mRNA_P-wetherbeei_contig18043.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18043.2.1
Unique NamemRNA_P-wetherbeei_contig18043.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18043.2.1 vs. uniprot
Match: UPI0019CBCD33 (DUF962 domain-containing protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019CBCD33)

HSP 1 Score: 221 bits (564), Expect = 4.050e-70
Identity = 111/171 (64.91%), Postives = 133/171 (77.78%), Query Frame = 2
Query:  179 VKTLEDQMSFYAAYHQDTRNKLTHFVGVPAIIVAILAVLAWARADLGGTQVSAAMAVTTLLLAYYLALDALLGLAMIAVFAGLLGAGESIAALPMREAAAWILPLFVGGWIVQLLGHVFEGRKPALADNLFQVFVAPIFLCAEVFFLLGYKPALHAAVQRRALQMRAEAGI 691
            +KTLEDQMSFYAAYHQD RNK THFVGVP I+ +++  L W R +LGG ++SAA+ VT +L  YYL LD  LGLAM AVFA +L A E ++   +  +  W L LFVGGW +QL GHV+EGRKPALADNLFQ+FVAPIFL AE FF LGYKP LH AVQRRA++MRA+AG+
Sbjct:    1 MKTLEDQMSFYAAYHQDARNKATHFVGVPIIVFSLMIPLGWLRMELGGHEISAALLVTAILFVYYLVLDLPLGLAMGAVFAAMLWAAEPLSRAALGASVTWFLVLFVGGWALQLWGHVYEGRKPALADNLFQIFVAPIFLAAEAFFALGYKPKLHEAVQRRAMEMRAQAGV 171          
BLAST of mRNA_P-wetherbeei_contig18043.2.1 vs. uniprot
Match: A0A536SVK9_9PROT (DUF962 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SVK9_9PROT)

HSP 1 Score: 209 bits (533), Expect = 1.330e-65
Identity = 102/167 (61.08%), Postives = 129/167 (77.25%), Query Frame = 2
Query:  179 VKTLEDQMSFYAAYHQDTRNKLTHFVGVPAIIVAILAVLAWARADLGGTQVSAAMAVTTLLLAYYLALDALLGLAMIAVFAGLLGAGESIAALPMREAAAWILPLFVGGWIVQLLGHVFEGRKPALADNLFQVFVAPIFLCAEVFFLLGYKPALHAAVQRRALQMRA 679
            +K+LE+QM+ Y+AYHQD RN+ THF+GVP I++++   LAW R DL G  +SA M +  ++LAYY ALD +LG AM+ VF  LL AGE IAAL       W   LF+GGWI+QL+GH+FEGR+PALADNLFQ+F+APIFLCAE FF LGYKP LHAAV+ RAL++RA
Sbjct:    1 MKSLEEQMAVYSAYHQDARNRATHFIGVPLIVLSLFIPLAWLRVDLAGVAISAGMVLGAIVLAYYFALDLVLGFAMLVVFVVLLWAGERIAALGSTTGWLWFTALFIGGWILQLVGHLFEGRRPALADNLFQIFIAPIFLCAEAFFALGYKPRLHAAVRERALRLRA 167          
BLAST of mRNA_P-wetherbeei_contig18043.2.1 vs. uniprot
Match: A0A536XTC4_9PROT (DUF962 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XTC4_9PROT)

HSP 1 Score: 206 bits (524), Expect = 3.090e-64
Identity = 103/167 (61.68%), Postives = 126/167 (75.45%), Query Frame = 2
Query:  179 VKTLEDQMSFYAAYHQDTRNKLTHFVGVPAIIVAILAVLAWARADLGGTQVSAAMAVTTLLLAYYLALDALLGLAMIAVFAGLLGAGESIAALPMREAAAWILPLFVGGWIVQLLGHVFEGRKPALADNLFQVFVAPIFLCAEVFFLLGYKPALHAAVQRRALQMRA 679
            +K+LE+Q++ YAAYH+D RNK THF+GVP I++A+   LAW R DLGGT VSA M +  ++L YY  LD   G AM+AVFA LL AGE IA L       W   LF+GGWI+QL+GHV+EGR+PALADNL Q+F+APIFL AEVFF LGYKP LHAAVQ RA ++RA
Sbjct:    1 MKSLEEQLAIYAAYHRDGRNKATHFIGVPVIVLALFIPLAWLRFDLGGTAVSAGMVLAAIVLLYYFVLDIAFGFAMLAVFAALLWAGERIATLGAVAGWTWFAVLFIGGWILQLVGHVYEGRRPALADNLLQIFIAPIFLAAEVFFALGYKPQLHAAVQERAQRLRA 167          
BLAST of mRNA_P-wetherbeei_contig18043.2.1 vs. uniprot
Match: A0A537BVN7_9PROT (DUF962 domain-containing protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BVN7_9PROT)

HSP 1 Score: 199 bits (505), Expect = 9.630e-61
Identity = 102/166 (61.45%), Postives = 123/166 (74.10%), Query Frame = 2
Query:  179 VKTLEDQMSFYAAYHQDTRNKLTHFVGVPAIIVAILAVLAWARADLGGTQVSAAMAVTTLLLAYYLALDALLGLAMIAVFAGLLGAGESIAALPMREAAAWILPLFVGGWIVQLLGHVFEGRKPALADNLFQVFVAPIFLCAEVFFLLGYKPALHAAVQRRALQMR 676
            +KTLE+QM+FYAAYHQD RNK THF+GVPAI++++   LAW R +LGG  +SAAM     +L YY  LD  L L M+ +   L+ AGE IA         W   LFVGGWI+QL+GHVFEGRKPALADNLFQ+FVAPIFLCAE+ F LGYKP LHA +Q+RAL+MR
Sbjct:   45 MKTLEEQMAFYAAYHQDARNKATHFIGVPAIMLSLFIPLAWLRLELGGVAISAAMLFAAAVLVYYFLLDVPLALVMLLITGILVLAGERIAGQGAARGWVWFGVLFVGGWILQLVGHVFEGRKPALADNLFQIFVAPIFLCAELAFALGYKPELHADMQQRALRMR 210          
BLAST of mRNA_P-wetherbeei_contig18043.2.1 vs. uniprot
Match: A0A177QZ98_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QZ98_9PROT)

HSP 1 Score: 196 bits (499), Expect = 1.850e-60
Identity = 107/162 (66.05%), Postives = 120/162 (74.07%), Query Frame = 2
Query:  200 MSFYAAYHQDTRNKLTHFVGVPAIIVAILAVLAWARADLGGTQVSAAMAVTTLLLAYYLALDALLGLAMIAVFAGLLGAGESIAALPMREAAAWILPLFVGGWIVQLLGHVFEGRKPALADNLFQVFVAPIFLCAEVFFLLGYKPALHAAVQRRALQMRAEA 685
            MSFYAAYHQD RNK THFVGVP I+++++  L+W R D     VSAAM VT  LLAYYL LD  LGLAM AV   LL  G++IA         W   LFVGGWI+QL+GHVFEGRKPAL  NLFQ+FVAPIFLCAEVFF LGYKP LHAA+Q RAL+MRA A
Sbjct:    1 MSFYAAYHQDARNKATHFVGVPVIVLSLMIPLSWLRID----AVSAAMVVTAALLAYYLVLDLWLGLAMCAVMGALLWIGQAIADQGALAGWIWFAILFVGGWILQLVGHVFEGRKPALTANLFQIFVAPIFLCAEVFFALGYKPRLHAAMQERALRMRAAA 158          
BLAST of mRNA_P-wetherbeei_contig18043.2.1 vs. uniprot
Match: A0A537BQJ6_9PROT (DUF962 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BQJ6_9PROT)

HSP 1 Score: 192 bits (488), Expect = 9.750e-59
Identity = 102/168 (60.71%), Postives = 120/168 (71.43%), Query Frame = 2
Query:  179 VKTLEDQMSFYAAYHQDTRNKLTHFVGVPAIIVAILAVLAWARADLGGTQVSAAMAVTTLLLAYYLALDALLGLAMIAVFAGLLGAGESIAALPMREAAAWIL--PLFVGGWIVQLLGHVFEGRKPALADNLFQVFVAPIFLCAEVFFLLGYKPALHAAVQRRALQMR 676
            +KTLE QM FYAAYHQD RNK THF+GVPAI++++   LAW R +LG   ++AAM     +L YY  LD  LGLAM+ V A L+  G+ IA         W     LFVGGWI+QL+GH FEGRKPALADNL Q+FVAPIFLCAE+FF LGYKP LH AVQ RAL+MR
Sbjct:    1 MKTLEQQMGFYAAYHQDARNKATHFIGVPAIMLSLFIPLAWLRIELGAAPITAAMLFAAAVLVYYFMLDVPLGLAMLVVSALLVWLGQLIADQGALRGWGWTWFGVLFVGGWILQLVGHGFEGRKPALADNLLQIFVAPIFLCAEIFFALGYKPELHCAVQERALRMR 168          
BLAST of mRNA_P-wetherbeei_contig18043.2.1 vs. uniprot
Match: A0A537AA70_9PROT (DUF962 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537AA70_9PROT)

HSP 1 Score: 187 bits (475), Expect = 7.480e-57
Identity = 101/169 (59.76%), Postives = 119/169 (70.41%), Query Frame = 2
Query:  179 VKTLEDQMSFYAAYHQDTRNKLTHFVGVPAIIVAILAVLAWARADLGGTQVSAAMAVTTLLLAYYLALDALLGLAMIAVFAGLLGAGESIAALPMREAAAWILPLFVGGWIVQLLGHVFEGRKPALADNLFQVFVAPIFLCAEVFFLLGYKPALHAAVQRRALQMRAEA 685
            +++LE+QM+ YAAYHQD RNK THF+GVP I++++   LAW R D     VSAAM     L  YYL LD  LGLAM+ V A L   GE IA         W   LFVGGWI+QL+GHV+EGR+PALADNLFQ+FVAPIFL AE FF LGYKP L  AVQRRA++MRA A
Sbjct:    1 MRSLEEQMATYAAYHQDARNKATHFIGVPVIVLSLFIPLAWLRID----AVSAAMIAAAALAVYYLVLDLALGLAMLVVLAVLAWLGERIAMQGAVAGWTWFGVLFVGGWILQLVGHVYEGRRPALADNLFQIFVAPIFLAAEAFFALGYKPGLQEAVQRRAMKMRASA 165          
BLAST of mRNA_P-wetherbeei_contig18043.2.1 vs. uniprot
Match: A0A1F4EVF8_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4EVF8_9PROT)

HSP 1 Score: 186 bits (471), Expect = 3.900e-56
Identity = 96/159 (60.38%), Postives = 115/159 (72.33%), Query Frame = 2
Query:  179 VKTLEDQMSFYAAYHQDTRNKLTHFVGVPAIIVAILAVLAWARADLGGTQVSAAMAVTTLLLAYYLALDALLGLAMIAVFAGLLGAGESIAALPMREAAAWILPLFVGGWIVQLLGHVFEGRKPALADNLFQVFVAPIFLCAEVFFLLGYKPALHAAVQ 655
            +K LE+QM+FYAAYHQD RNK THFVGVP I++AIL  L+W R +  G  V+AAM +   +LAYY  LD  L LAM+ V   L+ A E+IAAL       W   LFVGGWI+QL+GHVFEGR+PAL DNLFQ+FVAP+FL AEVFF LGYKP L   +Q
Sbjct:    1 MKMLEEQMAFYAAYHQDARNKATHFVGVPLIMLAILIPLSWLRLEAAGITVTAAMLLPAAVLAYYFMLDLPLALAMLIVIGALIWAAETIAALGAAPGWGWFGALFVGGWILQLIGHVFEGRRPALVDNLFQIFVAPLFLAAEVFFALGYKPELRKRIQ 159          
BLAST of mRNA_P-wetherbeei_contig18043.2.1 vs. uniprot
Match: A0A1F4CR92_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CR92_9PROT)

HSP 1 Score: 168 bits (426), Expect = 3.280e-49
Identity = 91/166 (54.82%), Postives = 106/166 (63.86%), Query Frame = 2
Query:  179 VKTLEDQMSFYAAYHQDTRNKLTHFVGVPAIIVAILAVLAWARADLGGTQVSAAMAVTTLLLAYYLALDALLGLAMIAVFAGLLGAGESIAALPMREAAAWILPLFVGGWIVQLLGHVFEGRKPALADNLFQVFVAPIFLCAEVFFLLGYKPALHAAVQRRALQMR 676
            +KTLEDQM+FYAAYHQD RNK +HF+GVP I++++   LAW R D+GG                                   +  G  +AAL   +  AW   LFVGGWIVQL+GHVFEGRKPALADNLFQ+FVAPIFL AEVFF  GYKP LH AVQ+RALQMR
Sbjct:    1 MKTLEDQMAFYAAYHQDGRNKASHFIGVPMIMLSLFIPLAWIRLDVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVWLGHQVAALGAAQGWAWFGVLFVGGWIVQLVGHVFEGRKPALADNLFQIFVAPIFLAAEVFFAFGYKPRLHEAVQKRALQMR 166          
BLAST of mRNA_P-wetherbeei_contig18043.2.1 vs. uniprot
Match: A0A836X2Q1_9PROT (DUF962 domain-containing protein n=1 Tax=Sneathiellales bacterium TaxID=2528251 RepID=A0A836X2Q1_9PROT)

HSP 1 Score: 167 bits (424), Expect = 6.790e-49
Identity = 88/161 (54.66%), Postives = 112/161 (69.57%), Query Frame = 2
Query:  179 VKTLEDQMSFYAAYHQDTRNKLTHFVGVPAIIVAILAVLAWARADLGGTQVSAAMAVTTLLLAYYLALDALLGLAMIAVFAGLLGAGESIAALPMREAAAWILPLFVGGWIVQLLGHVFEGRKPALADNLFQVFVAPIFLCAEVFFLLGYKPALHAAVQRR 661
            +KT+ +QM+FYAAYH++ RN+ THF+GVPAI  AIL  +AW    LGG QVS AMA    +LAYYL LD L+G+  + +F  +L   E +A L +          FVGGWI+QL+GHVFE R+PALADNLFQVFVAP+FL AEV+  LG+K  L A V+ R
Sbjct:    3 MKTMAEQMAFYAAYHRNARNRATHFIGVPAIAFAILIPMAWVAVSLGGGQVSLAMAFVFAVLAYYLRLDFLIGITAVIIFVPMLILAEWVAGLTLTTGLITFAVSFVGGWILQLIGHVFERRRPALADNLFQVFVAPLFLIAEVYLALGFKKTLAAEVKIR 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18043.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019CBCD334.050e-7064.91DUF962 domain-containing protein n=1 Tax=Candidatu... [more]
A0A536SVK9_9PROT1.330e-6561.08DUF962 domain-containing protein n=1 Tax=Betaprote... [more]
A0A536XTC4_9PROT3.090e-6461.68DUF962 domain-containing protein n=1 Tax=Betaprote... [more]
A0A537BVN7_9PROT9.630e-6161.45DUF962 domain-containing protein n=2 Tax=Betaprote... [more]
A0A177QZ98_9PROT1.850e-6066.05Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A537BQJ6_9PROT9.750e-5960.71DUF962 domain-containing protein n=1 Tax=Betaprote... [more]
A0A537AA70_9PROT7.480e-5759.76DUF962 domain-containing protein n=1 Tax=Betaprote... [more]
A0A1F4EVF8_9PROT3.900e-5660.38Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4CR92_9PROT3.280e-4954.82Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A836X2Q1_9PROT6.790e-4954.66DUF962 domain-containing protein n=1 Tax=Sneathiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18043contigP-wetherbeei_contig18043:235..946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog93220.LV28_09055
PFAMsDUF962
Model size712
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.74e-45
EggNOG OGsCOG4539@1|root,COG4539@2|Bacteria,1RHUB@1224|Proteobacteria,2VTDF@28216|Betaproteobacteria,1K4TZ@119060|Burkholderiaceae
DescriptionProtein of unknown function (DUF962)
Cds size513
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.5523295-CDS-P-wetherbeei_contig18043:234..7471683186134.5523295-CDS-P-wetherbeei_contig18043:234..747Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18043 235..747 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.5615165-UTR-P-wetherbeei_contig18043:747..9461683186134.5615165-UTR-P-wetherbeei_contig18043:747..946Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18043 748..946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18043.2.1prot_P-wetherbeei_contig18043.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18043 235..747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18043.2.1

>prot_P-wetherbeei_contig18043.2.1 ID=prot_P-wetherbeei_contig18043.2.1|Name=mRNA_P-wetherbeei_contig18043.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
MSFYAAYHQDTRNKLTHFVGVPAIIVAILAVLAWARADLGGTQVSAAMAV
TTLLLAYYLALDALLGLAMIAVFAGLLGAGESIAALPMREAAAWILPLFV
GGWIVQLLGHVFEGRKPALADNLFQVFVAPIFLCAEVFFLLGYKPALHAA
VQRRALQMRAEAGIGAAQPG*
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mRNA from alignment at P-wetherbeei_contig18043:235..946-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18043.2.1 ID=mRNA_P-wetherbeei_contig18043.2.1|Name=mRNA_P-wetherbeei_contig18043.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=712bp|location=Sequence derived from alignment at P-wetherbeei_contig18043:235..946- (Phaeothamnion wetherbeei SAG_119_79)
GCCCTGTGGCCGCGATGCACGCCGTCGAAATTGCCGACCGTCACCGCCAG CCGGCCCGCGGGGGCGGCCGCCGACGGCGGGAAATGTCCATGCGTGACGA GCATGCCTGAGCGCAGTAAAATGATGAATTATAGCGGATTTCACCTCTCC CCCGCCCTTGTCCAGAGGAGGAAACGGCGTGAAAACTCTCGAAGACCAGA TGTCGTTCTATGCGGCCTATCATCAGGACACGCGCAACAAGCTGACCCAC TTCGTCGGCGTGCCCGCGATCATCGTCGCAATCCTCGCCGTGCTTGCCTG GGCCCGGGCCGACCTTGGCGGCACCCAGGTCAGTGCCGCGATGGCGGTAA CCACCCTGCTCCTCGCCTATTACCTTGCACTCGACGCCCTGCTCGGCCTT GCAATGATCGCCGTGTTCGCCGGCCTGCTCGGGGCGGGCGAGTCGATCGC CGCCCTCCCGATGCGCGAGGCCGCCGCGTGGATCCTCCCGCTCTTCGTCG GAGGCTGGATCGTGCAGTTGCTCGGCCACGTCTTCGAGGGCCGCAAGCCC GCGCTGGCGGACAACCTGTTCCAGGTGTTCGTCGCGCCGATCTTCCTTTG CGCGGAGGTGTTCTTCCTGCTCGGGTACAAGCCGGCGCTGCATGCCGCCG TGCAGAGGCGTGCGCTGCAGATGCGCGCAGAGGCGGGCATCGGGGCCGCA CAGCCGGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18043:235..946-

>mRNA_P-wetherbeei_contig18043.2.1 ID=mRNA_P-wetherbeei_contig18043.2.1|Name=mRNA_P-wetherbeei_contig18043.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig18043:235..946- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTTCTATGCGGCCTATCATCAGGACACGCGCAACAAGCTGACCCA
CTTCGTCGGCGTGCCCGCGATCATCGTCGCAATCCTCGCCGTGCTTGCCT
GGGCCCGGGCCGACCTTGGCGGCACCCAGGTCAGTGCCGCGATGGCGGTA
ACCACCCTGCTCCTCGCCTATTACCTTGCACTCGACGCCCTGCTCGGCCT
TGCAATGATCGCCGTGTTCGCCGGCCTGCTCGGGGCGGGCGAGTCGATCG
CCGCCCTCCCGATGCGCGAGGCCGCCGCGTGGATCCTCCCGCTCTTCGTC
GGAGGCTGGATCGTGCAGTTGCTCGGCCACGTCTTCGAGGGCCGCAAGCC
CGCGCTGGCGGACAACCTGTTCCAGGTGTTCGTCGCGCCGATCTTCCTTT
GCGCGGAGGTGTTCTTCCTGCTCGGGTACAAGCCGGCGCTGCATGCCGCC
GTGCAGAGGCGTGCGCTGCAGATGCGCGCAGAGGCGGGCATCGGGGCCGC
ACAGCCGGGCTGA
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