mRNA_P-wetherbeei_contig18154.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18154.1.1
Unique NamemRNA_P-wetherbeei_contig18154.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18154.1.1 vs. uniprot
Match: K3X7U1_GLOUD (PHD-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7U1_GLOUD)

HSP 1 Score: 70.5 bits (171), Expect = 1.980e-10
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 3
Query:  138 KGVLMTINPD--DDLAYCAVCDNGDSLETDAIVICELCNVATHQSCYGIEVVPPGEEPWLCNRC 323
            K  ++T  PD  DD+A C+VC  GDS E DAIVICELCN A HQ+CY IE +P  E+ W C+ C
Sbjct:  136 KKAIVTAAPDAEDDVA-CSVCFEGDSTEGDAIVICELCNTAVHQTCYRIEYLP--EDDWYCHPC 196          
BLAST of mRNA_P-wetherbeei_contig18154.1.1 vs. uniprot
Match: A0A8C4R743_EPTBU (Bromodomain and PHD finger containing, 1 n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R743_EPTBU)

HSP 1 Score: 70.9 bits (172), Expect = 5.090e-10
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 3
Query:  141 GVLMTINPDDDLAYCAVCDNGDSLETDAIVICELCNVATHQSCYGIEVVPPGEEPWLCNRCRAGVSQ 341
            G   +   DDD A C +C++G+   ++AI+ C++CN+A HQ CYG+  +P G  PWLC RC    S+
Sbjct:  298 GATASAPQDDDDAVCCICNDGECQSSNAILFCDMCNLAVHQECYGVPYIPEG--PWLCRRCLQSPSR 362          
BLAST of mRNA_P-wetherbeei_contig18154.1.1 vs. uniprot
Match: A0A1E3Q7B0_LIPST (Uncharacterized protein n=1 Tax=Lipomyces starkeyi NRRL Y-11557 TaxID=675824 RepID=A0A1E3Q7B0_LIPST)

HSP 1 Score: 69.7 bits (169), Expect = 1.070e-9
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 3
Query:  135 QKGVLMTINPDDDLAYCAVCDNGDSLETDAIVICELCNVATHQSCYGIEVVPPGEEPWLCNRCRA 329
            +  V+  +N +DD + CA+CD+G+   ++AIV C+ CNVA HQ CYG+  +P G+  WLC RC++
Sbjct:  259 KSAVIDALNENDD-SKCAICDDGECENSNAIVFCDGCNVAVHQDCYGVPFIPEGQ--WLCRRCQS 320          
BLAST of mRNA_P-wetherbeei_contig18154.1.1 vs. uniprot
Match: A0A3S3P4G1_9ACAR (Peregrin-like isoform X10 n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P4G1_9ACAR)

HSP 1 Score: 69.3 bits (168), Expect = 1.670e-9
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 3
Query:  108 YFLRKPYGEQKGVLMTINPDDDLAYCAVCDNGDSLETDAIVICELCNVATHQSCYGIEVVPPGEEPWLCNRCRAGVSQ 341
            YFL +  G+  G  +     D+ A C +C++G+   T+AI+ C++CN+A HQ CYG+  +P G+  WLC RC    S+
Sbjct:  261 YFLSQNSGKDMGPAI-----DEDAVCCICNDGECQNTNAILFCDMCNLAVHQECYGVPYIPEGQ--WLCRRCLQSPSR 331          
BLAST of mRNA_P-wetherbeei_contig18154.1.1 vs. uniprot
Match: A0A2P6VAH8_9CHLO (Peregrin isoform X2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VAH8_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 1.770e-9
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 3
Query:  144 VLMTINPDDDLAYCAVCDNGDSLETDAIVICELCNVATHQSCYGIEVVPPGEEPWLCNRCRA--------GVSQGKQHP 356
            VL   +PD + A+CAVC +G S   + IV CE C+VA HQ+CYGI VVP GE  WLC  C+         G+ QG+  P
Sbjct:  795 VLAQRDPDQE-AFCAVCGDGTSEPPNQIVFCERCDVAVHQNCYGIAVVPEGE--WLCEPCKQYEEVMKAQGMPQGELRP 870          
BLAST of mRNA_P-wetherbeei_contig18154.1.1 vs. uniprot
Match: A0A443SUF3_9ACAR (Peregrin-like isoform X11 n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SUF3_9ACAR)

HSP 1 Score: 68.9 bits (167), Expect = 2.230e-9
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 3
Query:  108 YFLRKPYGEQKGVLMTINPDDDLAYCAVCDNGDSLETDAIVICELCNVATHQSCYGIEVVPPGEEPWLCNRCRAGVSQ 341
            YFL +  G+  G  +     D+ A C +C++G+   T+AI+ C++CN+A HQ CYG+  +P G+  WLC RC    S+
Sbjct:  269 YFLSQNSGKDVGPAI-----DEDAVCCICNDGECQNTNAILFCDMCNLAVHQECYGVPYIPEGQ--WLCRRCLQSPSR 339          
BLAST of mRNA_P-wetherbeei_contig18154.1.1 vs. uniprot
Match: U6GYK4_EIMAC (PHD-finger domain-containing protein, putative n=1 Tax=Eimeria acervulina TaxID=5801 RepID=U6GYK4_EIMAC)

HSP 1 Score: 68.2 bits (165), Expect = 2.460e-9
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 3
Query:   93 RRVGKYFLRKPYGEQKGVLMTINPD--DDLAYCAVCDNGDSLETDAIVICELCNVATHQSCYGIEVVPPGEEPWLCNRCR 326
            RR+ +  L++  GEQ+ + + ++ D  DD   C VC N D+   DAIV+C+ C+ A HQSCY I  +P GE  W C  CR
Sbjct:   30 RRLSRVALKQRLGEQRKLWIHLSEDLQDDGIRCDVCANSDTSADDAIVLCDGCDAAVHQSCYNIGALPEGE--WFCEYCR 107          
BLAST of mRNA_P-wetherbeei_contig18154.1.1 vs. uniprot
Match: A0A7S0LKH8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LKH8_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 2.630e-9
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 3
Query:  168 DDLAYCAVCDNGDSLETDAIVICELCNVATHQSCYGIEV--VPPGEEPWLCNRCRAGVSQGKQHPEEE 365
            +DLA CAVC+ GD  + +AI+ C+ C++A HQ CYG     +P G+ PW C+ CR    +G +  E+E
Sbjct:   67 EDLARCAVCNEGDWEDDNAIIFCDSCDLAVHQVCYGAGARNIPKGDVPWYCDVCRHTGKRGDRRCEQE 134          
BLAST of mRNA_P-wetherbeei_contig18154.1.1 vs. uniprot
Match: A0A1Y1YDQ9_9FUNG (PHD-type domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YDQ9_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 2.780e-9
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 3
Query:  165 DDDLAYCAVCDNGDSLETDAIVICELCNVATHQSCYGIEVVPPGEEPWLCNRC 323
            + D + C +C   D  + +AIV C+ C++  HQ CYGI+VVPPG + W C RC
Sbjct:   21 ESDESSCVICGGEDGSKKNAIVFCDGCDIPVHQKCYGIDVVPPGNQKWFCQRC 73          
BLAST of mRNA_P-wetherbeei_contig18154.1.1 vs. uniprot
Match: F4NXU9_BATDJ (PHD-type domain-containing protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NXU9_BATDJ)

HSP 1 Score: 67.8 bits (164), Expect = 4.950e-9
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 3
Query:  180 YCAVCDNGDSLETDAIVIC--ELCNVATHQSCYGIEVVPPGEEPWLCNRCRAGV 335
            +CA+C    S + + IV+C  E C+V  HQ CYGI+VVPPG+E W C+RC  GV
Sbjct:  135 FCAICGRAYSPKANCIVLCDGENCDVPVHQKCYGIDVVPPGDEKWFCHRCADGV 188          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18154.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3X7U1_GLOUD1.980e-1056.25PHD-type domain-containing protein n=1 Tax=Globisp... [more]
A0A8C4R743_EPTBU5.090e-1041.79Bromodomain and PHD finger containing, 1 n=2 Tax=E... [more]
A0A1E3Q7B0_LIPST1.070e-944.62Uncharacterized protein n=1 Tax=Lipomyces starkeyi... [more]
A0A3S3P4G1_9ACAR1.670e-938.46Peregrin-like isoform X10 n=1 Tax=Dinothrombium ti... [more]
A0A2P6VAH8_9CHLO1.770e-946.84Peregrin isoform X2 n=1 Tax=Micractinium conductri... [more]
A0A443SUF3_9ACAR2.230e-938.46Peregrin-like isoform X11 n=1 Tax=Leptotrombidium ... [more]
U6GYK4_EIMAC2.460e-942.50PHD-finger domain-containing protein, putative n=1... [more]
A0A7S0LKH8_9EUKA2.630e-942.65Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A1Y1YDQ9_9FUNG2.780e-945.28PHD-type domain-containing protein n=1 Tax=Basidio... [more]
F4NXU9_BATDJ4.950e-951.85PHD-type domain-containing protein n=2 Tax=Batrach... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18154contigP-wetherbeei_contig18154:322..1375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog109871.XP_006677665.1
PFAMsPHD_2,zf-HC5HC2H_2
Model size865
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.58e-11
EggNOG OGsCOG5141@1|root,KOG0956@2759|Eukaryota,3AREV@33154|Opisthokonta,3PFJF@4751|Fungi
DescriptionPHD-finger
Cds size288
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.5478427-UTR-P-wetherbeei_contig18154:321..7491683186137.5478427-UTR-P-wetherbeei_contig18154:321..749Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18154 322..749 -
1683186137.577572-UTR-P-wetherbeei_contig18154:1226..13751683186137.577572-UTR-P-wetherbeei_contig18154:1226..1375Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18154 1227..1375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186137.5575852-CDS-P-wetherbeei_contig18154:749..9231683186137.5575852-CDS-P-wetherbeei_contig18154:749..923Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18154 750..923 -
1683186137.567281-CDS-P-wetherbeei_contig18154:1112..12261683186137.567281-CDS-P-wetherbeei_contig18154:1112..1226Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18154 1113..1226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18154.1.1prot_P-wetherbeei_contig18154.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18154 750..1226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18154.1.1

>prot_P-wetherbeei_contig18154.1.1 ID=prot_P-wetherbeei_contig18154.1.1|Name=mRNA_P-wetherbeei_contig18154.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
MTINPDDDLAYCAVCDNGDSLETDAIVICELCNVATHQSCYGIEVVPPGE
EPWLCNRCRAGVSQGKQHPEEERFDPRILTVSQFHGSFHGSQVTY*
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mRNA from alignment at P-wetherbeei_contig18154:322..1375-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18154.1.1 ID=mRNA_P-wetherbeei_contig18154.1.1|Name=mRNA_P-wetherbeei_contig18154.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1054bp|location=Sequence derived from alignment at P-wetherbeei_contig18154:322..1375- (Phaeothamnion wetherbeei SAG_119_79)
GTGATACCTCCCCGTTGCCCGTTTCTCGATCTCGATTTCGCGCCTCCGCA CAAACGCTTTCGGACGATCCAAAGGTCAGCTTTGTCGCCAGGCGCCGGGT GGGCAAGTACTTTCTTCGGAAGCCATACGGAGAACAGAAAGGGGTTCTCA TGACAATCAATCCAGACGATGACCTGGCGTATTGCGCCGTATGTGATAAC GGCGACTCGCTTGAAACGGACGCTATCGTTATCTGCGAGCTCTGCAACGT CGCTACTCACCAGGTAGGGAGTAGTGTCGACCGGCGAATGGCGCACGATA GCATCTGCGTTCAAACGTTATAACTTGTACCCGTCTCGCGCCAGTCTCTC GAATCCCGTTCGCACGTAACTGCCAATCAAATGCTTTTTCTCACCACCAC CAGCTCCAAATTTCCCGTTCATATTCCTCCTTTCCACAATTGTGAAACAC AGTCGTGCTATGGAATCGAAGTCGTCCCGCCCGGCGAAGAGCCGTGGTTG TGCAACCGATGCCGCGCCGGCGTCTCACAAGGTAAGCAACACCCTGAAGA GGAGAGGTTTGATCCAAGGATACTCACGGTTTCTCAATTTCACGGTTCCT TTCACGGTTCACAGGTCACATACTAGTTATTGGGACCTGGGCTTGTAGGA AAATTGGAGAAAAGAAAGGAACTGGACCTGGATCTGTGAAGGCCGTGGAC ACCCGAGTTCCGCTTCTTCATCTTGGGCACGTAGAAACGTCATTGTCCCT CCTGCTAAAACTGTTTTGGGGTAAAAATATGAATGGTAATTGCCTAATTA TTGGTCAAATCCGAGTTCTTTGAACAATTTCAAGGACCCGTGGCCTTTGA ACCGTAAACCGGAGGAAGAAAACCCCGGGATCTGGACCTGGACCCGTGAA AAAAGAAAAGATCTTGACCTGGAACCAGGGAAAAGTAGCGAACCGTGAAT ATCCTTGGTTTGATCGCCTCGCCGAAGCAGTAGCTGCCATGCGTCTTCGA CGCTTCAGCCGGCTCATTCCCCTCAAGGCACTCCCTGGGGCCTGTTTGAT CGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18154:322..1375-

>mRNA_P-wetherbeei_contig18154.1.1 ID=mRNA_P-wetherbeei_contig18154.1.1|Name=mRNA_P-wetherbeei_contig18154.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig18154:322..1375- (Phaeothamnion wetherbeei SAG_119_79)
ATGACAATCAATCCAGACGATGACCTGGCGTATTGCGCCGTATGTGATAA
CGGCGACTCGCTTGAAACGGACGCTATCGTTATCTGCGAGCTCTGCAACG
TCGCTACTCACCAGTCGTGCTATGGAATCGAAGTCGTCCCGCCCGGCGAA
GAGCCGTGGTTGTGCAACCGATGCCGCGCCGGCGTCTCACAAGGTAAGCA
ACACCCTGAAGAGGAGAGGTTTGATCCAAGGATACTCACGGTTTCTCAAT
TTCACGGTTCCTTTCACGGTTCACAGGTCACATACTAG
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