mRNA_P-wetherbeei_contig18055.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18055.1.1
Unique NamemRNA_P-wetherbeei_contig18055.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18055.1.1 vs. uniprot
Match: D7G3I7_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I7_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.860e-14
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    4 EAECWYELADDDGKTYYFNTRSGMSVWEPPEWVDEIDPET 123
            E ECW+EL D+DG  YYFN  SGMS WEPP W+DEIDP T
Sbjct:  944 EGECWHELKDEDGSVYYFNATSGMSQWEPPMWLDEIDPTT 983
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BLAST of mRNA_P-wetherbeei_contig18055.1.1 vs. uniprot
Match: A0A7S4EDW7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDW7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.750e-11
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    4 EAECWYELADDDGKTYYFNTRSGMSVWEPPEWVDEIDPETSCTYYIN 144
            E E  YEL DDD + YYFN+ +G+S+WEP EW D +DP +   YY +
Sbjct:  566 EEEVIYELRDDDDRLYYFNSYTGVSMWEPLEWTDSVDPASGAVYYTH 612
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BLAST of mRNA_P-wetherbeei_contig18055.1.1 vs. uniprot
Match: A0A7S2CLZ4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CLZ4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.210e-9
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    4 EAECWYELADDDGKTYYFNTRSGMSVWEPPEWVDEIDPET 123
            E +  YEL D+ G  YYFN+ +G+S W PPEW+D +DP++
Sbjct:   41 EEDLIYELRDEAGDLYYFNSGTGVSDWNPPEWIDSVDPQS 80
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BLAST of mRNA_P-wetherbeei_contig18055.1.1 vs. uniprot
Match: UPI001F4F44A4 (WW domain-binding protein 4 n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F4F44A4)

HSP 1 Score: 50.1 bits (118), Expect = 9.200e-6
Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 1 
Query:    4 EAECWYELADDDGKTYYFNTRSGMSVWEPPE 96
            E + W+E   D+G TYY+NT SG SVWEPPE
Sbjct:  132 EKKVWWEAKSDEGHTYYWNTESGESVWEPPE 162
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18055.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G3I7_ECTSI4.860e-1470.00Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A7S4EDW7_9STRA8.750e-1151.06Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2CLZ4_9STRA8.210e-950.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI001F4F44A49.200e-661.29WW domain-binding protein 4 n=2 Tax=Schistocerca T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18055contigP-wetherbeei_contig18055:3..146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65071.PYU1_T014067
PFAMsEF-hand_7,WW
Model size144
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000231
EggNOG OGs2A9BM@1|root,2RYI4@2759|Eukaryota,1MFWK@121069|Pythiales
DescriptionSource PGD
Cds size144
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.9926655-CDS-P-wetherbeei_contig18055:2..1461683186134.9926655-CDS-P-wetherbeei_contig18055:2..146Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18055 3..146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18055.1.1prot_P-wetherbeei_contig18055.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18055 3..146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18055.1.1

>prot_P-wetherbeei_contig18055.1.1 ID=prot_P-wetherbeei_contig18055.1.1|Name=mRNA_P-wetherbeei_contig18055.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=48bp
GEAECWYELADDDGKTYYFNTRSGMSVWEPPEWVDEIDPETSCTYYIN
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mRNA from alignment at P-wetherbeei_contig18055:3..146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18055.1.1 ID=mRNA_P-wetherbeei_contig18055.1.1|Name=mRNA_P-wetherbeei_contig18055.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig18055:3..146+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGAGGCGGAGTGCTGGTACGAGCTGGCGGACGACGACGGCAAGACGTA
CTACTTCAACACACGCAGCGGGATGTCGGTGTGGGAGCCGCCCGAGTGGG
TGGACGAGATCGATCCCGAGACCTCGTGCACCTACTACATCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18055:3..146+

>mRNA_P-wetherbeei_contig18055.1.1 ID=mRNA_P-wetherbeei_contig18055.1.1|Name=mRNA_P-wetherbeei_contig18055.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig18055:3..146+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGAGGCGGAGTGCTGGTACGAGCTGGCGGACGACGACGGCAAGACGTA
CTACTTCAACACACGCAGCGGGATGTCGGTGTGGGAGCCGCCCGAGTGGG
TGGACGAGATCGATCCCGAGACCTCGTGCACCTACTACATCAAC
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