mRNA_P-wetherbeei_contig18129.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18129.1.1
Unique NamemRNA_P-wetherbeei_contig18129.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18129.1.1 vs. uniprot
Match: A0A3N5HSE2_9HYPH (Xanthine dehydrogenase family protein subunit M n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3N5HSE2_9HYPH)

HSP 1 Score: 389 bits (1000), Expect = 2.360e-134
Identity = 204/266 (76.69%), Postives = 226/266 (84.96%), Query Frame = 1
Query:    1 MRYEAPETLKSAVTLLTKEKGLAFVLAGGTDLLVKMKGGFLEPDLVVDIKRIKGVFDITKSATGFKIGAAVPGVQLGENAALVKAWPGVVEGANLIGSKQVQGRCTMVGNLCNGSPAADGVPALIAANAKVVISGPKGKRTIPVEQVPVSPGRISLKKGEIIESILLPKRPANSSDAYLRFIPRTEMDIAVVSAAVNLTLDGKGTVKDARVVLGAVAPTIIVVPAAAKALIGSKLDAAALEKLAAACSAACKPIDDKRGTIEFRTK 798
            M Y APET+K+AV LL K KG A+VLAGG+DLLV+MKGGF+EPDLVVDIKRIK + +I K+ATGF IGAAVP   LGEN AL KAWPGVVE ANLIGSKQ+QGRCT+ GNLCN  PAAD VPAL+AA AK VI GPKGKR +PVEQVPV PG+ SLKKGE++ESI LP R   S DAYLRFIPR+EMDIAVVSA VNL+LD KG V DARV LGAVAPT+++VPAAAKALIGSKLD AALEKL AA SAAC+PIDDKRGTIEFRTK
Sbjct:    1 MEYTAPETVKAAVALLAKAKGSAYVLAGGSDLLVRMKGGFIEPDLVVDIKRIKAMREIKKTATGFSIGAAVPCAALGENKALAKAWPGVVEAANLIGSKQIQGRCTITGNLCNAGPAADSVPALVAAGAKAVIQGPKGKRVVPVEQVPVGPGKTSLKKGELVESIQLPARKPRSGDAYLRFIPRSEMDIAVVSAGVNLSLDAKGVVTDARVSLGAVAPTVLLVPAAAKALIGSKLDDAALEKLGAAASAACRPIDDKRGTIEFRTK 266          
BLAST of mRNA_P-wetherbeei_contig18129.1.1 vs. uniprot
Match: A0A6G6WP83_9HYPH (Xanthine dehydrogenase family protein subunit M n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6G6WP83_9HYPH)

HSP 1 Score: 382 bits (980), Expect = 2.510e-131
Identity = 199/266 (74.81%), Postives = 230/266 (86.47%), Query Frame = 1
Query:    1 MRYEAPETLKSAVTLLTKEKGLAFVLAGGTDLLVKMKGGFLEPDLVVDIKRIKGVFDITKSATGFKIGAAVPGVQLGENAALVKAWPGVVEGANLIGSKQVQGRCTMVGNLCNGSPAADGVPALIAANAKVVISGPKGKRTIPVEQVPVSPGRISLKKGEIIESILLPKRPANSSDAYLRFIPRTEMDIAVVSAAVNLTLDGKGTVKDARVVLGAVAPTIIVVPAAAKALIGSKLDAAALEKLAAACSAACKPIDDKRGTIEFRTK 798
            MRYEAP + K+AVTLL+KEKG + +LAGGTDLLV+MKGGF+EPDL+VDIK I  +  I K+A+GF++GAAV GV+LGE+A + KAWPGVVE ANLIGSKQVQGRCTMVGNLCN SPAAD VPALIAA A+ VI GPK KRT+PVE++P  PGR SL KGEI+ES+LLPKRPA S DAYLRFIPR+EMDIAVVSA VNL LD KG +K+ARV LGAVAPT+++V  AAKA+IGSKLD  AL++LAAACSAAC PIDDKRGTIEFRTK
Sbjct:    1 MRYEAPSSTKAAVTLLSKEKGKSAILAGGTDLLVRMKGGFIEPDLIVDIKHIPQMRQIKKTASGFQVGAAVSGVELGESA-VKKAWPGVVEAANLIGSKQVQGRCTMVGNLCNASPAADSVPALIAAGAQAVIVGPKKKRTVPVEKIPTGPGRTSLAKGEIVESLLLPKRPARSGDAYLRFIPRSEMDIAVVSAGVNLVLDAKGVIKEARVALGAVAPTVLLVAPAAKAIIGSKLDDEALDRLAAACSAACSPIDDKRGTIEFRTK 265          
BLAST of mRNA_P-wetherbeei_contig18129.1.1 vs. uniprot
Match: UPI001985FA56 (Xanthine dehydrogenase family protein subunit M n=2 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI001985FA56)

HSP 1 Score: 380 bits (976), Expect = 1.060e-130
Identity = 195/266 (73.31%), Postives = 230/266 (86.47%), Query Frame = 1
Query:    1 MRYEAPETLKSAVTLLTKEKGLAFVLAGGTDLLVKMKGGFLEPDLVVDIKRIKGVFDITKSATGFKIGAAVPGVQLGENAALVKAWPGVVEGANLIGSKQVQGRCTMVGNLCNGSPAADGVPALIAANAKVVISGPKGKRTIPVEQVPVSPGRISLKKGEIIESILLPKRPANSSDAYLRFIPRTEMDIAVVSAAVNLTLDGKGTVKDARVVLGAVAPTIIVVPAAAKALIGSKLDAAALEKLAAACSAACKPIDDKRGTIEFRTK 798
            M+YEAP+T K+AV LL K +G A+VLAGG+DLLV+MKGGF+EPDLVVDIKRIK + ++ K+ATG+ IGAAV   QLGEN AL+K WPGVVE ANLIGSKQVQGRCT+ GN+CN  PAAD VPA++AA AK  I+GPKG+R+IPVEQV V PG+ SLKKGE++E+ILLPKRPA S DAYLRFIPR+EMDIAVVS  ++LTLDGKG VKDARV LGAVAPT+++V  AA+A+IGS LD AALEKL +ACSAAC+PIDDKRGTIEFRTK
Sbjct:    1 MQYEAPQTTKAAVALLAKARGSAYVLAGGSDLLVRMKGGFIEPDLVVDIKRIKPMREVKKTATGWTIGAAVSCAQLGENKALIKDWPGVVEAANLIGSKQVQGRCTISGNMCNAGPAADSVPAMVAAGAKAQIAGPKGRRSIPVEQVAVGPGKTSLKKGELVEAILLPKRPARSGDAYLRFIPRSEMDIAVVSCGISLTLDGKGMVKDARVSLGAVAPTVLLVADAARAIIGSNLDEAALEKLGSACSAACRPIDDKRGTIEFRTK 266          
BLAST of mRNA_P-wetherbeei_contig18129.1.1 vs. uniprot
Match: A0A4R6WTP8_9PROT (Carbon-monoxide dehydrogenase medium subunit n=1 Tax=Dongia mobilis TaxID=578943 RepID=A0A4R6WTP8_9PROT)

HSP 1 Score: 379 bits (973), Expect = 3.020e-130
Identity = 197/266 (74.06%), Postives = 221/266 (83.08%), Query Frame = 1
Query:    1 MRYEAPETLKSAVTLLTKEKGLAFVLAGGTDLLVKMKGGFLEPDLVVDIKRIKGVFDITKSATGFKIGAAVPGVQLGENAALVKAWPGVVEGANLIGSKQVQGRCTMVGNLCNGSPAADGVPALIAANAKVVISGPKGKRTIPVEQVPVSPGRISLKKGEIIESILLPKRPANSSDAYLRFIPRTEMDIAVVSAAVNLTLDGKGTVKDARVVLGAVAPTIIVVPAAAKALIGSKLDAAALEKLAAACSAACKPIDDKRGTIEFRTK 798
            M+YE P TLK+A  +L KEKG AF+LAGGTDLLV+++ GF+EPDL+VDIK   G   I K+A+GFKIGAAV G +LGENAAL KAWPGVVE ANLIGSKQVQGRCTM GNLCN SPAAD VPAL+AA AK V+ GPKGKRT+ VE VP  PGR SLKKGEIIES++LPKR   S DAYLRFIPRTEMDIAVV   VNLTLDGKG V  ARV LGAVAPT+++VPAAAKA+IG+KLD AAL+ LAAAC+AAC PIDDKRGT EFR K
Sbjct:    1 MKYERPTTLKAAAQMLAKEKGKAFILAGGTDLLVRLRTGFIEPDLIVDIKDTAGARSIQKTASGFKIGAAVSGAELGENAALKKAWPGVVEAANLIGSKQVQGRCTMTGNLCNASPAADSVPALVAAGAKAVVVGPKGKRTLAVEDVPAGPGRTSLKKGEIIESLILPKRAPKSGDAYLRFIPRTEMDIAVVGVGVNLTLDGKGIVTKARVALGAVAPTVVLVPAAAKAIIGTKLDKAALDALAAACAAACNPIDDKRGTREFRIK 266          
BLAST of mRNA_P-wetherbeei_contig18129.1.1 vs. uniprot
Match: A0A5C7NIN5_9PROT (Xanthine dehydrogenase family protein subunit M n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NIN5_9PROT)

HSP 1 Score: 368 bits (945), Expect = 5.480e-126
Identity = 192/266 (72.18%), Postives = 221/266 (83.08%), Query Frame = 1
Query:    1 MRYEAPETLKSAVTLLTKEKGLAFVLAGGTDLLVKMKGGFLEPDLVVDIKRIKGVFDITKSATGFKIGAAVPGVQLGENAALVKAWPGVVEGANLIGSKQVQGRCTMVGNLCNGSPAADGVPALIAANAKVVISGPKGKRTIPVEQVPVSPGRISLKKGEIIESILLPKRPANSSDAYLRFIPRTEMDIAVVSAAVNLTLDGKGTVKDARVVLGAVAPTIIVVPAAAKALIGSKLDAAALEKLAAACSAACKPIDDKRGTIEFRTK 798
            MRYE+P + K+A  LL+KEKG AF+LAGGTDLLV+M+ GF+EPDLVVDIKRI G  +I K+ +GFKIGAAV G +LGE+ AL KAWPGVVE ANLIGSKQVQGRCTM GNLCN SPAAD VPAL+AA AK VI GPKGKR + VE++P  PG+ SLKKGEI+ESI+LPKR   S DAYLRFIPR+EMDIAVV   VN+TLD KG V  ARV LGAVAPT+ +VPAAAKALIG+K++ AAL+KLA AC+AAC PIDDKRGT EFR K
Sbjct:    1 MRYESPTSFKAAAELLSKEKGQAFILAGGTDLLVRMRTGFIEPDLVVDIKRIGGSREIKKTESGFKIGAAVSGAELGEHKALKKAWPGVVEAANLIGSKQVQGRCTMAGNLCNASPAADSVPALVAAGAKAVIVGPKGKRKVAVEEIPTGPGKTSLKKGEIVESIILPKRAPKSGDAYLRFIPRSEMDIAVVGVGVNVTLDAKGIVTKARVALGAVAPTVRLVPAAAKALIGTKMEDAALDKLAEACAAACSPIDDKRGTREFRIK 266          
BLAST of mRNA_P-wetherbeei_contig18129.1.1 vs. uniprot
Match: A0A847ZXT6_9HYPH (Xanthine dehydrogenase family protein subunit M n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZXT6_9HYPH)

HSP 1 Score: 363 bits (932), Expect = 5.200e-124
Identity = 193/265 (72.83%), Postives = 213/265 (80.38%), Query Frame = 1
Query:    1 MRYEAPETLKSAVTLLTKEKGLAFVLAGGTDLLVKMKGGFLEPDLVVDIKRIKGVFDITKSATGFKIGAAVPGVQLGENAALVKAWPGVVEGANLIGSKQVQGRCTMVGNLCNGSPAADGVPALIAANAKVVISGPKGKRTIPVEQVPVSPGRISLKKGEIIESILLPKRPANSSDAYLRFIPRTEMDIAVVSAAVNLTLDGKGTVKDARVVLGAVAPTIIVVPAAAKALIGSKLDAAALEKLAAACSAACKPIDDKRGTIEFRT 795
            MRYE+P T K A  LL KEKG AFVLAGGTDLLVKMK G LEPDLVVDIKRIKG+ DI K+A+GF IGA  P   L ENAAL+KAWPGVVE A LIGSKQVQGRCTMVGNLCN SPA D VPAL+AA AKVV+  PKGKR + VE VP   GR  LKKGEIIE++ LP +   S DAYLRFIPRTEMDIAVVS  +NLTLDGKG +  ARV LGAVAPT+++V  AAKA+IGSKLD AA  +LAAA SAAC+PIDDKRGT+EFRT
Sbjct:    1 MRYESPATTKEACALLAKEKGAAFVLAGGTDLLVKMKAGMLEPDLVVDIKRIKGMRDIKKTASGFVIGAGTPNAALSENAALLKAWPGVVEAAQLIGSKQVQGRCTMVGNLCNASPAGDAVPALVAAGAKVVVVSPKGKRKLAVEDVPAGVGRTVLKKGEIIEAVELPAKKPKSGDAYLRFIPRTEMDIAVVSVGINLTLDGKGVITAARVALGAVAPTVLLVKEAAKAIIGSKLDDAAKARLAAAASAACRPIDDKRGTVEFRT 265          
BLAST of mRNA_P-wetherbeei_contig18129.1.1 vs. uniprot
Match: A0A2W2BCI0_9HYPH (Xanthine dehydrogenase family protein subunit M n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2BCI0_9HYPH)

HSP 1 Score: 363 bits (932), Expect = 5.200e-124
Identity = 193/266 (72.56%), Postives = 219/266 (82.33%), Query Frame = 1
Query:    1 MRYEAPETLKSAVTLLTKEKGLAFVLAGGTDLLVKMKGGFLEPDLVVDIKRIKGVFDITKSATGFKIGAAVPGVQLGENAALVKAWPGVVEGANLIGSKQVQGRCTMVGNLCNGSPAADGVPALIAANAKVVISGPKGKRTIPVEQVPVSPGRISLKKGEIIESILLPKRPANSSDAYLRFIPRTEMDIAVVSAAVNLTLDGKGTVKDARVVLGAVAPTIIVVPAAAKALIGSKLDAAALEKLAAACSAACKPIDDKRGTIEFRTK 798
            M+YEAPET K+AV LL K KG A+VLAGG+DLLV+MKGGF+EPDLVVDIKRIK + +I K+A+GF IGAAV   ++ EN AL+KAWPGVVE A LIGSKQVQ RCT+ GNLCN SPAAD VPAL+AA AK VI GP+GKR + VE +PV PGR SLKKGE+IE+I LP R   S DAYLRFIPRTEMDIAVVSA V+LTL  KG +KDARV LGAVAPT+ +V  AAKA+IG+KLD AALEKL  A SAAC PIDDKRGTIEFRTK
Sbjct:    1 MQYEAPETTKAAVGLLAKAKGSAYVLAGGSDLLVRMKGGFVEPDLVVDIKRIKPMREIKKTASGFTIGAAVSCAEMNENKALIKAWPGVVEAAGLIGSKQVQSRCTVTGNLCNSSPAADSVPALVAAGAKAVIQGPRGKRKVAVEDIPVGPGRNSLKKGELIEAIELPARKGKSGDAYLRFIPRTEMDIAVVSAGVSLTLGDKGVIKDARVALGAVAPTVRLVKEAAKAIIGTKLDEAALEKLGKAASAACSPIDDKRGTIEFRTK 266          
BLAST of mRNA_P-wetherbeei_contig18129.1.1 vs. uniprot
Match: A0A1V8RM95_9HYPH (Oxidoreductase n=3 Tax=Phyllobacteriaceae TaxID=69277 RepID=A0A1V8RM95_9HYPH)

HSP 1 Score: 357 bits (917), Expect = 9.930e-122
Identity = 184/266 (69.17%), Postives = 218/266 (81.95%), Query Frame = 1
Query:    1 MRYEAPETLKSAVTLLTKEKGLAFVLAGGTDLLVKMKGGFLEPDLVVDIKRIKGVFDITKSATGFKIGAAVPGVQLGENAALVKAWPGVVEGANLIGSKQVQGRCTMVGNLCNGSPAADGVPALIAANAKVVISGPKGKRTIPVEQVPVSPGRISLKKGEIIESILLPKRPANSSDAYLRFIPRTEMDIAVVSAAVNLTLDGKGTVKDARVVLGAVAPTIIVVPAAAKALIGSKLDAAALEKLAAACSAACKPIDDKRGTIEFRTK 798
            MRY  P++++ AV LL +  G A +LAGG+DLLV+MKGGF+EPDL++DIK I G+ +I ++A GF IG+AVP   LGENAAL KAWPGVVE A LIGSKQVQGRCT+VGNLCN SPAAD VPA++AA AK V+ GP G+RT+PVE VP  PG+ SL KGEIIE+ILL KRP ++ DAYLRFIPRTEMDIAVVSA VNLTLD KGTVK ARV LGA APT+++V  AA+ L+GSKLD AALE+LA  CS AC+PIDDKRGT+EFR K
Sbjct:    1 MRYIRPQSIEDAVGLLAEPDGTAAILAGGSDLLVRMKGGFIEPDLIIDIKAIHGLGEIRETAEGFSIGSAVPCAVLGENAALKKAWPGVVEAARLIGSKQVQGRCTIVGNLCNASPAADSVPAMVAAGAKAVVVGPSGRRTVPVEAVPAGPGKTSLAKGEIIEAILLDKRPPHAGDAYLRFIPRTEMDIAVVSAGVNLTLDEKGTVKTARVALGAAAPTVLLVEEAAEVLVGSKLDEAALERLAKVCSGACRPIDDKRGTVEFRRK 266          
BLAST of mRNA_P-wetherbeei_contig18129.1.1 vs. uniprot
Match: A0A3C0T7A7_9GAMM (Oxidoreductase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3C0T7A7_9GAMM)

HSP 1 Score: 354 bits (909), Expect = 1.630e-120
Identity = 192/266 (72.18%), Postives = 214/266 (80.45%), Query Frame = 1
Query:    1 MRYEAPETLKSAVTLLTKEKGLAFVLAGGTDLLVKMKGGFLEPDLVVDIKRIKGVFDITKSATGFKIGAAVPGVQLGENAALVKAWPGVVEGANLIGSKQVQGRCTMVGNLCNGSPAADGVPALIAANAKVVISGPKGKRTIPVEQVPVSPGRISLKKGEIIESILLPKRPANSSDAYLRFIPRTEMDIAVVSAAVNLTLDGKGTVKDARVVLGAVAPTIIVVPAAAKALIGSKLDAAALEKLAAACSAACKPIDDKRGTIEFRTK 798
            MRYEAP T K A TLL KE G A VLAGGTDLLV+MK G  EPDL+VDIK I  + +I  SA+G KIGAAV G +LG+N AL KAWPGVVE  NLIGS QVQGRCTMVGNLCN SPAAD VPA+IAA AK V+ GPK +RT+ VE +   PG+ SL+KGE+IESI LPKR   S DAYLRFIPRTEMDIAVVSA VNLTL+ KG VK ARV LGAVAPT ++VP AAKA+IG+KLD AALE LAAACSAAC PIDDKRGT+E+RTK
Sbjct:    1 MRYEAPTTTKEAATLLAKENGEACVLAGGTDLLVRMKMGLSEPDLIVDIKHIPAMQEIKISASGTKIGAAVSGTRLGDNKALKKAWPGVVEATNLIGSDQVQGRCTMVGNLCNASPAADSVPAMIAAGAKAVVVGPKKRRTVTVENIVTGPGQTSLEKGEVIESITLPKRSGKSGDAYLRFIPRTEMDIAVVSAGVNLTLE-KGVVKTARVCLGAVAPTAVLVPDAAKAIIGTKLDKAALESLAAACSAACNPIDDKRGTVEYRTK 265          
BLAST of mRNA_P-wetherbeei_contig18129.1.1 vs. uniprot
Match: A0A1Z8RCC5_9GAMM (Oxidoreductase n=2 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A1Z8RCC5_9GAMM)

HSP 1 Score: 353 bits (905), Expect = 6.630e-120
Identity = 186/266 (69.92%), Postives = 210/266 (78.95%), Query Frame = 1
Query:    1 MRYEAPETLKSAVTLLTKEKGLAFVLAGGTDLLVKMKGGFLEPDLVVDIKRIKGVFDITKSATGFKIGAAVPGVQLGENAALVKAWPGVVEGANLIGSKQVQGRCTMVGNLCNGSPAADGVPALIAANAKVVISGPKGKRTIPVEQVPVSPGRISLKKGEIIESILLPKRPANSSDAYLRFIPRTEMDIAVVSAAVNLTLDGKGTVKDARVVLGAVAPTIIVVPAAAKALIGSKLDAAALEKLAAACSAACKPIDDKRGTIEFRTK 798
            MRYEAP T K A  LL KEKG AFVLAGGTDLLV+MK G  EPDLVVDIK I  + +I  +A+GFKIGA V G  LGEN  L KAWPGVVE ANLIGS Q+QGRCTMVGNLCN SPAAD VPA+IAA AK  + GP G+RT+ VE +   PG  SL KGE++ESI LPKRP  S DAYLRFIPRTEMDIAVVSA VNLTL+ KG +K ARV LGAVAPT ++V  AAKA++G+KLD  AL+ LAAACSAAC PIDDKRGT+E+RT+
Sbjct:    1 MRYEAPNTTKEAAKLLAKEKGAAFVLAGGTDLLVRMKAGMTEPDLVVDIKHIPAMQEIKTTASGFKIGAVVSGATLGENKKLKKAWPGVVEAANLIGSDQIQGRCTMVGNLCNASPAADSVPAMIAAGAKAAVVGPNGRRTVAVENIATGPGSTSLAKGEVVESISLPKRPTKSGDAYLRFIPRTEMDIAVVSAGVNLTLE-KGVIKTARVALGAVAPTALLVENAAKAIVGTKLDDEALDALAAACSAACNPIDDKRGTVEYRTR 265          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18129.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N5HSE2_9HYPH2.360e-13476.69Xanthine dehydrogenase family protein subunit M n=... [more]
A0A6G6WP83_9HYPH2.510e-13174.81Xanthine dehydrogenase family protein subunit M n=... [more]
UPI001985FA561.060e-13073.31Xanthine dehydrogenase family protein subunit M n=... [more]
A0A4R6WTP8_9PROT3.020e-13074.06Carbon-monoxide dehydrogenase medium subunit n=1 T... [more]
A0A5C7NIN5_9PROT5.480e-12672.18Xanthine dehydrogenase family protein subunit M n=... [more]
A0A847ZXT6_9HYPH5.200e-12472.83Xanthine dehydrogenase family protein subunit M n=... [more]
A0A2W2BCI0_9HYPH5.200e-12472.56Xanthine dehydrogenase family protein subunit M n=... [more]
A0A1V8RM95_9HYPH9.930e-12269.17Oxidoreductase n=3 Tax=Phyllobacteriaceae TaxID=69... [more]
A0A3C0T7A7_9GAMM1.630e-12072.18Oxidoreductase n=2 Tax=Gammaproteobacteria bacteri... [more]
A0A1Z8RCC5_9GAMM6.630e-12069.92Oxidoreductase n=2 Tax=unclassified Gammaproteobac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18129contigP-wetherbeei_contig18129:3..800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1297570.MESS4_830260
Preferred namexdhB
PFAMsCO_deh_flav_C,FAD_binding_5
Model size798
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC02800
KEGG koko:K03519
KEGG ReactionR11168
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.11e-119
EggNOG OGsCOG1319@1|root,COG1319@2|Bacteria,1RCRH@1224|Proteobacteria,2TU08@28211|Alphaproteobacteria,43PT0@69277|Phyllobacteriaceae
EC1.2.5.3
DescriptionAerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
Cds size798
COG categoryC
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186136.7170947-CDS-P-wetherbeei_contig18129:2..8001683186136.7170947-CDS-P-wetherbeei_contig18129:2..800Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18129 3..800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18129.1.1prot_P-wetherbeei_contig18129.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18129 3..800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18129.1.1

>prot_P-wetherbeei_contig18129.1.1 ID=prot_P-wetherbeei_contig18129.1.1|Name=mRNA_P-wetherbeei_contig18129.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=266bp
MRYEAPETLKSAVTLLTKEKGLAFVLAGGTDLLVKMKGGFLEPDLVVDIK
RIKGVFDITKSATGFKIGAAVPGVQLGENAALVKAWPGVVEGANLIGSKQ
VQGRCTMVGNLCNGSPAADGVPALIAANAKVVISGPKGKRTIPVEQVPVS
PGRISLKKGEIIESILLPKRPANSSDAYLRFIPRTEMDIAVVSAAVNLTL
DGKGTVKDARVVLGAVAPTIIVVPAAAKALIGSKLDAAALEKLAAACSAA
CKPIDDKRGTIEFRTK
back to top

mRNA from alignment at P-wetherbeei_contig18129:3..800-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18129.1.1 ID=mRNA_P-wetherbeei_contig18129.1.1|Name=mRNA_P-wetherbeei_contig18129.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=798bp|location=Sequence derived from alignment at P-wetherbeei_contig18129:3..800- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGATACGAAGCACCGGAAACACTTAAATCGGCGGTAACACTGCTGAC CAAGGAAAAGGGCCTGGCCTTTGTCCTCGCGGGAGGAACGGACCTGCTGG TCAAAATGAAAGGCGGCTTCCTGGAGCCAGACCTTGTCGTTGATATCAAG CGCATCAAGGGTGTCTTTGACATCACGAAATCCGCCACCGGATTCAAGAT CGGCGCCGCCGTTCCGGGCGTGCAACTGGGTGAAAATGCGGCCCTCGTAA AAGCCTGGCCCGGCGTTGTTGAAGGGGCAAACCTCATCGGCTCCAAGCAG GTGCAGGGCCGCTGCACCATGGTCGGCAACCTCTGCAACGGTTCGCCCGC TGCCGATGGCGTGCCCGCACTCATCGCCGCCAATGCAAAGGTCGTGATTT CCGGCCCCAAGGGCAAGCGCACCATTCCGGTTGAACAGGTTCCGGTGTCG CCGGGCCGCATCTCGCTCAAGAAGGGCGAGATCATTGAATCCATTCTGCT GCCAAAGCGCCCGGCAAATTCCAGCGATGCCTATCTGCGTTTCATTCCGC GCACCGAAATGGATATCGCCGTGGTCAGCGCTGCCGTCAACCTCACGCTC GATGGCAAAGGCACGGTCAAGGATGCCCGTGTTGTTCTGGGCGCGGTCGC TCCAACGATCATCGTTGTTCCCGCCGCAGCAAAAGCCCTGATCGGCTCGA AGCTTGATGCCGCAGCACTTGAAAAACTCGCCGCCGCCTGCTCCGCCGCC TGCAAGCCCATTGATGACAAGCGCGGCACCATCGAATTCAGAACCAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18129:3..800-

>mRNA_P-wetherbeei_contig18129.1.1 ID=mRNA_P-wetherbeei_contig18129.1.1|Name=mRNA_P-wetherbeei_contig18129.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=798bp|location=Sequence derived from alignment at P-wetherbeei_contig18129:3..800- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGATACGAAGCACCGGAAACACTTAAATCGGCGGTAACACTGCTGAC
CAAGGAAAAGGGCCTGGCCTTTGTCCTCGCGGGAGGAACGGACCTGCTGG
TCAAAATGAAAGGCGGCTTCCTGGAGCCAGACCTTGTCGTTGATATCAAG
CGCATCAAGGGTGTCTTTGACATCACGAAATCCGCCACCGGATTCAAGAT
CGGCGCCGCCGTTCCGGGCGTGCAACTGGGTGAAAATGCGGCCCTCGTAA
AAGCCTGGCCCGGCGTTGTTGAAGGGGCAAACCTCATCGGCTCCAAGCAG
GTGCAGGGCCGCTGCACCATGGTCGGCAACCTCTGCAACGGTTCGCCCGC
TGCCGATGGCGTGCCCGCACTCATCGCCGCCAATGCAAAGGTCGTGATTT
CCGGCCCCAAGGGCAAGCGCACCATTCCGGTTGAACAGGTTCCGGTGTCG
CCGGGCCGCATCTCGCTCAAGAAGGGCGAGATCATTGAATCCATTCTGCT
GCCAAAGCGCCCGGCAAATTCCAGCGATGCCTATCTGCGTTTCATTCCGC
GCACCGAAATGGATATCGCCGTGGTCAGCGCTGCCGTCAACCTCACGCTC
GATGGCAAAGGCACGGTCAAGGATGCCCGTGTTGTTCTGGGCGCGGTCGC
TCCAACGATCATCGTTGTTCCCGCCGCAGCAAAAGCCCTGATCGGCTCGA
AGCTTGATGCCGCAGCACTTGAAAAACTCGCCGCCGCCTGCTCCGCCGCC
TGCAAGCCCATTGATGACAAGCGCGGCACCATCGAATTCAGAACCAAG
back to top