mRNA_P-wetherbeei_contig18150.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: A0A7W5TGP2_9HYPH (2'-5' RNA ligase n=4 Tax=Rhizobium TaxID=379 RepID=A0A7W5TGP2_9HYPH) HSP 1 Score: 80.9 bits (198), Expect = 2.640e-16 Identity = 48/103 (46.60%), Postives = 61/103 (59.22%), Query Frame = 1
Query: 100 PHMTMAQIEVDALDRAAGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTLGR---LRDAG 399
PH+++A + + AL + + GM + S+GLFPG PVLF PV SA LLALHR H A+ D+ AA +YLPGNWVPHVTLG L +AG
Sbjct: 41 PHISLAVYDGLDPEPLIKALDQFSDGMRSPVVRLSSLGLFPGSAPVLFAAPVVSAELLALHRDFHTAI---DSAGAACWSYYLPGNWVPHVTLGEQLTLEEAG 140
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: A0A6G2JP02_9BACT (2'-5' RNA ligase family protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6G2JP02_9BACT) HSP 1 Score: 79.0 bits (193), Expect = 1.430e-15 Identity = 50/132 (37.88%), Postives = 70/132 (53.03%), Query Frame = 1
Query: 1 AIVMTFDTASDTRIRRLWKAFEDRALIMPNVG----RPHMTMAQIEVDALDRAA--GALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTL 378
AI + +D ASD +R +W AL P++ RPH+++A + D D L E A + S+G FPG++ V+FL PV + LLA+H R H+ K D G G+YLPGNWVPH T+
Sbjct: 4 AIELFYDEASDRTVREIWDGL-GTALGQPSLSELGARPHVSLA-VYGDGYDTNGFPERLLEFARSIDPFDFTLSSLGTFPGQEGVVFLAPVVTRRLLAVHARFHEVFSKHDHV---GMGYYLPGNWVPHCTV 130
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: A0A6L7U490_9CHLR (2'-5' RNA ligase family protein n=3 Tax=unclassified Caldilineaceae TaxID=1919254 RepID=A0A6L7U490_9CHLR) HSP 1 Score: 79.3 bits (194), Expect = 1.540e-15 Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 1
Query: 1 AIVMTFDTASDTRIRRLWKAFEDR---ALIMPNVGRPHMTMAQIEVDALDRA-AGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTL 378
A+ + FD SD +R +W D + ++ N GRPH+++A D R+ L + + ++ S+G FP E+ V+FL PV ++ LLA+H R A + +A HYLPGNWVPHVT+
Sbjct: 22 AVELYFDPDSDLAVREIWSGIADAFGLSTMLTNGGRPHVSLAVYSDDFDHRSFLQELPAFSKSLAPLKVQLGSVGTFPTEEGVIFLAPVVTSELLAVHERFRIAFSGFEGCASA---HYLPGNWVPHVTV 148
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: UPI00178A0663 (2'-5' RNA ligase family protein n=1 Tax=Rhizobium viscosum TaxID=1673 RepID=UPI00178A0663) HSP 1 Score: 74.7 bits (182), Expect = 6.160e-14 Identity = 47/107 (43.93%), Postives = 59/107 (55.14%), Query Frame = 1
Query: 100 PHMTMAQIEVDALDRAAGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTLGRLRDAGRLGEAMT 420
PH+++A + + A AL ++ + + SIGLFPG VLF PV S LLALHR H A A A +A P HYLPGNWVPHVTLG G A++
Sbjct: 41 PHISLAVYDGLDPEPIAKALDRFSADISTPSIKLSSIGLFPGPASVLFAAPVVSEELLALHRDFHAAA--ATAGVACWP-HYLPGNWVPHVTLGEQLSPEEAGAAIS 144
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: A0A0G3IQQ1_9MYCO (Uncharacterized protein n=1 Tax=Mycobacterium sp. EPa45 TaxID=1545728 RepID=A0A0G3IQQ1_9MYCO) HSP 1 Score: 72.4 bits (176), Expect = 4.360e-13 Identity = 50/146 (34.25%), Postives = 74/146 (50.68%), Query Frame = 1
Query: 1 AIVMTFDTASDTRIRRLWKAFEDRAL-----IMPNVGRPHMTMAQIE--VDALDRAAGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTLGRLRDAGRLGEAM 417
+I + D +DT +RRLW A D L + + RPH+T+ E V A+D + G LA G+ +A + +F G + L VAS LLA+H +++D + L A H +PG W PHVTLGR ++ EA+
Sbjct: 4 SIELLLDDRADTAVRRLWHALADAGLPSQLRVSSDTNRPHITVIAAEQIVAAVDESLGELA----GLFPLDVALGAPVIFGGGRLTLARLVVASDKLLAVHEKIYDLCLPFVSNLFA---HTMPGQWTPHVTLGRRYTPAQIAEAL 142
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: A0A858RQ06_9BACT (2'-5' RNA ligase family protein n=1 Tax=Luteolibacter luteus TaxID=2728835 RepID=A0A858RQ06_9BACT) HSP 1 Score: 72.4 bits (176), Expect = 4.630e-13 Identity = 45/146 (30.82%), Postives = 69/146 (47.26%), Query Frame = 1
Query: 1 AIVMTFDTASDTRIRRLWKAFEDRAL--IMPNVGRPHMTMAQIEVDALDRAAGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTLGRLRDAGRLGEAMTIANE 432
A+ + D A++ R+RR+W+ + + + RPH+++A + D L A G + F SIG+FP EQPVLFL P + LL LH D+ + +Y P W+PH TL + EA++I E
Sbjct: 4 AVELFLDPATEQRVRRIWERLAGIGISYLHGSGSRPHVSLAVCDSIDTDATIELLNRFAEDTSGFPITFSSIGIFPAEQPVLFLAPKVTIPLLELHASFMDSFEPMATRIWP---NYAPSEWIPHCTLAVACPHECVEEALSICRE 146
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: J2AXT3_9HYPH (2'-5' RNA ligase n=4 Tax=Rhizobium TaxID=379 RepID=J2AXT3_9HYPH) HSP 1 Score: 71.2 bits (173), Expect = 1.300e-12 Identity = 45/107 (42.06%), Postives = 55/107 (51.40%), Query Frame = 1
Query: 100 PHMTMAQIEVDALDRAAGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTLGRLRDAGRLGEAMT 420
PH+++A + + AL ++ M + SIGLFPG VLF PV S LL LHR H A A A A P HYLP NWVPHVTLG G A++
Sbjct: 41 PHISLAVYDGLDPEPLTNALDRFSANMSAPSVKLSSIGLFPGPASVLFAAPVVSEELLILHRDFHAAAASAGA--ACWP-HYLPENWVPHVTLGEQLSPEEAGAAIS 144
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: UPI00141E2DED (2'-5' RNA ligase family protein n=1 Tax=Mycobacterium sp. DL592 TaxID=2675524 RepID=UPI00141E2DED) HSP 1 Score: 70.9 bits (172), Expect = 1.690e-12 Identity = 59/148 (39.86%), Postives = 75/148 (50.68%), Query Frame = 1
Query: 1 AIVMTFDTASDTRIRRLWKAFEDRAL-----IMPNVGRPHMTM--AQIEVDALDRAAGALAE--VASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGP-GHYLPGNWVPHVTLGRLRDAGRLGEA 414
+I +T D SD IR+LW+A +D L + RPH+T+ AQ +D A ALA+ + G L F G + VL VASA LL LHR V+D + LA P GH PG W PHVTLGR A +LG+A
Sbjct: 4 SIELTLDAHSDAAIRQLWQALDDAGLPSQTRVTSATNRPHITLLAAQRISPDVDAAWTALAQRIPLPVLVGAPLVFG------GGRLVLARLIVASAALLELHREVYD---RCLPHLAGEPYGHTAPGQWTPHVTLGRRLTAEQLGDA 142
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: A0A563EUG6_9PSEU (2'-5' RNA ligase family protein n=2 Tax=Lentzea tibetensis TaxID=2591470 RepID=A0A563EUG6_9PSEU) HSP 1 Score: 64.7 bits (156), Expect = 3.550e-10 Identity = 45/126 (35.71%), Postives = 65/126 (51.59%), Query Frame = 1
Query: 1 AIVMTFDTASDTRIRRLWKAFEDRALIMPNVGRPHMTMAQIEVDALDRAAGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTL 378
A+V FD +D ++R LW+ L + + PH+T A + +A L E S + L ++G+F + VL L+ V A LLA+H +HD L +A +YLPGNWVPHVTL
Sbjct: 4 ALVAFFDDEADAKVRGLWQQ-----LGVKHEYPPHLTYA-VAGTIGPKARAELREDLSRLWVPDLWLHTLGVFSATENVLHLSAVVDAELLAVHSAIHDVLAGKVRNPSA---YYLPGNWVPHVTL 120
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Match: UPI00143CBB4D (2'-5' RNA ligase family protein n=1 Tax=Falsiroseomonas frigidaquae TaxID=487318 RepID=UPI00143CBB4D) HSP 1 Score: 63.9 bits (154), Expect = 6.710e-10 Identity = 47/127 (37.01%), Postives = 65/127 (51.18%), Query Frame = 1
Query: 1 AIVMTFDTASDTRIRRLWKAFEDRALIMPNVGRP-HMTMAQIEVDALDRAAGALAEVASGMHGTRLAFDSIGLFPGEQPVLFLNPVASAGLLALHRRVHDALRKADATLAAGPGHYLPGNWVPHVTL 378
A+ + D + + RL A + P +G P H+T+ + E + A A+A A+ + LAF G+FPG +LFL PV ++ LLALH + DAL ADA H PG WVPH TL
Sbjct: 4 AVTLRMDARGEAVLARLGAALP--GWVTPQLGYPPHITLLRGEDEVEPDFARAMA--AAQVGAVDLAFAGFGIFPGPPAILFLAPVVTSALLALHAALADAL-PADALHP----HVRPGAWVPHATL 121 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18150.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig18150.1.1 >prot_P-wetherbeei_contig18150.1.1 ID=prot_P-wetherbeei_contig18150.1.1|Name=mRNA_P-wetherbeei_contig18150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp MTFDTASDTRIRRLWKAFEDRALIMPNVGRPHMTMAQIEVDALDRAAGALback to top mRNA from alignment at P-wetherbeei_contig18150:115..555+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig18150.1.1 ID=mRNA_P-wetherbeei_contig18150.1.1|Name=mRNA_P-wetherbeei_contig18150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig18150:115..555+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig18150:115..555+ >mRNA_P-wetherbeei_contig18150.1.1 ID=mRNA_P-wetherbeei_contig18150.1.1|Name=mRNA_P-wetherbeei_contig18150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig18150:115..555+ (Phaeothamnion wetherbeei SAG_119_79)back to top |