mRNA_P-wetherbeei_contig18057.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18057.1.1
Unique NamemRNA_P-wetherbeei_contig18057.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18057.1.1 vs. uniprot
Match: A0A836CM80_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM80_9STRA)

HSP 1 Score: 116 bits (291), Expect = 8.060e-31
Identity = 55/94 (58.51%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  187 RRTQWDLERQFSEASCPPEAVMRGLTAAVMALDKRSWLEVRDPLHRYGKNLREYYEAWQELGKPGRSFFQWLDVSSFELMSCPRDRLEADTVQY 468
            RR +  L+RQFSEAS PP  V+RGL    ++LDKRSWLEVRDP HRYGK LR YY  W  LGKPG SFF+WL+     +  C R+ L+ DTV+Y
Sbjct:    1 RRHRHVLQRQFSEASSPPPEVLRGLNMEGVSLDKRSWLEVRDPQHRYGKLLRLYYSEWDRLGKPGNSFFRWLEQREEGVEGCAREELDRDTVRY 94          
BLAST of mRNA_P-wetherbeei_contig18057.1.1 vs. uniprot
Match: D8LDY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY1_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 8.240e-28
Identity = 56/103 (54.37%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  205 LERQFS-EASCPPEAVMRGLTAAVMALDKRSWLEVRDPLHRYGKNLREYYEAWQELGKPGRSFFQWLDVSSFELMSCPRDRLEADTVQYLTTEEERRLYAVAL 510
            L  Q+S EAS PP  V++G     +ALDKRSWLEVRD  HRYGKNLR Y++ W   GKPG SFF+WL  +  +L  CPR  LE+D V Y   EE R  YA+ L
Sbjct:   36 LYHQYSNEASAPPPQVLQGWKMNCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRRGKPGGSFFKWLSAAEVQLEGCPRHELESDVVHYCRPEE-RHNYALRL 137          
BLAST of mRNA_P-wetherbeei_contig18057.1.1 vs. uniprot
Match: A0A7S2SKQ1_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKQ1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.530e-26
Identity = 56/98 (57.14%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  235 PPEAVMRGLTAAVMALDKRSWLEVRDPLHRYGKNLREYYEAWQELGKPGRSFFQWLDVSSFELMSCPRDRLEADTVQYLTTEEERRLYAVALAEGNRV 528
            PP+ V RGL      LD+R+WLEV DP HRY K+LR YY+AW  L +PG  F  WLD + FEL SCPR  LEADTV Y + EEER  YA+ + EG RV
Sbjct:  241 PPDEVTRGLREGFSQLDRRAWLEVLDPKHRYAKHLRAYYQAWDLLDRPGSDFLSWLDTAGFELDSCPRSVLEADTVHYCS-EEEREQYAIDI-EGGRV 336          
BLAST of mRNA_P-wetherbeei_contig18057.1.1 vs. uniprot
Match: A0A6H5KBQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBQ8_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.710e-25
Identity = 56/103 (54.37%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  205 LERQFS-EASCPPEAVMRGLTAAVMALDKRSWLEVRDPLHRYGKNLREYYEAWQELGKPGRSFFQWLDVSSFELMSCPRDRLEADTVQYLTTEEERRLYAVAL 510
            L  Q+S EAS PP  V++G     +ALDKRSWLEVRD  HRYGKNLR Y++ W   GKPG SFF+WL  +  +L  CPR  LE+D V Y   EE R  YA+ L
Sbjct:  276 LYHQYSNEASAPPPQVLQGWKMNCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRRGKPGGSFFKWLSAAEVQLEGCPRHELESDVVHYCRPEE-RHNYALRL 377          
BLAST of mRNA_P-wetherbeei_contig18057.1.1 vs. uniprot
Match: A0A7S2FAR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FAR6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.210e-23
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  208 ERQFSEASCPPEAVMRGLTA-AVMALDKRSWLEVRDPLHRYGKNLREYYEAWQELGKPGRSFFQWL-DVSSFELMSCPRDRLEADTVQYLTTEEERRLYAVALAEG 519
            E+     + PP  V+RG +A +   LD+RSWLEV DP HRY KNLR Y+EAW  +GKPG SF +WL +    EL SCPR  L+ +TV Y   E+ER  +A+ +  G
Sbjct:    2 EKTLHPPNPPPPEVLRGFSAGSTSQLDRRSWLEVLDPKHRYAKNLRSYFEAWDLMGKPGDSFLEWLHNEDCMELESCPRSVLDKETVHYCR-EDERDQFALIIENG 106          
BLAST of mRNA_P-wetherbeei_contig18057.1.1 vs. uniprot
Match: A0A423VZB0_9PEZI (Uncharacterized protein n=1 Tax=Cytospora leucostoma TaxID=1230097 RepID=A0A423VZB0_9PEZI)

HSP 1 Score: 76.3 bits (186), Expect = 5.970e-13
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  241 EAVMRGLTAAVMALDKRSWLEVRDPLHRYGKNLREYYEAWQELGKPGRSFFQWLDVS---SFELMSCPRDRLEADTVQYLTTEEERRLYAVALAEG 519
            EA +R    A+M +  + +LE+ DP HRYG NLR+Y+E W        SFF WLD     + EL +CPR+RLE + V+YL+ EE +   A   +EG
Sbjct:  248 EAKIRRRDNALM-MGLQYFLEMVDPKHRYGSNLRQYHEEWMRDTSTRESFFYWLDAGEGRNVELATCPRERLERERVRYLSREERQYYLATVDSEG 342          
BLAST of mRNA_P-wetherbeei_contig18057.1.1 vs. uniprot
Match: G7E4W5_MIXOS (Uncharacterized protein n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E4W5_MIXOS)

HSP 1 Score: 71.6 bits (174), Expect = 2.320e-11
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  280 LDKRSWLEVRDPLHRYGKNLREYYEAWQELGKPGRSFFQWLDVSSFELMS----CPRDRLEADTVQYLTTEEERRLYAVALAEG 519
            L+K+ WLE+ D  HRYG NL+ Y++AW E     ++FF WLD    +       CPR+RLE + + YL+ E+ R+ Y + + EG
Sbjct:  171 LEKQHWLELVDEKHRYGSNLKFYWQAWSEKDDTNQNFFHWLDHGDGKDFDAGPDCPRERLEKERITYLSVEQ-RQNYRLYIKEG 253          
BLAST of mRNA_P-wetherbeei_contig18057.1.1 vs. uniprot
Match: A0A077R1D9_9BASI (Uncharacterized protein n=1 Tax=Melanopsichium pennsylvanicum 4 TaxID=1398559 RepID=A0A077R1D9_9BASI)

HSP 1 Score: 70.9 bits (172), Expect = 4.260e-11
Identity = 30/73 (41.10%), Postives = 42/73 (57.53%), Query Frame = 1
Query:  280 LDKRSWLEVRDPLHRYGKNLREYYEAWQELGKPGRSFFQWLDVSS---FELMSCPRDRLEADTVQYLTTEEER 489
            L+ ++WLE+ DP HRYG NL+ Y+  W       ++F QWLD        L  CPR +LE + + YLT +E R
Sbjct:  154 LEDQNWLEMLDPKHRYGSNLKHYHRYWNLKADTRQNFLQWLDEGEGKEISLKECPRSKLEGERISYLTADERR 226          
BLAST of mRNA_P-wetherbeei_contig18057.1.1 vs. uniprot
Match: I2G2K2_USTH4 (Uncharacterized protein n=3 Tax=Ustilago TaxID=5269 RepID=I2G2K2_USTH4)

HSP 1 Score: 70.5 bits (171), Expect = 5.780e-11
Identity = 31/83 (37.35%), Postives = 45/83 (54.22%), Query Frame = 1
Query:  280 LDKRSWLEVRDPLHRYGKNLREYYEAWQELGKPGRSFFQWLDVSS---FELMSCPRDRLEADTVQYLTTEEERRLYAVALAEG 519
            ++ ++WLE+ DP HRYG NL+ Y+  W       ++F QWLD        L  CPR +LE + ++YLT +E R        EG
Sbjct:  152 MEDQNWLEMLDPKHRYGSNLKHYHRYWNLKADTRQNFLQWLDEGDGRELSLEECPRSKLEEERIRYLTADERRNYLTFIDNEG 234          
BLAST of mRNA_P-wetherbeei_contig18057.1.1 vs. uniprot
Match: V5EYA1_KALBG (Uncharacterized protein n=1 Tax=Kalmanozyma brasiliensis (strain GHG001) TaxID=1365824 RepID=V5EYA1_KALBG)

HSP 1 Score: 70.5 bits (171), Expect = 5.780e-11
Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 1
Query:  241 EAVMRGLTAAVMALDKRSWLEVRDPLHRYGKNLREYYEAWQELGKPGRSFFQWLDVSS---FELMSCPRDRLEADTVQYLTTEEER 489
            E  +R        ++ ++WLE+ DP HRYG NL+ Y+  W       ++F QWLD        L  CPR +LEA+ + YLT ++ R
Sbjct:  142 EEFIRESKVLTKRMEDQNWLEMLDPKHRYGSNLKHYHRYWNLKADTKQNFLQWLDEGDGKDLSLEECPRSKLEAERISYLTADQRR 227          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18057.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM80_9STRA8.060e-3158.51Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LDY1_ECTSI8.240e-2854.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2SKQ1_9STRA1.530e-2657.14Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A6H5KBQ8_9PHAE3.710e-2554.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FAR6_9STRA2.210e-2348.11Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A423VZB0_9PEZI5.970e-1342.71Uncharacterized protein n=1 Tax=Cytospora leucosto... [more]
G7E4W5_MIXOS2.320e-1140.48Uncharacterized protein n=1 Tax=Mixia osmundae (st... [more]
A0A077R1D9_9BASI4.260e-1141.10Uncharacterized protein n=1 Tax=Melanopsichium pen... [more]
I2G2K2_USTH45.780e-1137.35Uncharacterized protein n=3 Tax=Ustilago TaxID=526... [more]
V5EYA1_KALBG5.780e-1136.05Uncharacterized protein n=1 Tax=Kalmanozyma brasil... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18057contigP-wetherbeei_contig18057:175..1225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDY1
Model size537
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.35e-28
EggNOG OGs28J6G@1|root,2QS9S@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-23_003360.1
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186135.0788326-CDS-P-wetherbeei_contig18057:174..3901683186135.0788326-CDS-P-wetherbeei_contig18057:174..390Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18057 175..390 +
1683186135.0874197-CDS-P-wetherbeei_contig18057:609..7561683186135.0874197-CDS-P-wetherbeei_contig18057:609..756Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18057 610..756 +
1683186135.0950532-CDS-P-wetherbeei_contig18057:848..9651683186135.0950532-CDS-P-wetherbeei_contig18057:848..965Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18057 849..965 +
1683186135.1026893-CDS-P-wetherbeei_contig18057:1169..12231683186135.1026893-CDS-P-wetherbeei_contig18057:1169..1223Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18057 1170..1223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18057.1.1prot_P-wetherbeei_contig18057.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18057 175..1223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18057.1.1

>prot_P-wetherbeei_contig18057.1.1 ID=prot_P-wetherbeei_contig18057.1.1|Name=mRNA_P-wetherbeei_contig18057.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
ENERGSERAPKRFEMYPVAAGVVKFRRGAVVSVVSAMVSLEGGKVGGGEK
ERAPSPHSCVRQRRTQWDLERQFSEASCPPEAVMRGLTAAVMALDKRSWL
EVRDPLHRYGKNLREYYEAWQELGKPGRSFFQWLDVSSFELMSCPRDRLE
ADTVQYLTTEEERRLYAVALAEGNRVVV
back to top

mRNA from alignment at P-wetherbeei_contig18057:175..1225+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18057.1.1 ID=mRNA_P-wetherbeei_contig18057.1.1|Name=mRNA_P-wetherbeei_contig18057.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1051bp|location=Sequence derived from alignment at P-wetherbeei_contig18057:175..1225+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAATGAGAGAGGGAGCGAGAGAGCTCCAAAGCGCTTTGAAATGTATCC CGTCGCTGCCGGCGTAGTAAAATTCCGCCGGGGCGCTGTGGTCTCTGTTG TCTCCGCTATGGTTTCATTAGAAGGGGGAAAAGTTGGAGGAGGGGAGAAA GAAAGAGCTCCGAGCCCTCATTCCTGCGTGAGGCAAAGAAGAACGCAGTG GGACTTGGAGCGACAGGTAAATCCTTCTTATGTTTCATTTGAGGTAAAAT TTTACCTCTCCTCAAGATTCGACGATGGTTCTCTCCTCGCTTTCTCCTCC AATCACACCATCGAACGCGCATAAGTTTCTGCAAAGAATCATAGCATTTG ACACGTACAATTTGCTTGATTTATTTGGTTTCGCTGATGTTCCCGAGGCC TCTTTCACAACCTAAACTGCACACCGTTTCTGCAGTTCTCCGAAGCGTCT TGCCCACCTGAAGCGGTGATGCGCGGACTCACCGCCGCGGTGATGGCGCT CGATAAGCGGTCATGGCTCGAAGTGCGCGATCCGCTCCACCGCTACGGCA AGAACCTGCGCGAGTATTATGAGGCGTGGCAGGTAAATTGAAACGCGAAT GGGCGATCCGTTGGCGACGCTATCGTAGTAAGGGTTGAACTGAGACGTCG AACTTTGGACTTTTGATTCCGCAGGAGTTGGGCAAGCCGGGGCGCTCCTT CTTCCAGTGGCTCGACGTCTCATCATTCGAGCTAATGTCGTGCCCGCGCG ACCGCCTCGAGGCCGATACTGTCCAATATCTGACTACCGAGGTTCGTCAT AAGTTTTGCTTTAGGATGATTGGAAGCGCAAAGAACCTGGAAATGTTAAA AGCGATCAGTTAGCCGATTAGTTGTGCTTTTAGGATTTCCCGGTAGTCTT TTGGTTAATTGTTAGATTTCCGACTTCGCGCTCATTCGCTCCCTTTGCCT CGCCATTCCTTGCCCTTTTCTTCCTTTCGGCCGAAATGCAAGCAGGAGGA GCGCAGGCTGTATGCTGTGGCGCTGGCCGAAGGCAACCGTGTCGTCGTTC G
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18057:175..1225+

>mRNA_P-wetherbeei_contig18057.1.1 ID=mRNA_P-wetherbeei_contig18057.1.1|Name=mRNA_P-wetherbeei_contig18057.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig18057:175..1225+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAATGAGAGAGGGAGCGAGAGAGCTCCAAAGCGCTTTGAAATGTATCC
CGTCGCTGCCGGCGTAGTAAAATTCCGCCGGGGCGCTGTGGTCTCTGTTG
TCTCCGCTATGGTTTCATTAGAAGGGGGAAAAGTTGGAGGAGGGGAGAAA
GAAAGAGCTCCGAGCCCTCATTCCTGCGTGAGGCAAAGAAGAACGCAGTG
GGACTTGGAGCGACAGTTCTCCGAAGCGTCTTGCCCACCTGAAGCGGTGA
TGCGCGGACTCACCGCCGCGGTGATGGCGCTCGATAAGCGGTCATGGCTC
GAAGTGCGCGATCCGCTCCACCGCTACGGCAAGAACCTGCGCGAGTATTA
TGAGGCGTGGCAGGAGTTGGGCAAGCCGGGGCGCTCCTTCTTCCAGTGGC
TCGACGTCTCATCATTCGAGCTAATGTCGTGCCCGCGCGACCGCCTCGAG
GCCGATACTGTCCAATATCTGACTACCGAGGAGGAGCGCAGGCTGTATGC
TGTGGCGCTGGCCGAAGGCAACCGTGTCGTCGTT
back to top