mRNA_P-wetherbeei_contig18066.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18066.1.1
Unique NamemRNA_P-wetherbeei_contig18066.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18066.1.1 vs. uniprot
Match: A0A182GEU4_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GEU4_AEDAL)

HSP 1 Score: 95.1 bits (235), Expect = 3.340e-21
Identity = 60/135 (44.44%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    1 LVGYSDANLAGCLDSGRSTTGGLFLLAGGVAAFSSRLQDSAARSAMESEYKALFDAAQKEEQLRTLLAHLGLELTAPTVIHEDNTAVLAVPMAAGHTRQSRHIRTRYHFTRELVAAGVIAMEQVSTAGQLAYGLT 405
            LVGYSDA+ AG  +  +S +G LF L G   +++SR Q     S ME+EY AL +AAQ+   LR LL  L  E T PTVI EDN + L   +     ++S+H+ TRYH+TRELV    I +    T   LA  LT
Sbjct:   96 LVGYSDADWAGDANDRKSCSGFLFGLGGATVSWTSRKQTCVTMSTMEAEYVALSEAAQEAVWLRGLLKELNEEQTKPTVIFEDNRSCLDFAVLDQQRKRSKHVDTRYHYTRELVTQKQIELRYCPTDEMLADVLT 230          
BLAST of mRNA_P-wetherbeei_contig18066.1.1 vs. uniprot
Match: A0A182G3L3_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G3L3_AEDAL)

HSP 1 Score: 97.1 bits (240), Expect = 8.210e-21
Identity = 58/135 (42.96%), Postives = 80/135 (59.26%), Query Frame = 1
Query:    1 LVGYSDANLAGCLDSGRSTTGGLFLLAGGVAAFSSRLQDSAARSAMESEYKALFDAAQKEEQLRTLLAHLGLELTAPTVIHEDNTAVLAVPMAAGHTRQSRHIRTRYHFTRELVAAGVIAMEQVSTAGQLAYGLT 405
            LVGYSDA+ AG     RS +G +F + G   ++SSR Q   A S ME+EY AL +A+ +   LR+LL  L  E   PTV+ EDN + L       H ++++HI TRYH+TREL A+GVI +    +   +A  LT
Sbjct:  341 LVGYSDADWAGDSSDRRSCSGYVFRIGGATVSWSSRKQSCVATSTMEAEYVALSEASHEVVWLRSLLKELNEEQVKPTVVFEDNRSCLDFVALDQHKKRTKHIDTRYHYTRELSASGVIELRYCPSEEMVADVLT 475          
BLAST of mRNA_P-wetherbeei_contig18066.1.1 vs. uniprot
Match: UPI001C9BC1AB (secreted RxLR effector protein 161-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC1AB)

HSP 1 Score: 94.0 bits (232), Expect = 9.240e-21
Identity = 56/135 (41.48%), Postives = 79/135 (58.52%), Query Frame = 1
Query:    1 LVGYSDANLAGCLDSGRSTTGGLFLLAGGVAAFSSRLQDSAARSAMESEYKALFDAAQKEEQLRTLLAHLGLELTAPTVIHEDNTAVLAVPMAAGHTRQSRHIRTRYHFTRELVAAGVIAMEQVSTAGQLAYGLT 405
               YSDA+ AG +D+ RSTTG + L+AGG   +SS  Q   +RS  E+EY A  DA+Q+   LR LL  L ++L  PT +H DN + + +     H ++++HI  +YH+ RE V  G I +  V T  QLA  LT
Sbjct:  101 FTAYSDADFAGDVDTRRSTTGYITLMAGGPVIWSSHRQKCISRSTTEAEYVAASDASQEVTWLRILLQELCVDLKNPTPLHMDNQSAIRLTKNTEHHKKTKHIDIKYHYIRECVEHGAIKIIYVCTEEQLADILT 235          
BLAST of mRNA_P-wetherbeei_contig18066.1.1 vs. uniprot
Match: A0A182HCW7_AEDAL (Uncharacterized protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HCW7_AEDAL)

HSP 1 Score: 91.7 bits (226), Expect = 1.350e-20
Identity = 54/135 (40.00%), Postives = 76/135 (56.30%), Query Frame = 1
Query:    1 LVGYSDANLAGCLDSGRSTTGGLFLLAGGVAAFSSRLQDSAARSAMESEYKALFDAAQKEEQLRTLLAHLGLELTAPTVIHEDNTAVLAVPMAAGHTRQSRHIRTRYHFTRELVAAGVIAMEQVSTAGQLAYGLT 405
            LVGY DA+ AG     +S +G LF L G   +++SR Q S   S ME+EY AL +A Q+   LR LL  L ++    T+IHEDN   +         R+S+HI TRYH+T+E  A+G I +   ++   +A  LT
Sbjct:   17 LVGYCDADWAGDTSDRKSCSGYLFQLGGATVSWTSRKQTSVTTSTMEAEYVALSEATQQAIWLRRLLGELNVDQNCATIIHEDNKGCMDFVALDQQKRRSKHIDTRYHYTKERCASGEIELRYCASEDMIADVLT 151          
BLAST of mRNA_P-wetherbeei_contig18066.1.1 vs. uniprot
Match: A0A6S7HIQ4_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HIQ4_PARCT)

HSP 1 Score: 93.6 bits (231), Expect = 2.440e-20
Identity = 57/135 (42.22%), Postives = 80/135 (59.26%), Query Frame = 1
Query:    1 LVGYSDANLAGCLDSGRSTTGGLFLLAGGVAAFSSRLQDSAARSAMESEYKALFDAAQKEEQLRTLLAHLGLELTAPTVIHEDNTAVLAVPMAAGHTRQSRHIRTRYHFTRELVAAGVIAMEQVSTAGQLAYGLT 405
            L  YSDA+ AG LD   ST+G   ++A G  ++ S+ Q + A S  E+EY AL  A Q+   LR LL  +G  L   TVI+EDN A +++        +++HI TRYHF RE + +GVIA+E V T+  +A  LT
Sbjct:  136 LTVYSDADWAGDLDDRHSTSGNALIMASGAVSWLSKKQPTVAMSTAEAEYVALSFATQETIWLRQLLGDIGQPLAEATVIYEDNQAAISIAKNPVSHARTKHIDTRYHFIREELQSGVIALEYVPTSEMVADILT 270          
BLAST of mRNA_P-wetherbeei_contig18066.1.1 vs. uniprot
Match: A0A226DUK4_FOLCA (Copia protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DUK4_FOLCA)

HSP 1 Score: 95.1 bits (235), Expect = 5.250e-20
Identity = 60/136 (44.12%), Postives = 85/136 (62.50%), Query Frame = 1
Query:    1 LVGYSDANLAGCLDSGRSTTGGLFLLAGGVAAFSSRLQDSAARSAMESEYKALFDAAQKEEQLRTLLAHLGLELTAPTVIHEDN-TAVLAVPMAAGHTRQSRHIRTRYHFTRELVAAGVIAMEQVSTAGQLAYGLT 405
            L GY+DA+ A      +STTG +F+L   V ++SS+ Q   + S+MESEY +L   A++   LR  L  LG    +PT+IH DN +A+  V     H+R S+HI  RYH+TRELV+ G +A+E V T+ Q+A GLT
Sbjct: 1199 LRGYTDADYASDKMDRKSTTGFVFMLNDSVISWSSQKQPIVSMSSMESEYISLASGAREAVWLRRFLEELGFPQESPTIIHVDNQSAIKLVKNPEMHSR-SKHIDVRYHYTRELVSTGQLAIEYVHTSEQIADGLT 1333          
BLAST of mRNA_P-wetherbeei_contig18066.1.1 vs. uniprot
Match: A0A182HA04_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HA04_AEDAL)

HSP 1 Score: 92.0 bits (227), Expect = 7.460e-20
Identity = 58/135 (42.96%), Postives = 79/135 (58.52%), Query Frame = 1
Query:    1 LVGYSDANLAGCLDSGRSTTGGLFLLAGGVAAFSSRLQDSAARSAMESEYKALFDAAQKEEQLRTLLAHLGLELTAPTVIHEDNTAVLAVPMAAGHTRQSRHIRTRYHFTRELVAAGVIAMEQVSTAGQLAYGLT 405
            LVGY+DA+ AG L S +STTG +F+ AGG  +++SRLQD    S+MESEY AL +A+Q+   L  L    G     P  + EDN + +    +   T++SRHI TR  F +EL  AGV+ +   ST    A  LT
Sbjct:  121 LVGYADADWAGDLKSRKSTTGTVFMYAGGAISWTSRLQDFVTLSSMESEYVALSEASQEAVWLLKLFEDFGEPSFKPVTLWEDNQSCIKFVSSERTTKRSRHIETRQCFVKELCDAGVLKLLYCSTEEMAADLLT 255          
BLAST of mRNA_P-wetherbeei_contig18066.1.1 vs. uniprot
Match: A0A1X7SEB0_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SEB0_AMPQE)

HSP 1 Score: 92.0 bits (227), Expect = 1.210e-19
Identity = 52/131 (39.69%), Postives = 76/131 (58.02%), Query Frame = 1
Query:    1 LVGYSDANLAGCLDSGRSTTGGLFLLAGGVAAFSSRLQDSAARSAMESEYKALFDAAQKEEQLRTLLAHLGLELTAPTVIHEDNTAVLAVPMAAGHTRQSRHIRTRYHFTRELVAAGVIAMEQVSTAGQLA 393
            LVGYSDA+ AG LD   ST+G LFLLAGG  ++ S+ Q + + S  E+EY +L  A Q+   +R LL  +     APTVI EDN   +A+        +++HI  +YH+ RE +  G +++E   T   +A
Sbjct:  151 LVGYSDADWAGDLDDRHSTSGNLFLLAGGAISWLSKKQPTVSLSTAEAEYVSLCSATQEAVWIRRLLHDINCSQGAPTVIKEDNQGTIAIARNPVSHSRTKHIEIKYHYVRETIMDGQVSLEYCPTEEMIA 281          
BLAST of mRNA_P-wetherbeei_contig18066.1.1 vs. uniprot
Match: A0A8H8JJR7_9AGAM (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JJR7_9AGAM)

HSP 1 Score: 92.0 bits (227), Expect = 5.740e-19
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 1
Query:    1 LVGYSDANLAGCLDSGRSTTGGLFLLAGGVAAFSSRLQDSAARSAMESEYKALFDAAQKEEQLRTLLAHLGLELTAPTVIHEDNTAVLAVPMAAGHTRQSRHIRTRYHFTRELVAAGVIAMEQVSTAGQLAYGLT 405
            L GY DA+ AG   S RSTTG  F LAGG+ A+SSR Q + + S+ E+EY A   AA++   +R  ++ LGL    PT +  DN + +A+     + + ++HIR +YHF RE++A   + ++ + T  Q+A  LT
Sbjct:  526 LQGYVDADYAGDKSSSRSTTGWAFFLAGGLIAYSSRKQPTISLSSTEAEYVATSSAARELIWIRQFISELGLLPEGPTTVFSDNQSSIALAKNPANHQNTKHIRVKYHFIREVIALRELDLKYIPTDDQVADVLT 660          
BLAST of mRNA_P-wetherbeei_contig18066.1.1 vs. uniprot
Match: A0A8H8JF23_9AGAM (Copia-like polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JF23_9AGAM)

HSP 1 Score: 91.7 bits (226), Expect = 8.390e-19
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 1
Query:    1 LVGYSDANLAGCLDSGRSTTGGLFLLAGGVAAFSSRLQDSAARSAMESEYKALFDAAQKEEQLRTLLAHLGLELTAPTVIHEDNTAVLAVPMAAGHTRQSRHIRTRYHFTRELVAAGVIAMEQVSTAGQLAYGLT 405
            L GY DA+ AG   S RSTTG  F LAGG+ A+SSR Q + + S+ E+EY A   AA++   +R  ++ LGL    PT +  DN + +A+     + + ++HIR +YHF RE++A   + ++ + T  Q+A  LT
Sbjct: 1269 LRGYVDADYAGDKSSSRSTTGWAFFLAGGLIAYSSRKQPTISLSSTEAEYVATSSAARELIWIRQFISELGLLPEGPTTVFSDNQSSIALAKNPANHQNTKHIRVKYHFIREVIALRELDLKYIPTNDQVADVLT 1403          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18066.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182GEU4_AEDAL3.340e-2144.44Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A182G3L3_AEDAL8.210e-2142.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001C9BC1AB9.240e-2141.48secreted RxLR effector protein 161-like n=1 Tax=Ve... [more]
A0A182HCW7_AEDAL1.350e-2040.00Uncharacterized protein n=2 Tax=Aedes albopictus T... [more]
A0A6S7HIQ4_PARCT2.440e-2042.22Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A226DUK4_FOLCA5.250e-2044.12Copia protein n=1 Tax=Folsomia candida TaxID=15844... [more]
A0A182HA04_AEDAL7.460e-2042.96Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A1X7SEB0_AMPQE1.210e-1939.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H8JJR7_9AGAM5.740e-1939.26Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H8JF23_9AGAM8.390e-1939.26Copia-like polyprotein/retrotransposon n=1 Tax=Cer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18066contigP-wetherbeei_contig18066:126..545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog67593.Physo136303
PFAMsRVT_2,Retrotran_gag_2,rve
Model size420
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.14e-22
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size420
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186135.3982286-CDS-P-wetherbeei_contig18066:125..5451683186135.3982286-CDS-P-wetherbeei_contig18066:125..545Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18066 126..545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18066.1.1prot_P-wetherbeei_contig18066.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18066 126..545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18066.1.1

>prot_P-wetherbeei_contig18066.1.1 ID=prot_P-wetherbeei_contig18066.1.1|Name=mRNA_P-wetherbeei_contig18066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
LVGYSDANLAGCLDSGRSTTGGLFLLAGGVAAFSSRLQDSAARSAMESEY
KALFDAAQKEEQLRTLLAHLGLELTAPTVIHEDNTAVLAVPMAAGHTRQS
RHIRTRYHFTRELVAAGVIAMEQVSTAGQLAYGLTIGDR*
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mRNA from alignment at P-wetherbeei_contig18066:126..545-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18066.1.1 ID=mRNA_P-wetherbeei_contig18066.1.1|Name=mRNA_P-wetherbeei_contig18066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig18066:126..545- (Phaeothamnion wetherbeei SAG_119_79)
CTGGTGGGCTACAGCGACGCAAATCTCGCAGGATGCTTGGACAGCGGCCG CTCCACGACTGGCGGTCTATTTCTGCTAGCGGGCGGCGTCGCGGCTTTCT CGTCTCGGCTGCAGGATTCGGCGGCGCGATCGGCGATGGAGAGCGAGTAC AAGGCGCTCTTCGACGCGGCACAGAAGGAGGAGCAGCTACGGACGCTGCT GGCTCATCTGGGCTTGGAGCTGACTGCGCCAACGGTTATCCACGAGGACA ACACGGCGGTGCTGGCGGTGCCGATGGCGGCTGGACACACGCGCCAGTCG CGCCACATCCGCACCCGCTACCACTTCACGCGGGAGCTGGTGGCAGCAGG CGTGATCGCCATGGAGCAGGTCAGCACGGCTGGCCAGCTGGCGTACGGTC TGACAATCGGGGATCGCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18066:126..545-

>mRNA_P-wetherbeei_contig18066.1.1 ID=mRNA_P-wetherbeei_contig18066.1.1|Name=mRNA_P-wetherbeei_contig18066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig18066:126..545- (Phaeothamnion wetherbeei SAG_119_79)
CTGGTGGGCTACAGCGACGCAAATCTCGCAGGATGCTTGGACAGCGGCCG
CTCCACGACTGGCGGTCTATTTCTGCTAGCGGGCGGCGTCGCGGCTTTCT
CGTCTCGGCTGCAGGATTCGGCGGCGCGATCGGCGATGGAGAGCGAGTAC
AAGGCGCTCTTCGACGCGGCACAGAAGGAGGAGCAGCTACGGACGCTGCT
GGCTCATCTGGGCTTGGAGCTGACTGCGCCAACGGTTATCCACGAGGACA
ACACGGCGGTGCTGGCGGTGCCGATGGCGGCTGGACACACGCGCCAGTCG
CGCCACATCCGCACCCGCTACCACTTCACGCGGGAGCTGGTGGCAGCAGG
CGTGATCGCCATGGAGCAGGTCAGCACGGCTGGCCAGCTGGCGTACGGTC
TGACAATCGGGGATCGCTAA
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