mRNA_P-wetherbeei_contig1805.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1805.3.1
Unique NamemRNA_P-wetherbeei_contig1805.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1805.3.1 vs. uniprot
Match: D8LMH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH6_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.520e-20
Identity = 39/73 (53.42%), Postives = 59/73 (80.82%), Query Frame = 2 
Query:  599 VGFLSLEEEEERDLDDGAAALYVVVVGWLMLGIGCVYFLMGICCIQGVRDRKLAKYRTLVAHAEVQEALREAH 817
            VG L LEEE+E+ LD G   LY+ ++ W+M+GIG +YFL+G+CC++ +RD+K+A+++TLVAHAE+Q A+R  H
Sbjct:   95 VGVLVLEEEDEKGLDLGGFGLYITIIAWIMVGIGALYFLLGLCCVKRIRDKKMARHKTLVAHAEMQAAMRRDH 167
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BLAST of mRNA_P-wetherbeei_contig1805.3.1 vs. uniprot
Match: A0A6H5JBP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBP3_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 3.940e-20
Identity = 40/73 (54.79%), Postives = 59/73 (80.82%), Query Frame = 2 
Query:  599 VGFLSLEEEEERDLDDGAAALYVVVVGWLMLGIGCVYFLMGICCIQGVRDRKLAKYRTLVAHAEVQEALREAH 817
            VG L LEEE+E+ LD G   LY+ +V W+M+GIG +YFL+G+CC++ +RD+K+A+++TLVAHAE+Q A+R  H
Sbjct:  150 VGVLVLEEEDEKGLDLGGFGLYITIVAWIMVGIGALYFLLGLCCVKRIRDKKMARHKTLVAHAEMQAAMRRDH 222
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BLAST of mRNA_P-wetherbeei_contig1805.3.1 vs. uniprot
Match: W7TYB2_9STRA (Golgi apparatus membrane protein TVP15 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYB2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.670e-7
Identity = 28/70 (40.00%), Postives = 47/70 (67.14%), Query Frame = 2 
Query:  599 VGFLSLEEEEERDLDDGAAALYVVVVGWLMLGIGCVYFLMGICCIQGVRDRKLAKYRTLVAHAEVQEALR 808
            VG LS+++E E +       +++   G  ++G+G +YF+MG+ C++GVRDR+ A Y  L + AE++EALR
Sbjct:  188 VGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALR 257
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BLAST of mRNA_P-wetherbeei_contig1805.3.1 vs. uniprot
Match: A0A4D9D1W9_9STRA (Cryptochrome DASH n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1W9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.640e-7
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 2 
Query:  599 VGFLSLEEEEERDLDDGAAALYVVVVGWLMLGIGCVYFLMGICCIQGVRDRKLAKYRTLVAHAEVQEALR 808
            VG LS+++E E +        ++   G  ++G+G +YF+MG+ C++GVRDR+ A Y  L + AE++EALR
Sbjct:  656 VGLLSIKQEVEHEARINIVNAFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALR 725
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1805.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMH6_ECTSI1.520e-2053.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBP3_9PHAE3.940e-2054.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TYB2_9STRA1.670e-740.00Golgi apparatus membrane protein TVP15 n=1 Tax=Nan... [more]
A0A4D9D1W9_9STRA5.640e-740.00Cryptochrome DASH n=1 Tax=Nannochloropsis salina C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1805contigP-wetherbeei_contig1805:5409..6611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMH6
PFAMsCOPI_assoc
Model size874
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons2
Evalue4.9e-23
EggNOG OGs2C5ZJ@1|root,2SE8F@2759|Eukaryota
DescriptionCOPI associated protein
Cds size399
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.8209984-UTR-P-wetherbeei_contig1805:5408..54501683186134.8209984-UTR-P-wetherbeei_contig1805:5408..5450Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1805 5409..5450 -
1683186134.840471-UTR-P-wetherbeei_contig1805:5849..60481683186134.840471-UTR-P-wetherbeei_contig1805:5849..6048Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1805 5850..6048 -
1683186134.8495736-UTR-P-wetherbeei_contig1805:6377..66111683186134.8495736-UTR-P-wetherbeei_contig1805:6377..6611Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1805 6378..6611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.8314686-CDS-P-wetherbeei_contig1805:5450..58491683186134.8314686-CDS-P-wetherbeei_contig1805:5450..5849Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1805 5451..5849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1805.3.1prot_P-wetherbeei_contig1805.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1805 5451..5849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1805.3.1

>prot_P-wetherbeei_contig1805.3.1 ID=prot_P-wetherbeei_contig1805.3.1|Name=mRNA_P-wetherbeei_contig1805.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
MSFALCVKWGRRGHKHEGRKRFRSSARIAWLPLTEILSPFPSGTHRCRLR
LLLNSVGFLSLEEEEERDLDDGAAALYVVVVGWLMLGIGCVYFLMGICCI
QGVRDRKLAKYRTLVAHAEVQEALREAHAGGA*
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mRNA from alignment at P-wetherbeei_contig1805:5409..6611-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1805.3.1 ID=mRNA_P-wetherbeei_contig1805.3.1|Name=mRNA_P-wetherbeei_contig1805.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1203bp|location=Sequence derived from alignment at P-wetherbeei_contig1805:5409..6611- (Phaeothamnion wetherbeei SAG_119_79)
GCAAGGACTACAGGAAGCATGGCGCAATCAACCAAGATGATGGCAGTGAC
TACGTTTCGGGCAGTGATAACGAGGAGGACGAATTTGGTCCGACGGGAGT
GTCGCCGAGCGACATTCGCCGCGGCTGCCTTTTGGACACGTTTATCACGC
TTAACGTTATCACCATCCTGGTTGCACTCGGCGTTGCGACTGGACAGGTC
CTCATCCTCATCTACCTGCACGACATCCTCTCCAGTAAGTGCACCAGTGC
TGTGTGTGGCCGTTCGTTCGCCTTTGTTTTCAAATTATTAGTGATAAGAA
GCGCATCCCGCCGCAACTTGCAACGAGTTTGCTTGGAAAGAGAGCCGTTC
GAGAGTTTTTTCAATGAGAAACTGTACACCAGAAAAGTGCGTTTTCCTAC
GTTGGGAGAGGCTGGAAATTCGTTTTGTCCTGCTATGCGGCGTCATTAAG
CATTGTCTCGTCAGAGTTATTGAAATGTTTCACATCCCATCACAACGTTC
AAGCCAGCAGTTCAGTAATTTTTCCCTGTTTCTCTTCCTTGACGGCACAA
CGTCCATTCGCAGTCCCCGGACTCGCAGTTAGGAGCTACAACGTCATCTT
CTGCCTCCTGATTGTCTTCGGCGAGCTGGACTGGACGCAGGCGATGAGGG
TGCACCCATTCTTGCAAAACTGGGTTGGCCGGGGCTTCCTCTATGCATTG
TGAGTTTCTCGCCTCTTCTTTCCTTTTCTTTGCCATTGTATTCGTTGTGT
TAATTGGTTCTGATGTCGTTTGCGTTGTGCGTAAAATGGGGCAGGCGCGG
ACATAAGCACGAAGGACGGAAACGCTTTCGATCGTCGGCTCGTATTGCGT
GGCTTCCATTGACTGAAATACTGTCGCCGTTTCCATCCGGCACCCACCGT
TGCCGGCTCCGCCTATTGCTGAACAGCGTGGGCTTTTTGAGTTTGGAGGA
GGAGGAGGAGCGCGACCTGGATGACGGGGCGGCCGCGCTCTATGTGGTGG
TGGTCGGGTGGCTCATGCTGGGGATCGGATGCGTCTACTTCCTTATGGGG
ATTTGCTGCATACAGGGCGTTAGAGACCGAAAGCTGGCGAAGTACAGAAC
GCTCGTGGCACACGCCGAGGTGCAGGAAGCGCTCCGGGAAGCGCATGCCG
GAGGGGCATAGGGGGTCGTTGGCGGGCCGTTAACACATCACAACATGAGC
AGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1805:5409..6611-

>mRNA_P-wetherbeei_contig1805.3.1 ID=mRNA_P-wetherbeei_contig1805.3.1|Name=mRNA_P-wetherbeei_contig1805.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig1805:5409..6611- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTTTGCGTTGTGCGTAAAATGGGGCAGGCGCGGACATAAGCACGA
AGGACGGAAACGCTTTCGATCGTCGGCTCGTATTGCGTGGCTTCCATTGA
CTGAAATACTGTCGCCGTTTCCATCCGGCACCCACCGTTGCCGGCTCCGC
CTATTGCTGAACAGCGTGGGCTTTTTGAGTTTGGAGGAGGAGGAGGAGCG
CGACCTGGATGACGGGGCGGCCGCGCTCTATGTGGTGGTGGTCGGGTGGC
TCATGCTGGGGATCGGATGCGTCTACTTCCTTATGGGGATTTGCTGCATA
CAGGGCGTTAGAGACCGAAAGCTGGCGAAGTACAGAACGCTCGTGGCACA
CGCCGAGGTGCAGGAAGCGCTCCGGGAAGCGCATGCCGGAGGGGCATAG
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