mRNA_P-wetherbeei_contig18043.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18043.1.1
Unique NamemRNA_P-wetherbeei_contig18043.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18043.1.1 vs. uniprot
Match: A0A177QZE8_9PROT (Transglut_core2 domain-containing protein n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QZE8_9PROT)

HSP 1 Score: 106 bits (264), Expect = 2.100e-26
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 LDVINRMIVVAPDAHGELRDRGDVYRGMEAFRAALRDFSAYLEREPDAPDADEVRAKVVELTALCARLN 207
            LDV+NRM+VVAPDA GELRDRG VY  +E +RAAL+D S Y+EREPDAPD DEVR +++EL++LCARLN
Sbjct:  215 LDVLNRMLVVAPDASGELRDRGIVYHKLECYRAALKDLSDYVEREPDAPDGDEVRVRLMELSSLCARLN 283
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BLAST of mRNA_P-wetherbeei_contig18043.1.1 vs. uniprot
Match: A0A1F4CR98_9PROT (Transglut_core2 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CR98_9PROT)

HSP 1 Score: 104 bits (259), Expect = 1.180e-25
Identity = 47/69 (68.12%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:    1 LDVINRMIVVAPDAHGELRDRGDVYRGMEAFRAALRDFSAYLEREPDAPDADEVRAKVVELTALCARLN 207
            LDV+NRM++VAPDA+ ELRDRG VY+ +E +RAAL+D S Y+EREPDAPD+D+VR +++EL+ALCARLN
Sbjct:  216 LDVLNRMLLVAPDANAELRDRGIVYQRLECYRAALKDLSDYVEREPDAPDSDDVRVRLMELSALCARLN 284
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BLAST of mRNA_P-wetherbeei_contig18043.1.1 vs. uniprot
Match: A0A537DPX4_9PROT (Tetratricopeptide repeat protein n=4 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537DPX4_9PROT)

HSP 1 Score: 100 bits (250), Expect = 2.520e-24
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 LDVINRMIVVAPDAHGELRDRGDVYRGMEAFRAALRDFSAYLEREPDAPDADEVRAKVVELTALCARLN 207
            L+V+NRM+VVAPDA  ELRDRG VYR +E +R AL+D S Y+EREP+APD D+VR K++EL+ALCARLN
Sbjct:  216 LEVLNRMLVVAPDASSELRDRGYVYRRLECWRPALKDLSDYVEREPEAPDLDDVRVKLMELSALCARLN 284
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BLAST of mRNA_P-wetherbeei_contig18043.1.1 vs. uniprot
Match: A0A521YXD3_9PROT (Tetratricopeptide repeat protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YXD3_9PROT)

HSP 1 Score: 96.7 bits (239), Expect = 1.020e-22
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    1 LDVINRMIVVAPDAHGELRDRGDVYRGMEAFRAALRDFSAYLEREPDAPDADEVRAKVVELTALCARLN 207
            L+V+NRM+V++P+A  ELRDRG VY  +E +R AL+D + YLEREPDAPD  EVR +++ELTALCARLN
Sbjct:  214 LEVLNRMLVLSPEASAELRDRGYVYERLECWRPALKDLTEYLEREPDAPDVSEVRVRLMELTALCARLN 282
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BLAST of mRNA_P-wetherbeei_contig18043.1.1 vs. uniprot
Match: A0A536YEM5_9PROT (Tetratricopeptide repeat protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YEM5_9PROT)

HSP 1 Score: 94.4 bits (233), Expect = 8.040e-22
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    1 LDVINRMIVVAPDAHGELRDRGDVYRGMEAFRAALRDFSAYLEREPDAPDADEVRAKVVELTALCARLN 207
            L V+NRM++VAPDA  ELRDRG VY+ +E +RAAL+D S YLEREP A D DEVRA+++E++A CARLN
Sbjct:  216 LAVLNRMLLVAPDAPAELRDRGIVYQRLECYRAALKDLSDYLEREPQASDLDEVRARLMEVSARCARLN 284
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BLAST of mRNA_P-wetherbeei_contig18043.1.1 vs. uniprot
Match: A0A1F4F470_9PROT (Transglut_core2 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F470_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 4.360e-21
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 LDVINRMIVVAPDAHGELRDRGDVYRGMEAFRAALRDFSAYLEREPDAPDADEVRAKVVELTALCARLN 207
            L+V+NRM++VAP+A  ELRDRG +Y+ +E +R AL+D   Y+ REP APDA+EVRAK+ ELT LCARLN
Sbjct:  216 LEVLNRMLLVAPEASAELRDRGFLYQRLECWRPALQDLKDYVGREPGAPDAEEVRAKLAELTTLCARLN 284
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BLAST of mRNA_P-wetherbeei_contig18043.1.1 vs. uniprot
Match: A0A536SII5_9PROT (Tetratricopeptide repeat protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SII5_9PROT)

HSP 1 Score: 92.4 bits (228), Expect = 4.360e-21
Identity = 42/69 (60.87%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 LDVINRMIVVAPDAHGELRDRGDVYRGMEAFRAALRDFSAYLEREPDAPDADEVRAKVVELTALCARLN 207
            L V+NRM++VAPDA  ELRDRG VY  +E +RAAL+D S Y+EREP+A D DEVR +++E+++ CARLN
Sbjct:  216 LAVLNRMVIVAPDATAELRDRGIVYHRLECYRAALKDLSDYIEREPNAADVDEVRVRLMEVSSRCARLN 284
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BLAST of mRNA_P-wetherbeei_contig18043.1.1 vs. uniprot
Match: A0A521VVJ9_9PROT (Tetratricopeptide repeat protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VVJ9_9PROT)

HSP 1 Score: 91.7 bits (226), Expect = 8.430e-21
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 LDVINRMIVVAPDAHGELRDRGDVYRGMEAFRAALRDFSAYLEREPDAPDADEVRAKVVELTALCARLN 207
            L+V+NR +VVAP+A  +LRDRG VY  +E +RAALRD S Y+ REP+A D  ++RA+V+ELTALCARLN
Sbjct:  215 LEVLNRALVVAPEATADLRDRGLVYHRLECYRAALRDLSDYVAREPEAIDTADIRARVIELTALCARLN 283
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BLAST of mRNA_P-wetherbeei_contig18043.1.1 vs. uniprot
Match: A0A1F4EWB4_9PROT (Transglut_core2 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4EWB4_9PROT)

HSP 1 Score: 90.5 bits (223), Expect = 2.280e-20
Identity = 42/69 (60.87%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 LDVINRMIVVAPDAHGELRDRGDVYRGMEAFRAALRDFSAYLEREPDAPDADEVRAKVVELTALCARLN 207
            L+V+NRM++V+P+A  ELRDRG VY  +E +R AL+D + Y+ REPDAPDA EVR K++EL+A CARLN
Sbjct:  214 LEVLNRMLLVSPEASAELRDRGYVYERLECWRPALQDLTDYVGREPDAPDAHEVRVKLMELSARCARLN 282
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BLAST of mRNA_P-wetherbeei_contig18043.1.1 vs. uniprot
Match: UPI0019B6690C (Tetratricopeptide repeat protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019B6690C)

HSP 1 Score: 89.0 bits (219), Expect = 8.670e-20
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 LDVINRMIVVAPDAHGELRDRGDVYRGMEAFRAALRDFSAYLEREPDAPDADEVRAKVVELTALCARLN 207
            L V+NR++VVAPD   ELRDRG VY+ +E +R AL+D S YL+REP APD +EVRA++ EL+  CARLN
Sbjct:  213 LAVLNRLVVVAPDTAAELRDRGFVYQRLECWRPALQDLSDYLQREPRAPDQNEVRARIAELSLRCARLN 281
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18043.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A177QZE8_9PROT2.100e-2671.01Transglut_core2 domain-containing protein n=1 Tax=... [more]
A0A1F4CR98_9PROT1.180e-2568.12Transglut_core2 domain-containing protein n=1 Tax=... [more]
A0A537DPX4_9PROT2.520e-2468.12Tetratricopeptide repeat protein n=4 Tax=Betaprote... [more]
A0A521YXD3_9PROT1.020e-2263.77Tetratricopeptide repeat protein n=1 Tax=Betaprote... [more]
A0A536YEM5_9PROT8.040e-2265.22Tetratricopeptide repeat protein n=2 Tax=Betaprote... [more]
A0A1F4F470_9PROT4.360e-2162.32Transglut_core2 domain-containing protein n=1 Tax=... [more]
A0A536SII5_9PROT4.360e-2160.87Tetratricopeptide repeat protein n=1 Tax=Betaprote... [more]
A0A521VVJ9_9PROT8.430e-2162.32Tetratricopeptide repeat protein n=2 Tax=Betaprote... [more]
A0A1F4EWB4_9PROT2.280e-2060.87Transglut_core2 domain-containing protein n=1 Tax=... [more]
UPI0019B6690C8.670e-2060.87Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18043contigP-wetherbeei_contig18043:14..223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog266264.Rmet_2906
PFAMsTPR_9,Transglut_core2
Model size210
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.23e-08
EggNOG OGsCOG2912@1|root,COG2912@2|Bacteria,1MVJQ@1224|Proteobacteria,2VMIR@28216|Betaproteobacteria,1K17Z@119060|Burkholderiaceae
DescriptionTransglutaminase-like superfamily
Cds size192
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.5196328-UTR-P-wetherbeei_contig18043:13..311683186134.5196328-UTR-P-wetherbeei_contig18043:13..31Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18043 14..31 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.5286338-CDS-P-wetherbeei_contig18043:31..2231683186134.5286338-CDS-P-wetherbeei_contig18043:31..223Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18043 32..223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18043.1.1prot_P-wetherbeei_contig18043.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18043 32..223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18043.1.1

>prot_P-wetherbeei_contig18043.1.1 ID=prot_P-wetherbeei_contig18043.1.1|Name=mRNA_P-wetherbeei_contig18043.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
MIVVAPDAHGELRDRGDVYRGMEAFRAALRDFSAYLEREPDAPDADEVRA
KVVELTALCARLN*
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mRNA from alignment at P-wetherbeei_contig18043:14..223+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18043.1.1 ID=mRNA_P-wetherbeei_contig18043.1.1|Name=mRNA_P-wetherbeei_contig18043.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig18043:14..223+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGACGTCATCAACCGGATGATCGTGGTCGCGCCCGACGCGCACGGCGA
ACTGCGTGACCGCGGCGACGTGTACCGGGGCATGGAGGCGTTTCGCGCGG
CGCTGCGGGATTTCAGCGCTTATCTCGAGCGCGAACCCGACGCGCCCGAC
GCCGACGAGGTCCGGGCGAAAGTGGTCGAGCTCACTGCGCTCTGCGCGCG
ACTGAACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18043:14..223+

>mRNA_P-wetherbeei_contig18043.1.1 ID=mRNA_P-wetherbeei_contig18043.1.1|Name=mRNA_P-wetherbeei_contig18043.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig18043:14..223+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGTGGTCGCGCCCGACGCGCACGGCGAACTGCGTGACCGCGGCGA
CGTGTACCGGGGCATGGAGGCGTTTCGCGCGGCGCTGCGGGATTTCAGCG
CTTATCTCGAGCGCGAACCCGACGCGCCCGACGCCGACGAGGTCCGGGCG
AAAGTGGTCGAGCTCACTGCGCTCTGCGCGCGACTGAACTGA
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