mRNA_P-wetherbeei_contig18087.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18087.1.1
Unique NamemRNA_P-wetherbeei_contig18087.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18087.1.1 vs. uniprot
Match: A0A521YWC9_9PROT (30S ribosomal protein S18 n=5 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521YWC9_9PROT)

HSP 1 Score: 133 bits (334), Expect = 4.520e-39
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 FRRRKFCRFTAEKAEWVDYKEVDVLKDFVNENGKIIPARITGTTAGFQRQLSVAIKRARFLALLPYTDLH 210
            FRRRKFCRFTAEK EW+DYK+VDVLKDFVNE GKIIPARITGT AG+QRQLS AIKRARFLALLPYTDLH
Sbjct:   28 FRRRKFCRFTAEKVEWIDYKDVDVLKDFVNETGKIIPARITGTAAGYQRQLSDAIKRARFLALLPYTDLH 97
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BLAST of mRNA_P-wetherbeei_contig18087.1.1 vs. uniprot
Match: A0A1F3YQU8_9PROT (30S ribosomal protein S18 n=5 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F3YQU8_9PROT)

HSP 1 Score: 132 bits (333), Expect = 6.230e-39
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 FRRRKFCRFTAEKAEWVDYKEVDVLKDFVNENGKIIPARITGTTAGFQRQLSVAIKRARFLALLPYTDLH 210
            FRRRKFCRFTAEK EWVDYK +D+LKDF+NENG+IIPARITGT+AG+QRQLS AIKRARFLAL+PYTDLH
Sbjct:   27 FRRRKFCRFTAEKIEWVDYKAIDILKDFINENGRIIPARITGTSAGYQRQLSTAIKRARFLALMPYTDLH 96
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BLAST of mRNA_P-wetherbeei_contig18087.1.1 vs. uniprot
Match: A0A537BVP2_9PROT (30S ribosomal protein S18 n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BVP2_9PROT)

HSP 1 Score: 131 bits (330), Expect = 8.640e-39
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 FRRRKFCRFTAEKAEWVDYKEVDVLKDFVNENGKIIPARITGTTAGFQRQLSVAIKRARFLALLPYTDLH 210
            FRRRKFCRFTAEK EW+DYK+V+VLKDF+NE GKIIPARITGT AG+QRQLS AIKRARFLALLPYTDLH
Sbjct:    2 FRRRKFCRFTAEKVEWIDYKDVEVLKDFINETGKIIPARITGTAAGYQRQLSEAIKRARFLALLPYTDLH 71
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BLAST of mRNA_P-wetherbeei_contig18087.1.1 vs. uniprot
Match: A0A149VVK6_9PROT (30S ribosomal protein S18 n=3 Tax=unclassified Ferrovum TaxID=2609466 RepID=A0A149VVK6_9PROT)

HSP 1 Score: 131 bits (329), Expect = 2.130e-38
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 FRRRKFCRFTAEKAEWVDYKEVDVLKDFVNENGKIIPARITGTTAGFQRQLSVAIKRARFLALLPYTDLH 210
            FRRRKFCRFTAEK EWVDYK+VD+LKDF+NENGKIIPARITGT A +QRQL VA+KRARFLALLPYTDLH
Sbjct:   21 FRRRKFCRFTAEKIEWVDYKDVDLLKDFINENGKIIPARITGTKARYQRQLGVAVKRARFLALLPYTDLH 90
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BLAST of mRNA_P-wetherbeei_contig18087.1.1 vs. uniprot
Match: UPI0019A27299 (30S ribosomal protein S18 n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019A27299)

HSP 1 Score: 131 bits (329), Expect = 2.540e-38
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 FRRRKFCRFTAEKAEWVDYKEVDVLKDFVNENGKIIPARITGTTAGFQRQLSVAIKRARFLALLPYTDLH 210
            FRRRKFCRFTAEK EWVDYK +D+LKDF+NENG+IIPARITGT+AG+QRQLS AIKRARFLAL+P+TDLH
Sbjct:   27 FRRRKFCRFTAEKIEWVDYKAIDILKDFINENGRIIPARITGTSAGYQRQLSTAIKRARFLALMPFTDLH 96
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BLAST of mRNA_P-wetherbeei_contig18087.1.1 vs. uniprot
Match: A0A1F4F2F6_9PROT (30S ribosomal protein S18 n=5 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4F2F6_9PROT)

HSP 1 Score: 130 bits (328), Expect = 3.950e-38
Identity = 59/70 (84.29%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 FRRRKFCRFTAEKAEWVDYKEVDVLKDFVNENGKIIPARITGTTAGFQRQLSVAIKRARFLALLPYTDLH 210
            FRRRKFCRFTAEKAEW+DYK+++VLKDF+NE GKIIPARITGT++G+QRQLS AIKRARFLAL+PYTDLH
Sbjct:   30 FRRRKFCRFTAEKAEWIDYKDIEVLKDFINETGKIIPARITGTSSGYQRQLSEAIKRARFLALVPYTDLH 99
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BLAST of mRNA_P-wetherbeei_contig18087.1.1 vs. uniprot
Match: A0A0S8AYD1_9PROT (30S ribosomal protein S18 n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8AYD1_9PROT)

HSP 1 Score: 130 bits (327), Expect = 5.130e-38
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 FRRRKFCRFTAEKAEWVDYKEVDVLKDFVNENGKIIPARITGTTAGFQRQLSVAIKRARFLALLPYTDLH 210
            FRRRKFCRFTAEK EW+DYK++D L+DF+NE GKIIPARITGT+AG+QRQLS AIKRARFLALLPYTDLH
Sbjct:   27 FRRRKFCRFTAEKVEWIDYKDLDTLRDFINETGKIIPARITGTSAGYQRQLSTAIKRARFLALLPYTDLH 96
[Close]
BLAST of mRNA_P-wetherbeei_contig18087.1.1 vs. uniprot
Match: A0A1F4C7V3_9PROT (30S ribosomal protein S18 n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4C7V3_9PROT)

HSP 1 Score: 130 bits (327), Expect = 5.440e-38
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 FRRRKFCRFTAEKAEWVDYKEVDVLKDFVNENGKIIPARITGTTAGFQRQLSVAIKRARFLALLPYTDLH 210
            F+RRKFCRFTAEK EWVDYK++++LKDFVNENG+IIPARITGT AG+QRQLS AIKRAR+LALLPYTDLH
Sbjct:   29 FKRRKFCRFTAEKIEWVDYKDIEILKDFVNENGRIIPARITGTKAGYQRQLSTAIKRARYLALLPYTDLH 98
[Close]
BLAST of mRNA_P-wetherbeei_contig18087.1.1 vs. uniprot
Match: A0A1F4AYY1_9PROT (30S ribosomal protein S18 n=6 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4AYY1_9PROT)

HSP 1 Score: 129 bits (324), Expect = 1.810e-37
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 FRRRKFCRFTAEKAEWVDYKEVDVLKDFVNENGKIIPARITGTTAGFQRQLSVAIKRARFLALLPYTDLH 210
            F+RRKFCRFT EK EW+DYK+VD+LKDF+NENGKIIPARITGT  G+QRQLS AIKRARFLALLPYTDLH
Sbjct:   34 FKRRKFCRFTVEKIEWIDYKDVDLLKDFINENGKIIPARITGTKTGYQRQLSEAIKRARFLALLPYTDLH 103
[Close]
BLAST of mRNA_P-wetherbeei_contig18087.1.1 vs. uniprot
Match: A0A6L9KXK7_9PROT (30S ribosomal protein S18 n=1 Tax=Ferrovum sp. TaxID=2609467 RepID=A0A6L9KXK7_9PROT)

HSP 1 Score: 129 bits (323), Expect = 1.850e-37
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 FRRRKFCRFTAEKAEWVDYKEVDVLKDFVNENGKIIPARITGTTAGFQRQLSVAIKRARFLALLPYTDLH 210
            FRRRKFCRFT EK EWVDYK+VD+LKDF+NENGKIIPARITGT A +QRQLS A+KRARFLALLPYTDLH
Sbjct:   23 FRRRKFCRFTVEKIEWVDYKDVDLLKDFINENGKIIPARITGTKAIYQRQLSTAVKRARFLALLPYTDLH 92
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18087.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521YWC9_9PROT4.520e-3990.0030S ribosomal protein S18 n=5 Tax=unclassified Bet... [more]
A0A1F3YQU8_9PROT6.230e-3985.7130S ribosomal protein S18 n=5 Tax=unclassified Bet... [more]
A0A537BVP2_9PROT8.640e-3987.1430S ribosomal protein S18 n=1 Tax=Betaproteobacter... [more]
A0A149VVK6_9PROT2.130e-3887.1430S ribosomal protein S18 n=3 Tax=unclassified Fer... [more]
UPI0019A272992.540e-3884.2930S ribosomal protein S18 n=1 Tax=Candidatus Parcu... [more]
A0A1F4F2F6_9PROT3.950e-3884.2930S ribosomal protein S18 n=5 Tax=unclassified Bet... [more]
A0A0S8AYD1_9PROT5.130e-3884.2930S ribosomal protein S18 n=1 Tax=Betaproteobacter... [more]
A0A1F4C7V3_9PROT5.440e-3884.2930S ribosomal protein S18 n=2 Tax=unclassified Bet... [more]
A0A1F4AYY1_9PROT1.810e-3784.2930S ribosomal protein S18 n=6 Tax=unclassified Bet... [more]
A0A6L9KXK7_9PROT1.850e-3785.7130S ribosomal protein S18 n=1 Tax=Ferrovum sp. Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18087contigP-wetherbeei_contig18087:1..213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1051985.l11_08060
Preferred namerpsR
PFAMsRibosomal_S18
Model size213
Max annot lvl206351|Neisseriales
KEGG koko:K02963
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.84e-36
EggNOG OGsCOG0238@1|root,COG0238@2|Bacteria,1MZ8U@1224|Proteobacteria,2VTWT@28216|Betaproteobacteria,2KRJN@206351|Neisseriales
DescriptionBinds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
Cds size213
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186135.9255655-CDS-P-wetherbeei_contig18087:0..2131683186135.9255655-CDS-P-wetherbeei_contig18087:0..213Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18087 1..213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18087.1.1prot_P-wetherbeei_contig18087.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18087 1..213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18087.1.1

>prot_P-wetherbeei_contig18087.1.1 ID=prot_P-wetherbeei_contig18087.1.1|Name=mRNA_P-wetherbeei_contig18087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
FRRRKFCRFTAEKAEWVDYKEVDVLKDFVNENGKIIPARITGTTAGFQRQ
LSVAIKRARFLALLPYTDLH*
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mRNA from alignment at P-wetherbeei_contig18087:1..213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18087.1.1 ID=mRNA_P-wetherbeei_contig18087.1.1|Name=mRNA_P-wetherbeei_contig18087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig18087:1..213+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCGCCGCCGCAAGTTCTGCCGCTTCACCGCCGAGAAGGCTGAGTGGGT
CGACTACAAGGAAGTCGACGTGCTGAAGGATTTCGTCAACGAGAACGGCA
AGATCATCCCGGCGCGCATCACCGGGACGACGGCGGGCTTCCAGCGCCAG
CTGTCGGTCGCGATCAAGCGCGCGCGATTCCTCGCGTTGCTGCCCTACAC
CGACCTGCACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18087:1..213+

>mRNA_P-wetherbeei_contig18087.1.1 ID=mRNA_P-wetherbeei_contig18087.1.1|Name=mRNA_P-wetherbeei_contig18087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig18087:1..213+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCGCCGCCGCAAGTTCTGCCGCTTCACCGCCGAGAAGGCTGAGTGGGT
CGACTACAAGGAAGTCGACGTGCTGAAGGATTTCGTCAACGAGAACGGCA
AGATCATCCCGGCGCGCATCACCGGGACGACGGCGGGCTTCCAGCGCCAG
CTGTCGGTCGCGATCAAGCGCGCGCGATTCCTCGCGTTGCTGCCCTACAC
CGACCTGCACTGA
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