei_contig1816:1725..1869Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1816 1726..1869 +
1683186137.6718502-CDS-P-wetherbeei_contig1816:2252..24111683186137.6718502-CDS-P-wetherbeei_contig1816:2252..2411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1816 2253..2411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1816.1.1prot_P-wetherbeei_contig1816.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1816 1726..2411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1816.1.1

>prot_P-wetherbeei_contig1816.1.1 ID=prot_P-wetherbeei_contig1816.1.1|Name=mRNA_P-wetherbeei_contig1816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
RNTRLRKKEYVSKLKQLVQELSATKEREDSERRLCDTRSAETRELRKQVV
QLFFHYRCVGERDRARWAVIVDETVTLTLPITPYRSFRRSEIVNNSRVLF
G
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mRNA from alignment at P-wetherbeei_contig1816:1726..2411+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1816.1.1 ID=mRNA_P-wetherbeei_contig1816.1.1|Name=mRNA_P-wetherbeei_contig1816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=686bp|location=Sequence derived from alignment at P-wetherbeei_contig1816:1726..2411+ (Phaeothamnion wetherbeei SAG_119_79)
CGCAACACGCGGTTGCGCAAAAAGGAATACGTGAGCAAGCTGAAGCAGCT
GGTGCAAGAGCTCAGCGCCACGAAGGAGCGCGAGGACTCGGAGCGGCGGC
TCTGCGACACGCGGTCCGCGGAGACGCGGGAGCTGCGGAAGCAGGTAATG
TTATTGATCGCGGGACTTTTGCGAGGCGCGCCGCTTCTCGCCATGGTGTT
TCCCTGACAGCGTTGTTTCGCGCTGCCGCCGCTGCCCCCATCGCCGCGCC
AAGCGGTTCCGGGCTTGTGGCTGTCTGTGCCGGTTTCCTTTTTGCCACGG
GCTGGGGATGCGGTTTGCGAAGAGCGTTGCAAAGTCTCAGTCTTCCGACT
TCTCACTGTTTGCTTTCATCTATGTTTGCTTCTCGCCCCGGCTTCTGGTT
CTGCGGTCGCATGGCCGCCACCGCCGCCGCCCTCGCAGTTCTCCCCTCCC
TTTCCGCCTCCCGCGACAACAAATTACCGATAAAACGGAAACGAACGTGA
AAATGAAAACAAAACAAAAAAACACAGGTCGTGCAACTCTTCTTCCACTA
CCGCTGCGTGGGGGAGCGAGACCGCGCGCGATGGGCCGTCATCGTCGACG
AAACCGTCACGCTGACGCTGCCCATCACGCCCTACCGCAGCTTTCGCCGC
TCGGAGATCGTCAACAACTCTCGCGTACTCTTCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1816:1726..2411+

>mRNA_P-wetherbeei_contig1816.1.1 ID=mRNA_P-wetherbeei_contig1816.1.1|Name=mRNA_P-wetherbeei_contig1816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig1816:1726..2411+ (Phaeothamnion wetherbeei SAG_119_79)
CGCAACACGCGGTTGCGCAAAAAGGAATACGTGAGCAAGCTGAAGCAGCT
GGTGCAAGAGCTCAGCGCCACGAAGGAGCGCGAGGACTCGGAGCGGCGGC
TCTGCGACACGCGGTCCGCGGAGACGCGGGAGCTGCGGAAGCAGGTCGTG
CAACTCTTCTTCCACTACCGCTGCGTGGGGGAGCGAGACCGCGCGCGATG
GGCCGTCATCGTCGACGAAACCGTCACGCTGACGCTGCCCATCACGCCCT
ACCGCAGCTTTCGCCGCTCGGAGATCGTCAACAACTCTCGCGTACTCTTC
GGC
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