mRNA_P-wetherbeei_contig18076.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18076.1.1
Unique NamemRNA_P-wetherbeei_contig18076.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18076.1.1 vs. uniprot
Match: A0A6M4GQT1_9PROT (Uncharacterized protein n=1 Tax=Usitatibacter rugosus TaxID=2732067 RepID=A0A6M4GQT1_9PROT)

HSP 1 Score: 199 bits (507), Expect = 1.140e-61
Identity = 89/141 (63.12%), Postives = 113/141 (80.14%), Query Frame = 1
Query:    1 LLSPELDFERLIMDSTNTVFCNFIVAKPSFWRAWLAKCETLFQVAEDGTTDLANRLNASTGHDGGGVPTKVFVIERIASLMLATESHWKAKACNPLSLPWSNAPTAKFRLEMAFLDALKIAYATQGHPQYLEAFHGLRGVV 423
            L  P +DF+ L+MDS+NTVFCN+ VAK +FWR WL +CE +F++AE+GT+DLA RLN +T HD GGVPTKVFVIER+ASLML+ +  W A+A NPLSLPWS +P A+F +EMA LDALK+AY+ QGHP+YL AF  LR  +
Sbjct:  124 LAEPTVDFDSLVMDSSNTVFCNYFVAKGAFWREWLERCERIFRIAEEGTSDLARRLNEATRHDEGGVPTKVFVIERVASLMLSVKGRWNARARNPLSLPWSTSPIARFPMEMAVLDALKVAYSAQGHPEYLAAFAQLRQAI 264          
BLAST of mRNA_P-wetherbeei_contig18076.1.1 vs. uniprot
Match: A0A372K690_9BURK (Uncharacterized protein n=1 Tax=Paraburkholderia sp. DHOC27 TaxID=2303330 RepID=A0A372K690_9BURK)

HSP 1 Score: 142 bits (358), Expect = 3.810e-39
Identity = 66/142 (46.48%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 LLSPELDFERLIMDSTNTVFCNFIVAKPSFWRAWLAKCETLFQVAEDGTTDLANRLNASTGHDGGGVPTKVFVIERIASLMLATESHWKAKACNPLSLPWSNAPTAKFRLEMAFLDALKIAYATQGHPQYLEAFHGLRGVVS 426
            L++P+LD     M S  TVFCN+++AKP+FW+ WL KCE +F  AE   T+LA RLNA   ++    P KVFVIERI SL+L T+  WK +  NP++LP ++ P ++F  ++  LDALK A    G PQY+ A+  LR  V+
Sbjct:  123 LIAPDLDMTATFMSSVQTVFCNYLIAKPAFWQEWLQKCEVIFNAAEARDTELALRLNAEVKYEQQRAPAKVFVIERIPSLILGTQRQWKVRNFNPMTLPIASEPLSRFGADLVALDALKFAANATGFPQYVTAYLQLRSAVN 264          
BLAST of mRNA_P-wetherbeei_contig18076.1.1 vs. uniprot
Match: Q13SR9_PARXL (Uncharacterized protein n=1 Tax=Paraburkholderia xenovorans (strain LB400) TaxID=266265 RepID=Q13SR9_PARXL)

HSP 1 Score: 141 bits (356), Expect = 6.370e-39
Identity = 65/138 (47.10%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    1 LLSPELDFERLIMDSTNTVFCNFIVAKPSFWRAWLAKCETLFQVAEDGTTDLANRLNASTGHDGGGVPTKVFVIERIASLMLATESHWKAKACNPLSLPWSNAPTAKFRLEMAFLDALKIAYATQGHPQYLEAFHGLR 414
            LL P +D + L+MDSTNTVFCN+ +AKP FWR WL+K E +FQ+AE   T  A  LN +T H  G    KVFVIER+ SL+LATE  W+ K+ NP+ LP +     +   ++  LDALK+A    G  +Y++ F  L+
Sbjct:  125 LLVPGIDLDTLVMDSTNTVFCNYFLAKPPFWRHWLSKAERIFQIAEQSNTPFAQALNQTTNHSSGPTAVKVFVIERLLSLILATEPQWRVKSFNPMCLPLNYPGADRIGEQLIMLDALKMAAVATGRSEYMQVFASLK 262          
BLAST of mRNA_P-wetherbeei_contig18076.1.1 vs. uniprot
Match: UPI001F1C0702 (hypothetical protein n=1 Tax=Paraburkholderia sp. HP33-1 TaxID=2883243 RepID=UPI001F1C0702)

HSP 1 Score: 138 bits (347), Expect = 1.610e-37
Identity = 65/142 (45.77%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    1 LLSPELDFERLIMDSTNTVFCNFIVAKPSFWRAWLAKCETLFQVAEDGTTDLANRLNASTGHDGGGVPTKVFVIERIASLMLATESHWKAKACNPLSLPWSNAPTAKFRLEMAFLDALKIAYATQGHPQYLEAFHGLRGVVS 426
            L++P+      +M S  TV+CNF+VAKP+FW+ WL +CE +F VAE G  DLA RLN    ++    P K+FVIER+ASL+LAT+  WK +  NP++LP ++AP ++F  E+  LDALK A    G  +Y+ AF  LR  ++
Sbjct:  123 LIAPDAKVGGTVMSSVQTVYCNFLVAKPAFWQQWLQRCEVIFNVAESGEGDLAKRLNEDVKYEQQFAPAKIFVIERVASLILATQPSWKVRNYNPMTLPVASAPLSRFGPELVALDALKHAANATGFGEYVTAFVQLRNSLN 264          
BLAST of mRNA_P-wetherbeei_contig18076.1.1 vs. uniprot
Match: UPI001B05E0EC (hypothetical protein n=1 Tax=Paraburkholderia haematera TaxID=2793077 RepID=UPI001B05E0EC)

HSP 1 Score: 137 bits (346), Expect = 1.960e-37
Identity = 65/141 (46.10%), Postives = 88/141 (62.41%), Query Frame = 1
Query:    1 LLSPELDFERLIMDSTNTVFCNFIVAKPSFWRAWLAKCETLFQVAEDGTTDLANRLNASTGHDGGGVPTKVFVIERIASLMLATESHWKAKACNPLSLPWSNAPTAKFRLEMAFLDALKIAYATQGHPQYLEAFHGLRGVV 423
            LL+P++D +  + DS NT+FCN+ +AKP FWR W  K E +F  AE+  + L   LN +  H  G  P KVFVIER+ SL+LATES W  +  NP+SLP       +F  ++A LDALK+A AT G  +Y+ AF  LR  +
Sbjct:  124 LLAPDVDLDTFVTDSRNTIFCNYFLAKPRFWRYWFDKAEMIFNSAEENNSPLGLGLNQTINHTSGPTPIKVFVIERLVSLLLATESRWSVQLFNPMSLPVIYLGADRFGEQLAMLDALKMAAATTGRSEYMTAFATLRAQI 264          
BLAST of mRNA_P-wetherbeei_contig18076.1.1 vs. uniprot
Match: UPI0005B9EEBF (hypothetical protein n=1 Tax=Paraburkholderia acidipaludis TaxID=660537 RepID=UPI0005B9EEBF)

HSP 1 Score: 136 bits (342), Expect = 9.040e-37
Identity = 62/142 (43.66%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    1 LLSPELDFERLIMDSTNTVFCNFIVAKPSFWRAWLAKCETLFQVAEDGTTDLANRLNASTGHDGGGVPTKVFVIERIASLMLATESHWKAKACNPLSLPWSNAPTAKFRLEMAFLDALKIAYATQGHPQYLEAFHGLRGVVS 426
            L++P L+    +M S  +VFCN++VA+P+FW+ WLA CE +F VAE G T+L  +LNA   ++    P K F+IER+ASL+++T+SHWK +A NP++LP ++    KF  ++  LDALK      G PQY  A+   R V++
Sbjct:  123 LVAPGLNVGETVMSSVQSVFCNYLVARPAFWQRWLATCERIFAVAEAGDTELGQQLNADVRYENQRGPAKTFIIERMASLLISTQSHWKVRAYNPVTLPIASKALGKFGEDLLVLDALKFMARETGSPQYFVAYLSRRHVLN 264          
BLAST of mRNA_P-wetherbeei_contig18076.1.1 vs. uniprot
Match: UPI00034A9669 (hypothetical protein n=3 Tax=Paraburkholderia kururiensis TaxID=984307 RepID=UPI00034A9669)

HSP 1 Score: 136 bits (342), Expect = 1.300e-36
Identity = 69/140 (49.29%), Postives = 86/140 (61.43%), Query Frame = 1
Query:    4 LSPELDFERLIMDSTNTVFCNFIVAKPSFWRAWLAKCETLFQVAEDGTTDLANRLNASTGHDGGGVPTKVFVIERIASLMLATESHWKAKACNPLSLPWSNAPTAKFRLEMAFLDALKIAYATQGHPQYLEAFHGLRGVV 423
            ++P  D   L MDS +++FCN+ VA P+FWR WL  CE L  VAE G  +LA  LN    +    VP KVFVIERIASL+LATE HW+A   +PLSLP S +    +  E+A LDALK+A    G   YLE F   RG +
Sbjct:  135 VAPGFDPHTLAMDSRSSIFCNYFVATPAFWRRWLLACEMLLGVAEGGNGELAALLNGPVAYGSTMVPAKVFVIERIASLLLATEPHWRAARFDPLSLPMSGSIVCPYPGELAMLDALKLAAIETGDAGYLEVFERTRGAL 274          
BLAST of mRNA_P-wetherbeei_contig18076.1.1 vs. uniprot
Match: A0A372K798_9BURK (Uncharacterized protein n=1 Tax=Paraburkholderia sp. DHOC27 TaxID=2303330 RepID=A0A372K798_9BURK)

HSP 1 Score: 135 bits (341), Expect = 1.340e-36
Identity = 62/134 (46.27%), Postives = 88/134 (65.67%), Query Frame = 1
Query:    1 LLSPELDFERLIMDSTNTVFCNFIVAKPSFWRAWLAKCETLFQVAEDGTTDLANRLNASTGHDGGGVPTKVFVIERIASLMLATESHWKAKACNPLSLPWSNAPTAKFRLEMAFLDALKIAYATQGHPQYLEAF 402
            LL+P+++ E ++MDS +TVFCN+ VAKP FWR WL++ E +F++AE+  + LA   N++  H  G    KVFVIERI SL+LATE HW+ +A NPL+LP       +    +  LDALK+A    G  +Y+ AF
Sbjct:  126 LLAPQVNLEAMVMDSRHTVFCNYFVAKPRFWRHWLSRAEVVFKIAEENRSPLAEAFNSTIDHSSGATAIKVFVIERIVSLLLATERHWQVRAFNPLALPLLYPGAERVGETLLALDALKVAMIETGRSEYMAAF 259          
BLAST of mRNA_P-wetherbeei_contig18076.1.1 vs. uniprot
Match: A4SWH3_POLAQ (Uncharacterized protein n=5 Tax=Polynucleobacter asymbioticus TaxID=576611 RepID=A4SWH3_POLAQ)

HSP 1 Score: 134 bits (338), Expect = 3.420e-36
Identity = 70/142 (49.30%), Postives = 91/142 (64.08%), Query Frame = 1
Query:    1 LLSPELDFERLIMDSTNTVFCNFIVAKPSFWRAWLAKCETLFQVAEDGTTDLANRLNA-STGHDGGGVPTKVFVIERIASLMLATESHWKAKACNPLSLPWSNAPTAKFRLEMAFLDALKIAYATQGHPQYLEAFHGLRGVV 423
            +L+P ++   L+M S N +FCNF VAKP+FW+AWL  CE ++  AE   + +A+ LN+ + GHD    P K FVIERIASLMLAT   WK +A N L LP+S+AP A  R  +  LDALKIAYA Q   +YL     L  +V
Sbjct:  125 VLNPYININELVMHSGNNIFCNFFVAKPAFWKAWLENCELIWAEAEFNMSSIAHGLNSLAQGHDSPA-PIKTFVIERIASLMLATNDSWKVRAYNSLDLPFSSAPIANERAALIQLDALKIAYADQKRAEYLSLHKTLGDLV 265          
BLAST of mRNA_P-wetherbeei_contig18076.1.1 vs. uniprot
Match: A0A1N7SQB1_9BURK (Uncharacterized protein n=2 Tax=Paraburkholderia TaxID=1822464 RepID=A0A1N7SQB1_9BURK)

HSP 1 Score: 133 bits (334), Expect = 1.420e-35
Identity = 59/138 (42.75%), Postives = 85/138 (61.59%), Query Frame = 1
Query:    4 LSPELDFERLIMDSTNTVFCNFIVAKPSFWRAWLAKCETLFQVAEDGTTDLANRLNASTGHDGGGVPTKVFVIERIASLMLATESHWKAKACNPLSLPWSNAPTAKFRLEMAFLDALKIAYATQGHPQYLEAFHGLRG 417
            + P +D   L+M S  TVFCN+++AKP+FW  W+  C+ LF +AE G  +LA  LNAS  ++    P KVF+IER+ASL+L T+  W+ ++ NPL++P S +P      E+  LD LK A    G P+YL  F   +G
Sbjct:  124 IMPSVDINTLVMTSKETVFCNYLIAKPAFWAEWIGLCDQLFAIAESGVGELAEGLNASVSYEQDSAPAKVFLIERMASLLLCTQPQWRVRSYNPLTMPTSASPIRLLGAELLMLDGLKFASRQTGLPEYLAVFRQRQG 261          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18076.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6M4GQT1_9PROT1.140e-6163.12Uncharacterized protein n=1 Tax=Usitatibacter rugo... [more]
A0A372K690_9BURK3.810e-3946.48Uncharacterized protein n=1 Tax=Paraburkholderia s... [more]
Q13SR9_PARXL6.370e-3947.10Uncharacterized protein n=1 Tax=Paraburkholderia x... [more]
UPI001F1C07021.610e-3745.77hypothetical protein n=1 Tax=Paraburkholderia sp. ... [more]
UPI001B05E0EC1.960e-3746.10hypothetical protein n=1 Tax=Paraburkholderia haem... [more]
UPI0005B9EEBF9.040e-3743.66hypothetical protein n=1 Tax=Paraburkholderia acid... [more]
UPI00034A96691.300e-3649.29hypothetical protein n=3 Tax=Paraburkholderia kuru... [more]
A0A372K798_9BURK1.340e-3646.27Uncharacterized protein n=1 Tax=Paraburkholderia s... [more]
A4SWH3_POLAQ3.420e-3649.30Uncharacterized protein n=5 Tax=Polynucleobacter a... [more]
A0A1N7SQB1_9BURK1.420e-3542.75Uncharacterized protein n=2 Tax=Paraburkholderia T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18076contigP-wetherbeei_contig18076:3..455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog266265.Bxe_A0057
Model size453
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.04e-39
EggNOG OGsCOG5010@1|root,COG5010@2|Bacteria,1REGZ@1224|Proteobacteria,2VRQ6@28216|Betaproteobacteria,1K6YD@119060|Burkholderiaceae
DescriptionCOG0457 FOG TPR repeat
Cds size453
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186135.6530788-CDS-P-wetherbeei_contig18076:2..4551683186135.6530788-CDS-P-wetherbeei_contig18076:2..455Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18076 3..455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18076.1.1prot_P-wetherbeei_contig18076.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18076 3..455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18076.1.1

>prot_P-wetherbeei_contig18076.1.1 ID=prot_P-wetherbeei_contig18076.1.1|Name=mRNA_P-wetherbeei_contig18076.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
LLSPELDFERLIMDSTNTVFCNFIVAKPSFWRAWLAKCETLFQVAEDGTT
DLANRLNASTGHDGGGVPTKVFVIERIASLMLATESHWKAKACNPLSLPW
SNAPTAKFRLEMAFLDALKIAYATQGHPQYLEAFHGLRGVVSGWMQPPKA
*
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mRNA from alignment at P-wetherbeei_contig18076:3..455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18076.1.1 ID=mRNA_P-wetherbeei_contig18076.1.1|Name=mRNA_P-wetherbeei_contig18076.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig18076:3..455+ (Phaeothamnion wetherbeei SAG_119_79)
CTCTTGTCGCCGGAACTCGACTTCGAGCGGCTCATCATGGACTCGACGAA TACCGTGTTCTGCAACTTCATCGTGGCGAAGCCGTCCTTCTGGCGGGCGT GGCTCGCAAAGTGTGAGACCCTGTTTCAGGTTGCCGAGGATGGGACGACG GACCTCGCGAATCGGCTGAACGCCAGCACCGGCCACGACGGAGGGGGCGT ACCGACCAAGGTCTTCGTCATCGAGCGGATTGCGTCCCTGATGCTCGCGA CGGAATCGCACTGGAAGGCAAAGGCCTGCAACCCGCTTTCGCTGCCGTGG TCGAACGCGCCAACGGCGAAGTTTCGGCTCGAGATGGCTTTCCTCGATGC GCTGAAGATCGCCTACGCGACCCAGGGCCACCCGCAGTACCTCGAGGCAT TCCACGGCCTGCGCGGGGTGGTCAGCGGATGGATGCAGCCGCCGAAGGCA TGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18076:3..455+

>mRNA_P-wetherbeei_contig18076.1.1 ID=mRNA_P-wetherbeei_contig18076.1.1|Name=mRNA_P-wetherbeei_contig18076.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig18076:3..455+ (Phaeothamnion wetherbeei SAG_119_79)
CTCTTGTCGCCGGAACTCGACTTCGAGCGGCTCATCATGGACTCGACGAA
TACCGTGTTCTGCAACTTCATCGTGGCGAAGCCGTCCTTCTGGCGGGCGT
GGCTCGCAAAGTGTGAGACCCTGTTTCAGGTTGCCGAGGATGGGACGACG
GACCTCGCGAATCGGCTGAACGCCAGCACCGGCCACGACGGAGGGGGCGT
ACCGACCAAGGTCTTCGTCATCGAGCGGATTGCGTCCCTGATGCTCGCGA
CGGAATCGCACTGGAAGGCAAAGGCCTGCAACCCGCTTTCGCTGCCGTGG
TCGAACGCGCCAACGGCGAAGTTTCGGCTCGAGATGGCTTTCCTCGATGC
GCTGAAGATCGCCTACGCGACCCAGGGCCACCCGCAGTACCTCGAGGCAT
TCCACGGCCTGCGCGGGGTGGTCAGCGGATGGATGCAGCCGCCGAAGGCA
TGA
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