mRNA_P-wetherbeei_contig1813.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1813.1.1
Unique NamemRNA_P-wetherbeei_contig1813.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1813.1.1 vs. uniprot
Match: A0A7S2HUD1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HUD1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.800e-16
Identity = 41/120 (34.17%), Postives = 67/120 (55.83%), Query Frame = 1 
Query:    4 DRYAWLGQPIGADRGRIFYAAIFLRWRQEPVRIGDDIEVAGS-PD--PQIGRVEALWEDLAR----GEGRLRCRWYFRPHDVPDRILRGFPFGAPHERELLLSELRDDADVRSIMRRAFI 342
            D ++W G PI     + FYAA+ +    + + I D++ +A   PD  P I RV+ +W + +     GE +++  W+FRP D+P  +    P G P E E+  S++ DD DVR+++RR  I
Sbjct:   34 DTFSWSGDPIKCTSKKKFYAALRIG-NGDVIHIKDNVIMAPQDPDDPPYIARVDQMWHESSSAGGPGEAKIKAMWFFRPSDIPTSVANSLPGGGPVEDEVFFSQITDDNDVRTLLRRCHI 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1813.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2HUD1_9STRA8.800e-1634.17Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1813contigP-wetherbeei_contig1813:5117..5473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size357
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186136.7747338-CDS-P-wetherbeei_contig1813:5116..54731683186136.7747338-CDS-P-wetherbeei_contig1813:5116..5473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1813 5117..5473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1813.1.1prot_P-wetherbeei_contig1813.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1813 5117..5473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1813.1.1

>prot_P-wetherbeei_contig1813.1.1 ID=prot_P-wetherbeei_contig1813.1.1|Name=mRNA_P-wetherbeei_contig1813.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
MDRYAWLGQPIGADRGRIFYAAIFLRWRQEPVRIGDDIEVAGSPDPQIGR
VEALWEDLARGEGRLRCRWYFRPHDVPDRILRGFPFGAPHERELLLSELR
DDADVRSIMRRAFIARSES
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mRNA from alignment at P-wetherbeei_contig1813:5117..5473-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1813.1.1 ID=mRNA_P-wetherbeei_contig1813.1.1|Name=mRNA_P-wetherbeei_contig1813.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig1813:5117..5473- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCGGTACGCGTGGCTCGGCCAGCCCATCGGCGCGGACCGCGGCCG
GATCTTCTACGCCGCGATCTTCCTGCGGTGGCGGCAGGAGCCCGTCCGAA
TCGGCGACGACATCGAGGTCGCCGGCTCGCCCGACCCGCAGATCGGCCGC
GTGGAGGCGCTCTGGGAGGACCTGGCGCGGGGCGAAGGGCGGCTGCGCTG
CCGCTGGTACTTCCGGCCGCACGACGTTCCGGACCGCATCCTGCGCGGCT
TCCCGTTCGGCGCACCGCACGAACGGGAGCTGCTCCTGTCAGAGCTCCGC
GACGACGCTGATGTCCGCAGTATCATGCGACGCGCCTTCATCGCGCGCAG
CGAGAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1813:5117..5473-

>mRNA_P-wetherbeei_contig1813.1.1 ID=mRNA_P-wetherbeei_contig1813.1.1|Name=mRNA_P-wetherbeei_contig1813.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig1813:5117..5473- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCGGTACGCGTGGCTCGGCCAGCCCATCGGCGCGGACCGCGGCCG
GATCTTCTACGCCGCGATCTTCCTGCGGTGGCGGCAGGAGCCCGTCCGAA
TCGGCGACGACATCGAGGTCGCCGGCTCGCCCGACCCGCAGATCGGCCGC
GTGGAGGCGCTCTGGGAGGACCTGGCGCGGGGCGAAGGGCGGCTGCGCTG
CCGCTGGTACTTCCGGCCGCACGACGTTCCGGACCGCATCCTGCGCGGCT
TCCCGTTCGGCGCACCGCACGAACGGGAGCTGCTCCTGTCAGAGCTCCGC
GACGACGCTGATGTCCGCAGTATCATGCGACGCGCCTTCATCGCGCGCAG
CGAGAGC
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