mRNA_P-wetherbeei_contig18122.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18122.1.1
Unique NamemRNA_P-wetherbeei_contig18122.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18122.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18122contigP-wetherbeei_contig18122:698..1194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size497
Hectar predicted targeting categorysignal peptide
Exons1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186136.633713-UTR-P-wetherbeei_contig18122:697..7651683186136.633713-UTR-P-wetherbeei_contig18122:697..765Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18122 698..765 -
1683186136.6526232-UTR-P-wetherbeei_contig18122:1191..11941683186136.6526232-UTR-P-wetherbeei_contig18122:1191..1194Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18122 1192..1194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186136.6434526-CDS-P-wetherbeei_contig18122:765..11911683186136.6434526-CDS-P-wetherbeei_contig18122:765..1191Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18122 766..1191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18122.1.1prot_P-wetherbeei_contig18122.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18122 766..1191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18122.1.1

>prot_P-wetherbeei_contig18122.1.1 ID=prot_P-wetherbeei_contig18122.1.1|Name=mRNA_P-wetherbeei_contig18122.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MLLVNVPMWFSAIWKVRRHSLLAYCVAFHCVAWRVAWHCVAIQAALVCEF
CGWRQGGLVRSSGGWRFACRGRLELDCFADPEVWLCYCFRKCCLCMCACI
FLHEAAPLALVSAVFRPGVSGFVSLFRRLSLPEARSPVEAS*
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mRNA from alignment at P-wetherbeei_contig18122:698..1194-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18122.1.1 ID=mRNA_P-wetherbeei_contig18122.1.1|Name=mRNA_P-wetherbeei_contig18122.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=497bp|location=Sequence derived from alignment at P-wetherbeei_contig18122:698..1194- (Phaeothamnion wetherbeei SAG_119_79)
CTCATGCTGCTCGTCAACGTGCCCATGTGGTTCTCCGCCATCTGGAAGGT
GCGGCGTCATTCTCTTCTAGCTTACTGCGTGGCGTTTCATTGCGTGGCAT
GGCGTGTTGCGTGGCACTGCGTTGCGATTCAAGCTGCATTGGTTTGCGAA
TTTTGCGGCTGGCGACAAGGTGGGTTGGTCCGTTCATCTGGCGGGTGGCG
CTTTGCTTGTCGTGGCCGGCTCGAGCTCGACTGTTTCGCGGATCCGGAAG
TTTGGCTCTGTTACTGCTTCCGGAAGTGTTGTTTGTGTATGTGTGCATGC
ATTTTTCTGCATGAAGCCGCTCCGCTCGCTCTGGTCAGCGCCGTGTTTCG
CCCGGGCGTGAGTGGCTTTGTTAGCTTGTTTAGGCGCTTGTCCCTTCCAG
AAGCGCGATCCCCGGTTGAGGCGTCTTGACCAGTTCGACTACTTATTCTG
CTAACGCATCCTTGCGTCTCGAGCGACCCGCTGATATCCCTTATCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18122:698..1194-

>mRNA_P-wetherbeei_contig18122.1.1 ID=mRNA_P-wetherbeei_contig18122.1.1|Name=mRNA_P-wetherbeei_contig18122.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig18122:698..1194- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCTCGTCAACGTGCCCATGTGGTTCTCCGCCATCTGGAAGGTGCG
GCGTCATTCTCTTCTAGCTTACTGCGTGGCGTTTCATTGCGTGGCATGGC
GTGTTGCGTGGCACTGCGTTGCGATTCAAGCTGCATTGGTTTGCGAATTT
TGCGGCTGGCGACAAGGTGGGTTGGTCCGTTCATCTGGCGGGTGGCGCTT
TGCTTGTCGTGGCCGGCTCGAGCTCGACTGTTTCGCGGATCCGGAAGTTT
GGCTCTGTTACTGCTTCCGGAAGTGTTGTTTGTGTATGTGTGCATGCATT
TTTCTGCATGAAGCCGCTCCGCTCGCTCTGGTCAGCGCCGTGTTTCGCCC
GGGCGTGAGTGGCTTTGTTAGCTTGTTTAGGCGCTTGTCCCTTCCAGAAG
CGCGATCCCCGGTTGAGGCGTCTTGA
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