mRNA_P-wetherbeei_contig1806.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1806.2.1
Unique NamemRNA_P-wetherbeei_contig1806.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1806.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1806contigP-wetherbeei_contig1806:1309..1854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size547
Hectar predicted targeting categoryother localisation
Exons1
Cds size546
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186135.164117-CDS-P-wetherbeei_contig1806:1308..18541683186135.164117-CDS-P-wetherbeei_contig1806:1308..1854Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1806 1309..1854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1806.2.1prot_P-wetherbeei_contig1806.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1806 1309..1854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1806.2.1

>prot_P-wetherbeei_contig1806.2.1 ID=prot_P-wetherbeei_contig1806.2.1|Name=mRNA_P-wetherbeei_contig1806.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
GRRGGVSGRGGRRRQHGHGAARSAPLGDGARPRGGRKQDAAHARHAGDGP
RCRSLQRRQQPRRRGGGGDAVTSVGGSAGSDRLPGAGGGGRIGPARRGPR
RGGGRRSASALGRADTDRSGHRGGSCGSRSGGGCGGGRSGTRVGAGGPTG
LLWRAIDAVISAQSVRQRAWRQRRLCGQPERG
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mRNA from alignment at P-wetherbeei_contig1806:1309..1854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1806.2.1 ID=mRNA_P-wetherbeei_contig1806.2.1|Name=mRNA_P-wetherbeei_contig1806.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig1806:1309..1854+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCGCCGTGGCGGCGTCAGTGGCCGCGGCGGCCGGCGCCGGCAGCATGG
GCATGGGGCAGCTCGTAGCGCGCCTCTGGGCGATGGCGCGCGCCCCCGAG
GCGGCCGGAAACAAGACGCTGCGCACGCTCGACATGCGGGCGATGGTCCG
CGCTGTCGATCGCTACAGCGGCGGCAGCAGCCGCGGCGGCGCGGGGGCGG
TGGTGATGCGGTCACCAGTGTCGGCGGCAGCGCTGGCAGCGACCGGCTTC
CTGGTGCTGGCGGCGGTGGCCGAATCGGACCTGCGCGCCGGGGGCCTCGG
CGTGGCGGTGGACGGCGGAGTGCTTCCGCGCTGGGAAGGGCCGACACTGA
CCGCAGCGGACATCGCGGTGGAAGCTGCGGCAGCCGGAGCGGCGGCGGCT
GCGGTGGCGGCCGGAGCGGCACCCGGGTCGGCGCTGGGGGCCCGACGGGG
CTCCTTTGGCGCGCAATCGACGCCGTCATATCGGCGCAGTCCGTACGGCA
GCGAGCGTGGCGGCAGCGACGGCTTTGTGGGCAGCCAGAACGGGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1806:1309..1854+

>mRNA_P-wetherbeei_contig1806.2.1 ID=mRNA_P-wetherbeei_contig1806.2.1|Name=mRNA_P-wetherbeei_contig1806.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig1806:1309..1854+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCGCCGTGGCGGCGTCAGTGGCCGCGGCGGCCGGCGCCGGCAGCATGG
GCATGGGGCAGCTCGTAGCGCGCCTCTGGGCGATGGCGCGCGCCCCCGAG
GCGGCCGGAAACAAGACGCTGCGCACGCTCGACATGCGGGCGATGGTCCG
CGCTGTCGATCGCTACAGCGGCGGCAGCAGCCGCGGCGGCGCGGGGGCGG
TGGTGATGCGGTCACCAGTGTCGGCGGCAGCGCTGGCAGCGACCGGCTTC
CTGGTGCTGGCGGCGGTGGCCGAATCGGACCTGCGCGCCGGGGGCCTCGG
CGTGGCGGTGGACGGCGGAGTGCTTCCGCGCTGGGAAGGGCCGACACTGA
CCGCAGCGGACATCGCGGTGGAAGCTGCGGCAGCCGGAGCGGCGGCGGCT
GCGGTGGCGGCCGGAGCGGCACCCGGGTCGGCGCTGGGGGCCCGACGGGG
CTCCTTTGGCGCGCAATCGACGCCGTCATATCGGCGCAGTCCGTACGGCA
GCGAGCGTGGCGGCAGCGACGGCTTTGTGGGCAGCCAGAACGGGGA
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