mRNA_P-wetherbeei_contig18131.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18131.1.1
Unique NamemRNA_P-wetherbeei_contig18131.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18131.1.1 vs. uniprot
Match: A0A835Z5K4_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5K4_9STRA)

HSP 1 Score: 290 bits (741), Expect = 7.560e-91
Identity = 158/257 (61.48%), Postives = 181/257 (70.43%), Query Frame = 1
Query:  193 ETFAELYEGRLPDWLIARLSQLCFERPTLVQRRALEAILPGSDAVIHAQTGSGKTLAFLLPLLAAMDPSRAAVQGLVVVPTRELGLQVAAVAKRLAAATGPATGGRLQVMSVLEGSKNKRQRAWAKAEPPHVIIGNPGNFCALVSSGAIRVNALRFVVVDEVDACMLNPATKANLHDLLSRHLSPTFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLPRQTVFASATVPQHRHFLKQCVRNQWT 963
            +T+ ELY  RLP WLI RL +L F +PTLVQ+RAL+ IL G DAV+HAQTGSGKTLAFL+PL A +DPSRA+VQGLVVVPTRELGLQVAAVAKRLAAATG ATGGR+ VMSVLEGS N+RQRAWA AEPPHV+IGNP    ALV+ GA+R N +R+VVVDEVDAC+ +   +A L  LL+RHLSPTFA                                       R   RQTVFASATVPQH HF++QCV  QWT
Sbjct:   56 DTYRELYGERLPQWLIERLEELGFAKPTLVQQRALDTILAGHDAVLHAQTGSGKTLAFLVPLFACIDPSRASVQGLVVVPTRELGLQVAAVAKRLAAATGAATGGRVMVMSVLEGSNNRRQRAWAWAEPPHVVIGNPETLSALVAGGAVRCNGVRYVVVDEVDACLRSGDARAALTALLARHLSPTFAQEEEAEVPQLPGGVAVTGAAAAADGARR-----------RVRARQTVFASATVPQHNHFMRQCVAQQWT 301          
BLAST of mRNA_P-wetherbeei_contig18131.1.1 vs. uniprot
Match: D8LSP0_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSP0_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 1.830e-89
Identity = 157/261 (60.15%), Postives = 184/261 (70.50%), Query Frame = 1
Query:  190 SETFAELYEGRLPDWLIARLSQLCFERPTLVQRRALEAILPGS--DAVIHAQTGSGKTLAFLLPLLAAMDPSRAAVQGLVVVPTRELGLQVAAVAKRLAAATGPATGGRLQVMSVLEGSKNKRQRAWAKAEPPHVIIGNPGNFCALVSSGAIRVNALRFVVVDEVDACMLNPATKANLHDLLSRHLSPTFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRL-PRQTVFASATVPQHRHFLKQCVRNQWT 963
            + TF EL+ GRLPDWL+ RL QL F  PTLVQR+ALE IL     DAV+HAQTGSGKTLAFLLPLL  +DPSRAAVQGLVVVPTRELGLQVA VAKRLAA T      ++QVMSVLEGS NKRQRAWA A+PPH++IGNP +   LV++GA+RVNA+ +VVVDEVDAC+L+  T+A+LH+LL+R LSPT AD                                      R+L  RQTVFASATVPQH HF++QCV+ QWT
Sbjct:    3 ARTFRELFRGRLPDWLLNRLEQLGFATPTLVQRQALEVILGEEKHDAVLHAQTGSGKTLAFLLPLLGRVDPSRAAVQGLVVVPTRELGLQVAGVAKRLAAGTSSGRDSKIQVMSVLEGSSNKRQRAWAWADPPHIVIGNPESLTRLVTTGAVRVNAVSYVVVDEVDACLLSEGTRASLHELLARSLSPTHADEDEGEDEEGAARLAEVGAGRVTGAAAPVN---------RKLRDRQTVFASATVPQHNHFIRQCVQKQWT 254          
BLAST of mRNA_P-wetherbeei_contig18131.1.1 vs. uniprot
Match: A0A6H5KF38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF38_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 3.090e-88
Identity = 163/271 (60.15%), Postives = 189/271 (69.74%), Query Frame = 1
Query:  160 APASVGAVEGSETFAELYEGRLPDWLIARLSQLCFERPTLVQRRALEAILPGS--DAVIHAQTGSGKTLAFLLPLLAAMDPSRAAVQGLVVVPTRELGLQVAAVAKRLAAATGPATGGRLQVMSVLEGSKNKRQRAWAKAEPPHVIIGNPGNFCALVSSGAIRVNALRFVVVDEVDACMLNPATKANLHDLLSRHLSPTFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRL-PRQTVFASATVPQHRHFLKQCVRNQWT 963
            A A  G V G  TF EL+ GRLPDWL+ RL QL F  PTLVQR+ALE IL     DAV+HAQTGSGKTLAFLLPLLA +DPSRAAVQGLVVVPTRELGLQVA VAKRLAA T      ++QVMSVLEGS NKRQRAWA A+PPH++IGNP +   LV++GA+RVNA+ +VVVDEVDAC+L+  T+A+LH+LL+R LSPT AD                                      R+L  RQTVFASATVPQH HF++QCV+ QWT
Sbjct:  162 AAADPGPVNGG-TFRELFRGRLPDWLLTRLEQLGFATPTLVQRQALEVILGEGKHDAVLHAQTGSGKTLAFLLPLLARVDPSRAAVQGLVVVPTRELGLQVAGVAKRLAAGTSSGRESKIQVMSVLEGSSNKRQRAWAWADPPHIVIGNPESLTRLVTTGAVRVNAVSYVVVDEVDACLLSEGTRASLHELLARSLSPTHADEDEGEDEEEAVRLAEVGAGRVTGAAAPVN---------RKLRDRQTVFASATVPQHNHFIRQCVQKQWT 422          
BLAST of mRNA_P-wetherbeei_contig18131.1.1 vs. uniprot
Match: A0A7S4MVY5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MVY5_9STRA)

HSP 1 Score: 245 bits (626), Expect = 3.810e-73
Identity = 138/273 (50.55%), Postives = 175/273 (64.10%), Query Frame = 1
Query:  193 ETFAELYEG-----RLPDWLIARLSQLCFERPTLVQRRALEAILPGSDAVIHAQTGSGKTLAFLLPLLAAMDPSRAAVQGLVVVPTRELGLQVAAVAKRLAAATGPATG--GRLQVMSVLEGSKNKRQRAWAKAEPPHVIIGNPGNFCALVSSGAIRVNALRFVVVDEVDACMLNP---------ATKANLHDLLSRHLSPTFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLPRQTVFASATVPQHRHFLKQCVRNQWT 963
            E+F ELY        LP WL  R S+  +  PTLVQRR+L+AIL G D VI AQTGSGKTL+FLLPLL+ +D SR+A+Q ++VVPTRELGLQ++ VA+RLAAA+GP T   G++ VM +L+GS+NKRQRAWA AEPPHV++G P     +VS G IR NA++FVVVDEVDAC+LN          A+   LH+LLSR+LSPT+ +                                          RQTVF+SAT+PQH HF++QCV+NQWT
Sbjct:   89 ESFTELYTASSSGEELPLWLTERCSECGWPTPTLVQRRSLDAILTGMDVVIQAQTGSGKTLSFLLPLLSKIDASRSAIQAVIVVPTRELGLQISRVARRLAAASGPDTDAKGKIMVMPILQGSRNKRQRAWAWAEPPHVVVGTPDELTKMVSKGGIRYNAVKFVVVDEVDACLLNNGGSIGMSNLASAGPLHELLSRYLSPTYDEVDVLDGDSASLVSSSAADLAGSSKTVSHGTD-----------RQTVFSSATIPQHNHFMRQCVQNQWT 350          
BLAST of mRNA_P-wetherbeei_contig18131.1.1 vs. uniprot
Match: A0A7S2YSE4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSE4_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.380e-69
Identity = 134/282 (47.52%), Postives = 176/282 (62.41%), Query Frame = 1
Query:  190 SETFAELYEGRLPDWLIARLSQLCFERPTLVQRRALEAILPGS-DAVIHAQTGSGKTLAFLLPLLAAMDPSRAAVQGLVVVPTRELGLQVAAVAKRLAAAT---------GPATGG------RLQVMSVLEGSKNKRQRAWAKAEPPHVIIGNPGNFCALVSSGAI-RVNALRFVVVDEVDACMLNPA-------TKANLHDLLSRHLSPTFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLPRQTVFASATVPQHRHFLKQCVRNQWT 963
            ++TF+ELYE  +P WL+ R  +  +E PT +Q +AL AIL    DA++ A+TGSGKTL++LLP +AA+D SR+AVQ L+VVPTRELGLQV  VAKRLAAA+          P  G       ++ VM+VL+GS+N+RQRAWA AEPPH++IG P   C +V  G I R N++++VVVDEVDAC+LN A       + + LH+LLS++LSPTF D                                          RQT+FASAT+PQHRHFLKQC++NQWT
Sbjct:  128 NQTFSELYESFIPSWLLKRCEECGWESPTRIQEKALNAILRDKKDAIVQAETGSGKTLSYLLPAMAAVDSSRSAVQVLIVVPTRELGLQVGRVAKRLAAASYNQDPDIGQDPDVGNAGKPQKKIMVMNVLQGSQNRRQRAWAWAEPPHIVIGTPQELCDMVRYGGIKRYNSVKYVVVDEVDACLLNNAGSMTAKLSSSTLHELLSKYLSPTFDDGSSANEENGIREVAKSGTQQIQSRPLSET-------------RQTIFASATIPQHRHFLKQCIQNQWT 396          
BLAST of mRNA_P-wetherbeei_contig18131.1.1 vs. uniprot
Match: B7FRY7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FRY7_PHATC)

HSP 1 Score: 234 bits (596), Expect = 1.860e-68
Identity = 135/272 (49.63%), Postives = 172/272 (63.24%), Query Frame = 1
Query:  190 SETFAELYEGRLPDWLIARLSQLCFERPTLVQRRALEAIL-PGSDAVIHAQTGSGKTLAFLLPLLAAMDPSRAAVQGLVVVPTRELGLQVAAVAKRLAAATGP-----ATGGRLQVMSVLEGSKNKRQRAWAKAEPPHVIIGNPGNFCALVSSGAI-RVNALRFVVVDEVDACMLNPA-------TKANLHDLLSRHLSPTFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLPRQTVFASATVPQHRHFLKQCVRNQWT 963
            +E+F   Y   LP WLI + ++  +  P+ +Q +AL+AIL    DAV+ A+TGSGKTLA+LLP LA++D SRAAVQ L+VVPTRELGLQVA VAKRLAAA+         GGR+ VMSVL+GS+N+RQRAWA AEPPH++IG P   C +V  G I R N+++F+VVDEVDAC+LN A         + LH+LLS++LSPT+ D                                          RQT+FASAT+PQHRHFLKQC +NQWT
Sbjct:  131 AESFESRYAAVLPSWLIQKCAECGWTHPSRIQEKALDAILFERRDAVVQAETGSGKTLAYLLPALASIDGSRAAVQALIVVPTRELGLQVARVAKRLAAASTQNDNVTLNGGRIMVMSVLQGSQNRRQRAWAWAEPPHLVIGTPQELCDMVKLGGIKRYNSVKFIVVDEVDACLLNNAGSLTSNLASSTLHELLSKYLSPTYDDGSANEADDNVLRSVKTSTKTATSTRPLSSQ------------RQTIFASATIPQHRHFLKQCAQNQWT 390          
BLAST of mRNA_P-wetherbeei_contig18131.1.1 vs. uniprot
Match: A0A7S4J1Z4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J1Z4_9STRA)

HSP 1 Score: 218 bits (554), Expect = 4.350e-65
Identity = 118/203 (58.13%), Postives = 149/203 (73.40%), Query Frame = 1
Query:  193 ETFAELYEG-----RLPDWLIARLSQLCFERPTLVQRRALEAILPGSDAVIHAQTGSGKTLAFLLPLLAAMDPSRAAVQGLVVVPTRELGLQVAAVAKRLAAATGPATG--GRLQVMSVLEGSKNKRQRAWAKAEPPHVIIGNPGNFCALVSSGAIRVNALRFVVVDEVDACMLNP---------ATKANLHDLLSRHLSPTF 753
            E+F ELY        LP WL  R S+  +  PTLVQRR+L+AIL G D VI AQTGSGKTL+FLLPLL+ +D SR+A+Q ++VVPTRELGLQ++ VA+RLAAA+GP T   G++ VM +L+GS+NKRQRAWA AEPPHV++G P     +VS G IR NA++FVVVDEVDAC+LN          A+   LH+LLSR+LSPT+
Sbjct:   89 ESFTELYTASSSGEELPLWLTERCSECGWPTPTLVQRRSLDAILTGMDVVIQAQTGSGKTLSFLLPLLSKIDASRSAIQAVIVVPTRELGLQISRVARRLAAASGPDTDAKGKIMVMPILQGSRNKRQRAWAWAEPPHVVVGTPDELTKMVSKGGIRYNAVKFVVVDEVDACLLNNGGSIGMSNLASAGPLHELLSRYLSPTY 291          
BLAST of mRNA_P-wetherbeei_contig18131.1.1 vs. uniprot
Match: W7TME3_9STRA (RNA helicase, DEAD-box type n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TME3_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.930e-64
Identity = 129/302 (42.72%), Postives = 172/302 (56.95%), Query Frame = 1
Query:  190 SETFAELYEGRLPDWLIARLSQLCFERPTLVQRRALEAILPGSDAVIHAQTGSGKTLAFLLPLLAAMDPSRAAVQGLVVVPTRELGLQVAAVAKRLAA-------------------------------------ATGPATGGRLQVMSVLEGSKNKRQRAWAKAEPPHVIIGNPGNFCALVSSGAIRVNALRFVVVDEVDACMLNPATKANLHDLLSRHLSPTF--ADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLP-----RQTVFASATVPQHRHFLKQCVRNQWT 963
            +ETF++LY  RLP WL+AR+  L + RPT VQ+ AL AIL G D V+H+QTG+GKTLAF+LPLLA +D ++ AVQ LVVVP+RELGLQVA+VAK+LA+                                     A+      ++ +MS+LEGSKN+RQ+AW  AEPPHV+IGNP +   LV  G IR + ++ VVVDEVDAC+ +P T   L  LL ++LSP+F  A+                                      +  P     RQT+F SA++PQH+HF+KQCV+ QWT
Sbjct:  115 AETFSQLYGDRLPSWLLARVESLGYTRPTAVQKEALGAILEGEDVVVHSQTGTGKTLAFMLPLLAGIDVNKNAVQALVVVPSRELGLQVASVAKQLASGHMYYRGEDGQEEGRDAENEDPERREEGVGSESMTAGASNVRAAKKILIMSLLEGSKNRRQKAWVLAEPPHVVIGNPRSLAQLVERGGIRYHQVKMVVVDEVDACLTSPETGRELQGLLGKYLSPSFLTAELEEEATATGGSSKDEEGPLLPQGAMKDGGGEKGGRVARKLAPWKLVHRQTLFVSASIPQHKHFIKQCVQQQWT 416          
BLAST of mRNA_P-wetherbeei_contig18131.1.1 vs. uniprot
Match: A0A7S3VGM2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGM2_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.240e-64
Identity = 127/274 (46.35%), Postives = 175/274 (63.87%), Query Frame = 1
Query:  190 SETFAELYEGRLPDWLIARLSQLCFERPTLVQRRALEAIL-PGSDAVIHAQTGSGKTLAFLLPLLAAMDPSRAAVQGLVVVPTRELGLQVAAVAKRLAAATGPA-TGGRLQVMSVLEGSKNKRQRAWAKAEPPHVIIGNPGNFCALVSSGAIRVNALRFVVVDEVDACMLNP-----ATKAN----------LHDLLSRHLSPTFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLPRQTVFASATVPQHRHFLKQCVRNQW 960
            +ETFAE +   +P WL +R  +  ++ PTL+Q RA++AIL  G+D +I AQTGSGKTL +LLPLL+ +DP+R+++QG++VVPTRELG+QVA VA+RLAA +  + TG ++ VMSVL+GS NKRQRAWA+++PPHV+IG P     +V    ++ +A++FVVVDEVDAC+LN      ++K++          LH+LLSR+LSPTF +                                          RQTVF SAT+PQH HFLK CV+NQW
Sbjct:   56 NETFAEHFP-TMPRWLSSRADECGWKNPTLIQHRAIDAILNDGNDVIIQAQTGSGKTLGYLLPLLSRIDPTRSSIQGIIVVPTRELGVQVARVARRLAAGSVDSETGAKIMVMSVLQGSGNKRQRAWARSDPPHVVIGTPRELGDIVKRKGMKYHAVKFVVVDEVDACLLNNQGTIVSSKSSKSLNVSGSGPLHELLSRYLSPTFEEAEDEEVIQQLSLVEGGGSRIVSHGTD----------------RQTVFVSATIPQHNHFLKSCVQNQW 312          
BLAST of mRNA_P-wetherbeei_contig18131.1.1 vs. uniprot
Match: A0A1Z5KA53_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KA53_FISSO)

HSP 1 Score: 211 bits (538), Expect = 6.130e-61
Identity = 127/275 (46.18%), Postives = 167/275 (60.73%), Query Frame = 1
Query:  169 SVGAVEGSETFAELYEGRLPDWLIARLSQLCFERPTLVQRRALEAILPGS---DAVIHAQTGSGKTLAFLLPLLAAMDPSRAAVQGLVVVPTRELGLQVAAVAKRLAAATGPATGGRLQVMSVLEGSKNKRQRAWAKAEPPHVIIGNPGNFCALVSSGAI-RVNALRFVVVDEVDACMLNPA-----TKANLHDLLSRHLSPTFADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRL-PRQTVFASATVPQHRHFLKQCVRNQWT 963
            S GA++ ++T  + Y+ +LP WL+ R   L +  PT +Q  AL+ +L      D VI A+TGSGKTL +LLP LAA+DP+R+ VQ ++VVPTRELGLQVA VAKRL AA+      ++ +MSVL+GS+N+RQRAWA AEPP V+IG P     +V  G I R N++  VVVDEVDAC+LN A       + LH+LLS+ LS TF D                                      RRL  RQT+  SAT+PQH+HF+KQCV+N+WT
Sbjct:   50 SDGALDQTDTLLQRYQYQLPSWLLQRCQDLGYIHPTRIQIAALDVLLLDEHKPDVVIQAETGSGKTLCYLLPTLAAIDPTRSTVQAILVVPTRELGLQVAKVAKRLVAASPH----KIYIMSVLQGSQNRRQRAWAWAEPPQVVIGTPEELSKMVQLGGIKRYNSIEMVVVDEVDACLLNNAGSLQLAASPLHELLSKQLSATFLDKDEVEDTMGALSSTRPK---------------------RRLHARQTILCSATIPQHKHFIKQCVQNRWT 299          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18131.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5K4_9STRA7.560e-9161.48DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
D8LSP0_ECTSI1.830e-8960.15DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KF38_9PHAE3.090e-8860.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4MVY5_9STRA3.810e-7350.55Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2YSE4_9STRA1.380e-6947.52Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
B7FRY7_PHATC1.860e-6849.63Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S4J1Z4_9STRA4.350e-6558.13Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
W7TME3_9STRA1.930e-6442.72RNA helicase, DEAD-box type n=2 Tax=Monodopsidacea... [more]
A0A7S3VGM2_9STRA2.240e-6446.35Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5KA53_FISSO6.130e-6146.18Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18131contigP-wetherbeei_contig18131:47..1375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LSP0
PFAMsDEAD,Helicase_C
Model size963
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360
Exons2
Evalue3e-90
EggNOG OGsCOG0513@1|root,KOG0327@2759|Eukaryota
Descriptionhelicase activity
Cds size963
COG categoryJKL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186136.8453803-CDS-P-wetherbeei_contig18131:46..7021683186136.8453803-CDS-P-wetherbeei_contig18131:46..702Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18131 47..702 +
1683186136.8635657-CDS-P-wetherbeei_contig18131:1068..13751683186136.8635657-CDS-P-wetherbeei_contig18131:1068..1375Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18131 1069..1375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18131.1.1prot_P-wetherbeei_contig18131.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18131 47..1375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18131.1.1

>prot_P-wetherbeei_contig18131.1.1 ID=prot_P-wetherbeei_contig18131.1.1|Name=mRNA_P-wetherbeei_contig18131.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=321bp
MPAQAFSLSSCGPGEKGGARDSSRWRGEFSRHRRRPACAAVTAEAAAAPG
VVYAPASVGAVEGSETFAELYEGRLPDWLIARLSQLCFERPTLVQRRALE
AILPGSDAVIHAQTGSGKTLAFLLPLLAAMDPSRAAVQGLVVVPTRELGL
QVAAVAKRLAAATGPATGGRLQVMSVLEGSKNKRQRAWAKAEPPHVIIGN
PGNFCALVSSGAIRVNALRFVVVDEVDACMLNPATKANLHDLLSRHLSPT
FADDDDPAAAEAAAAAAVATVVAGGAAAAASAAAAAAAALRRRLPRQTVF
ASATVPQHRHFLKQCVRNQWT
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mRNA from alignment at P-wetherbeei_contig18131:47..1375+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18131.1.1 ID=mRNA_P-wetherbeei_contig18131.1.1|Name=mRNA_P-wetherbeei_contig18131.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1329bp|location=Sequence derived from alignment at P-wetherbeei_contig18131:47..1375+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGCCCAGGCCTTCTCGCTTTCGAGCTGCGGTCCTGGAGAGAAAGG GGGAGCACGTGACTCTTCCCGATGGAGGGGAGAATTTTCACGTCATCGTC GGAGGCCGGCTTGTGCGGCCGTGACTGCCGAAGCAGCTGCTGCTCCTGGC GTCGTCTACGCCCCAGCTTCGGTGGGTGCCGTGGAAGGCTCTGAGACTTT TGCCGAATTGTACGAGGGCCGGCTGCCGGACTGGCTGATTGCACGGCTTT CGCAGCTGTGCTTCGAGCGACCGACACTGGTACAGCGGCGGGCGCTGGAA GCGATCCTGCCGGGCAGCGACGCCGTCATCCACGCGCAGACGGGGAGCGG CAAGACGCTCGCTTTCCTCCTGCCGCTCCTCGCCGCCATGGACCCGTCCC GCGCCGCAGTCCAGGGCCTCGTCGTCGTCCCGACTCGCGAGCTGGGCCTG CAGGTCGCTGCGGTGGCGAAGCGCCTCGCCGCTGCCACCGGCCCGGCCAC AGGCGGTCGGCTGCAGGTCATGTCGGTGCTCGAGGGCAGCAAGAACAAGC GGCAGCGGGCGTGGGCCAAGGCAGAGCCGCCGCACGTCATCATCGGCAAC CCCGGCAACTTTTGCGCCCTGGTTTCCTCGGGGGCCATCCGCGTCAACGC CCTCAGGTCAGTGGCAAGTGGTTGCATTCGCCTTTTGGAAGCCATCCTTG CTCCCGGGGGAGTCTCGGATGCCTTGCTGCTTTGCTAAGGATAGTATTTA CTTTTCCGTCTTTCCAATTTTCTTGCCTATTGCTGGTTATGATGGGCACG GGCGGCGGTCTATCTGTGAAGTTATCTAACGTGCCCAAAGCCCTCAGCCT TTCCCTCCCGGAGAAAAGGCTTACCTATTGAGACCTTCCCCAAGATGAGA TGTCCCCCTTGTTCGATGTTCCGAGAATAACTCCTCTTATCATTTCTTAT AACTAGGCTCTTCTACCCTCCGTTGGCCCGTCCGTGTTGCTCCACGTCGG TTCCGCGCAATGGCTTCATTAGATTCGTGGTGGTGGATGAGGTGGACGCC TGCATGCTCAACCCGGCCACCAAGGCCAACCTCCACGACCTCCTCTCCCG CCACCTCTCCCCGACCTTTGCCGACGACGACGACCCCGCCGCGGCCGAGG CGGCGGCGGCCGCGGCCGTCGCGACGGTGGTGGCTGGCGGCGCGGCAGCC GCGGCGTCCGCGGCGGCGGCCGCTGCGGCAGCGCTCCGCCGGCGACTGCC GCGGCAGACGGTCTTCGCATCGGCGACGGTGCCGCAGCACCGGCACTTCC TGAAGCAGTGCGTGCGGAACCAGTGGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18131:47..1375+

>mRNA_P-wetherbeei_contig18131.1.1 ID=mRNA_P-wetherbeei_contig18131.1.1|Name=mRNA_P-wetherbeei_contig18131.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=963bp|location=Sequence derived from alignment at P-wetherbeei_contig18131:47..1375+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGCCCAGGCCTTCTCGCTTTCGAGCTGCGGTCCTGGAGAGAAAGG
GGGAGCACGTGACTCTTCCCGATGGAGGGGAGAATTTTCACGTCATCGTC
GGAGGCCGGCTTGTGCGGCCGTGACTGCCGAAGCAGCTGCTGCTCCTGGC
GTCGTCTACGCCCCAGCTTCGGTGGGTGCCGTGGAAGGCTCTGAGACTTT
TGCCGAATTGTACGAGGGCCGGCTGCCGGACTGGCTGATTGCACGGCTTT
CGCAGCTGTGCTTCGAGCGACCGACACTGGTACAGCGGCGGGCGCTGGAA
GCGATCCTGCCGGGCAGCGACGCCGTCATCCACGCGCAGACGGGGAGCGG
CAAGACGCTCGCTTTCCTCCTGCCGCTCCTCGCCGCCATGGACCCGTCCC
GCGCCGCAGTCCAGGGCCTCGTCGTCGTCCCGACTCGCGAGCTGGGCCTG
CAGGTCGCTGCGGTGGCGAAGCGCCTCGCCGCTGCCACCGGCCCGGCCAC
AGGCGGTCGGCTGCAGGTCATGTCGGTGCTCGAGGGCAGCAAGAACAAGC
GGCAGCGGGCGTGGGCCAAGGCAGAGCCGCCGCACGTCATCATCGGCAAC
CCCGGCAACTTTTGCGCCCTGGTTTCCTCGGGGGCCATCCGCGTCAACGC
CCTCAGATTCGTGGTGGTGGATGAGGTGGACGCCTGCATGCTCAACCCGG
CCACCAAGGCCAACCTCCACGACCTCCTCTCCCGCCACCTCTCCCCGACC
TTTGCCGACGACGACGACCCCGCCGCGGCCGAGGCGGCGGCGGCCGCGGC
CGTCGCGACGGTGGTGGCTGGCGGCGCGGCAGCCGCGGCGTCCGCGGCGG
CGGCCGCTGCGGCAGCGCTCCGCCGGCGACTGCCGCGGCAGACGGTCTTC
GCATCGGCGACGGTGCCGCAGCACCGGCACTTCCTGAAGCAGTGCGTGCG
GAACCAGTGGACG
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