mRNA_P-wetherbeei_contig1807.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1807.2.1
Unique NamemRNA_P-wetherbeei_contig1807.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1807.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1807contigP-wetherbeei_contig1807:3918..5332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1415
Hectar predicted targeting categorysignal anchor
Exons1
Cds size705
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186135.5077174-UTR-P-wetherbeei_contig1807:3917..42581683186135.5077174-UTR-P-wetherbeei_contig1807:3917..4258Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1807 3918..4258 +
1683186135.5319617-UTR-P-wetherbeei_contig1807:4963..53321683186135.5319617-UTR-P-wetherbeei_contig1807:4963..5332Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1807 4964..5332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186135.522796-CDS-P-wetherbeei_contig1807:4258..49631683186135.522796-CDS-P-wetherbeei_contig1807:4258..4963Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1807 4259..4963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1807.2.1prot_P-wetherbeei_contig1807.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1807 4259..4963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1807.2.1

>prot_P-wetherbeei_contig1807.2.1 ID=prot_P-wetherbeei_contig1807.2.1|Name=mRNA_P-wetherbeei_contig1807.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=235bp
MSSVQAQEGPRATVFEEGGPSTTSAKYESELESWGAFFATFFKGAVSPAF
LQQGTFSGRASLLLAFLALLLAWGSTLAITEGYRKGSCNTKYVVLPNEAA
SSGDPVDVAPPALVELVQQTGVTILARSLIAYSNETTFVQLGASYWAPLA
VTCGCDACNLLSCSATVPLSVTYRQCLPYSQAFALAFAFFTNVLVASAVV
VMTLAALCEPSRRAVVEGSTALAAAFNVDARPPS*
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mRNA from alignment at P-wetherbeei_contig1807:3918..5332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1807.2.1 ID=mRNA_P-wetherbeei_contig1807.2.1|Name=mRNA_P-wetherbeei_contig1807.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1415bp|location=Sequence derived from alignment at P-wetherbeei_contig1807:3918..5332+ (Phaeothamnion wetherbeei SAG_119_79)
AGTGGTCCCGTCCACTATACGCAACCAGCGGTGCGCGCGTGAAGTCTCGA
TACTGCAATCGGCCAGAGCGGAAAGAGGAAGATTTTTCGCACAGAAGGCT
TTTCGAGCTCCACAACAGGGTGCTTCCCGTATTCTCTGAGACCAACCATC
GAGGCTCAAGCCACGAGCCCTTCGTCGAGAGTGGTGCTCCGGGGTGCCGA
ACATCGCTCGCTGTCTTCGAAACGTTTGGGAAAAGAGTGTGGCCGCCTCT
CCCTTCCAGTCTGTTCCCGAGCAGCCTCGAGTGGACCACCGCTCTCTTCA
GCAAGTCCAAGCGCGCGTGCATCCCGCCATTCAAAAATAAGATGTCGTCT
GTCCAGGCTCAAGAAGGGCCTCGCGCAACTGTGTTTGAAGAGGGTGGTCC
AAGCACCACCTCGGCGAAGTACGAGTCCGAGTTGGAGTCCTGGGGTGCGT
TCTTCGCAACGTTTTTCAAGGGAGCGGTGAGCCCGGCTTTCCTCCAGCAA
GGCACCTTTTCGGGGAGGGCGAGCCTCCTCCTTGCCTTCCTCGCGCTGCT
GCTGGCGTGGGGCAGCACCCTCGCCATCACCGAAGGCTACAGAAAGGGGA
GCTGCAACACAAAGTACGTCGTCCTTCCCAACGAGGCTGCTTCTTCAGGC
GACCCGGTCGACGTCGCGCCGCCGGCGCTCGTCGAACTTGTGCAACAGAC
CGGCGTCACCATACTCGCGCGCTCGCTCATCGCCTATAGCAACGAGACCA
CGTTCGTGCAACTTGGCGCAAGCTACTGGGCGCCGCTGGCCGTCACGTGC
GGCTGCGACGCTTGCAACCTGCTGAGCTGCAGCGCGACGGTGCCGCTGTC
TGTGACGTATCGTCAGTGCCTACCCTACTCGCAAGCGTTCGCGCTTGCCT
TCGCCTTCTTCACCAATGTGCTGGTTGCGTCAGCCGTCGTGGTGATGACG
CTCGCGGCGCTCTGCGAACCGAGCCGCCGCGCCGTCGTGGAAGGGTCCAC
CGCCTTGGCCGCCGCCTTCAACGTCGACGCCCGGCCCCCTTCCTAGTGAA
AGCCCGGCAGAGGCAGCGCGGTTGCTTGGGGATGAGGATTTTTGGTGTCT
CTGGCGGGTTGCGGCTGGCTGCCAGTATCGGCGAATTTTGCCTACCCATG
ATGTATGCGGCACTACTGTATCAAGGTAGACTGTCGGCTGAGAAACTTCA
AGAACGAGCGGCGGCTATAGCGCCTCACGGAAGCCGCCAACAACAGAGGC
AAGCTGGGAGACACCAAGAATGTGGGGAAAACTGAAATCACACGGCGTCG
GTGAGGGTTGTACGACTTATGGTTTGCTTACCTTTCCATTCATGAGATGT
ATCGGACTCGCGGTTCATGTAGAAAAGTAGTCAAACGAACTAATGTTGCA
AATCTCTCTTCACAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1807:3918..5332+

>mRNA_P-wetherbeei_contig1807.2.1 ID=mRNA_P-wetherbeei_contig1807.2.1|Name=mRNA_P-wetherbeei_contig1807.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=705bp|location=Sequence derived from alignment at P-wetherbeei_contig1807:3918..5332+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTCTGTCCAGGCTCAAGAAGGGCCTCGCGCAACTGTGTTTGAAGA
GGGTGGTCCAAGCACCACCTCGGCGAAGTACGAGTCCGAGTTGGAGTCCT
GGGGTGCGTTCTTCGCAACGTTTTTCAAGGGAGCGGTGAGCCCGGCTTTC
CTCCAGCAAGGCACCTTTTCGGGGAGGGCGAGCCTCCTCCTTGCCTTCCT
CGCGCTGCTGCTGGCGTGGGGCAGCACCCTCGCCATCACCGAAGGCTACA
GAAAGGGGAGCTGCAACACAAAGTACGTCGTCCTTCCCAACGAGGCTGCT
TCTTCAGGCGACCCGGTCGACGTCGCGCCGCCGGCGCTCGTCGAACTTGT
GCAACAGACCGGCGTCACCATACTCGCGCGCTCGCTCATCGCCTATAGCA
ACGAGACCACGTTCGTGCAACTTGGCGCAAGCTACTGGGCGCCGCTGGCC
GTCACGTGCGGCTGCGACGCTTGCAACCTGCTGAGCTGCAGCGCGACGGT
GCCGCTGTCTGTGACGTATCGTCAGTGCCTACCCTACTCGCAAGCGTTCG
CGCTTGCCTTCGCCTTCTTCACCAATGTGCTGGTTGCGTCAGCCGTCGTG
GTGATGACGCTCGCGGCGCTCTGCGAACCGAGCCGCCGCGCCGTCGTGGA
AGGGTCCACCGCCTTGGCCGCCGCCTTCAACGTCGACGCCCGGCCCCCTT
CCTAG
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