mRNA_P-wetherbeei_contig18097.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18097.1.1
Unique NamemRNA_P-wetherbeei_contig18097.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18097.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18097contigP-wetherbeei_contig18097:44..898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog983920.Y88_1553
PFAMsSPOR,Sel1
Model size855
Max annot lvl204457|Sphingomonadales
KEGG koko:K07126
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.000218
EggNOG OGsCOG0790@1|root,COG0790@2|Bacteria,1RJ71@1224|Proteobacteria,2U15P@28211|Alphaproteobacteria,2K032@204457|Sphingomonadales
DescriptionFOG TPR repeat, SEL1 subfamily
Cds size855
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186136.1151621-CDS-P-wetherbeei_contig18097:43..8981683186136.1151621-CDS-P-wetherbeei_contig18097:43..898Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18097 44..898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18097.1.1prot_P-wetherbeei_contig18097.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18097 44..898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18097.1.1

>prot_P-wetherbeei_contig18097.1.1 ID=prot_P-wetherbeei_contig18097.1.1|Name=mRNA_P-wetherbeei_contig18097.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=285bp
MAALVFPRPSGAFVVRVRRMLAACLLASSLHSFADVPEGVEAFGRARYPD
ARKELAGPAEAGDPQAMVYMGEMLMRGLGGSRDELKARDYITRSQAAGNR
RAMFMLGTMHLTGNLVERDVAKGTELVRQAADKGEAAAQNALGVWLANGS
NGFSKDDATALAWFRLAADQKFAAAMGWVGAFTEAGRDGMAQDNLQALDW
YKKSGELGNSASMISAGRMYALGRGVSPDGGEALRWLRRAAALNNSDAYG
WIASVYEFGRGGALKSPVLAYAWYAAVPANGSSHA
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mRNA from alignment at P-wetherbeei_contig18097:44..898-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18097.1.1 ID=mRNA_P-wetherbeei_contig18097.1.1|Name=mRNA_P-wetherbeei_contig18097.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=855bp|location=Sequence derived from alignment at P-wetherbeei_contig18097:44..898- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGCTGGTTTTCCCCCGACCGTCAGGAGCATTCGTGGTCCGAGT
CCGACGCATGCTGGCGGCGTGTCTGCTCGCAAGTTCCCTCCACTCTTTCG
CCGACGTGCCCGAGGGCGTCGAAGCTTTCGGAAGAGCCCGCTATCCCGAC
GCCCGCAAGGAACTCGCCGGCCCGGCGGAGGCCGGCGACCCCCAGGCCAT
GGTCTACATGGGCGAGATGCTGATGCGCGGTCTCGGCGGGTCGCGCGACG
AACTCAAGGCGCGTGATTACATCACCCGCTCGCAGGCTGCGGGCAATCGG
CGCGCGATGTTCATGCTGGGGACCATGCACCTCACCGGCAACCTGGTGGA
GCGCGACGTGGCGAAAGGCACGGAGTTGGTACGCCAGGCCGCCGACAAGG
GCGAGGCCGCTGCGCAAAACGCCCTCGGGGTGTGGCTCGCCAACGGCAGC
AACGGATTCTCCAAGGACGACGCGACGGCGCTGGCCTGGTTCCGTTTGGC
GGCCGACCAGAAGTTCGCGGCCGCCATGGGCTGGGTCGGCGCGTTCACCG
AGGCGGGCCGGGACGGGATGGCGCAGGACAACCTGCAGGCGCTCGACTGG
TACAAGAAGTCGGGAGAGCTCGGCAACAGCGCGTCGATGATCTCGGCGGG
GCGCATGTACGCCCTCGGGCGCGGCGTCAGCCCGGATGGCGGGGAAGCAT
TGCGCTGGCTGCGTCGCGCCGCGGCGCTGAACAACAGCGACGCCTACGGG
TGGATCGCCAGCGTGTACGAGTTCGGGCGCGGCGGTGCTCTCAAAAGCCC
GGTGCTGGCCTACGCCTGGTACGCGGCAGTGCCCGCCAACGGCTCGTCGC
ACGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18097:44..898-

>mRNA_P-wetherbeei_contig18097.1.1 ID=mRNA_P-wetherbeei_contig18097.1.1|Name=mRNA_P-wetherbeei_contig18097.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=855bp|location=Sequence derived from alignment at P-wetherbeei_contig18097:44..898- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGCTGGTTTTCCCCCGACCGTCAGGAGCATTCGTGGTCCGAGT
CCGACGCATGCTGGCGGCGTGTCTGCTCGCAAGTTCCCTCCACTCTTTCG
CCGACGTGCCCGAGGGCGTCGAAGCTTTCGGAAGAGCCCGCTATCCCGAC
GCCCGCAAGGAACTCGCCGGCCCGGCGGAGGCCGGCGACCCCCAGGCCAT
GGTCTACATGGGCGAGATGCTGATGCGCGGTCTCGGCGGGTCGCGCGACG
AACTCAAGGCGCGTGATTACATCACCCGCTCGCAGGCTGCGGGCAATCGG
CGCGCGATGTTCATGCTGGGGACCATGCACCTCACCGGCAACCTGGTGGA
GCGCGACGTGGCGAAAGGCACGGAGTTGGTACGCCAGGCCGCCGACAAGG
GCGAGGCCGCTGCGCAAAACGCCCTCGGGGTGTGGCTCGCCAACGGCAGC
AACGGATTCTCCAAGGACGACGCGACGGCGCTGGCCTGGTTCCGTTTGGC
GGCCGACCAGAAGTTCGCGGCCGCCATGGGCTGGGTCGGCGCGTTCACCG
AGGCGGGCCGGGACGGGATGGCGCAGGACAACCTGCAGGCGCTCGACTGG
TACAAGAAGTCGGGAGAGCTCGGCAACAGCGCGTCGATGATCTCGGCGGG
GCGCATGTACGCCCTCGGGCGCGGCGTCAGCCCGGATGGCGGGGAAGCAT
TGCGCTGGCTGCGTCGCGCCGCGGCGCTGAACAACAGCGACGCCTACGGG
TGGATCGCCAGCGTGTACGAGTTCGGGCGCGGCGGTGCTCTCAAAAGCCC
GGTGCTGGCCTACGCCTGGTACGCGGCAGTGCCCGCCAACGGCTCGTCGC
ACGCC
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