mRNA_P-wetherbeei_contig18042.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18042.1.1
Unique NamemRNA_P-wetherbeei_contig18042.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18042.1.1 vs. uniprot
Match: A0A3C0TXR7_9PROT (3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TXR7_9PROT)

HSP 1 Score: 163 bits (413), Expect = 8.210e-49
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:    1 PGQALLYRLSGDRNPLHADPEVGRKAGFDRPILHGLCTYGTTCRAIIQNVCDYDAAKITGFDVRFSSPVIPGETIVVDA 237
            PGQALLYRLSGDRNPLHADP+V R+AGFDRPILHGLCTYGTTCRAIIQNVCDYDA KITGFDVRFSSPV+PGETIVVDA
Sbjct:  182 PGQALLYRLSGDRNPLHADPQVARRAGFDRPILHGLCTYGTTCRAIIQNVCDYDATKITGFDVRFSSPVMPGETIVVDA 260
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BLAST of mRNA_P-wetherbeei_contig18042.1.1 vs. uniprot
Match: A0A351T5E8_9PROT (3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T5E8_9PROT)

HSP 1 Score: 157 bits (397), Expect = 4.650e-46
Identity = 70/80 (87.50%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    1 PGQALLYRLSGDRNPLHADPEVGRKAGFDRPILHGLCTYGTTCRAIIQNVCDYDAAKITGFDVRFSSPVIPGETIVVDAW 240
            PGQALLYRL GDRNPLHADP V + AGF+RPILHGLCTYGTTCRAIIQNVC YDA KITGFDVRFSSPVIPGETI+VD W
Sbjct:  181 PGQALLYRLCGDRNPLHADPAVAKAAGFERPILHGLCTYGTTCRAIIQNVCGYDATKITGFDVRFSSPVIPGETIIVDTW 260
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BLAST of mRNA_P-wetherbeei_contig18042.1.1 vs. uniprot
Match: A0A081BC49_9HYPH (3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081BC49_9HYPH)

HSP 1 Score: 149 bits (377), Expect = 4.080e-43
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 PGQALLYRLSGDRNPLHADPEVGRKAGFDRPILHGLCTYGTTCRAIIQNVCDYDAAKITGFDVRFSSPVIPGETIVVDAW 240
            P QALLYRLSGDRNPLHADPEV + AGF  PILHGLCTYGT CRAII +VCDYDA+KITGFDVRFSSPV PGETI+VD W
Sbjct:  176 PDQALLYRLSGDRNPLHADPEVAKMAGFPAPILHGLCTYGTCCRAIISSVCDYDASKITGFDVRFSSPVFPGETILVDIW 255
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BLAST of mRNA_P-wetherbeei_contig18042.1.1 vs. uniprot
Match: UPI001421B570 (MaoC family dehydratase N-terminal domain-containing protein n=1 Tax=Parvibaculum indicum TaxID=562969 RepID=UPI001421B570)

HSP 1 Score: 146 bits (369), Expect = 6.520e-42
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:    1 PGQALLYRLSGDRNPLHADPEVGRKAGFDRPILHGLCTYGTTCRAIIQNVCDYDAAKITGFDVRFSSPVIPGETIVVDAW 240
            P QALLYRLSGDRNPLH+DPE  +  GFD+PILHGLCTYGT CRAII +VCDYDAAKITGFDVRFS+PVIPG+ I VD W
Sbjct:  175 PDQALLYRLSGDRNPLHSDPEFAKAVGFDKPILHGLCTYGTCCRAIISSVCDYDAAKITGFDVRFSAPVIPGDKIAVDLW 254
[Close]
BLAST of mRNA_P-wetherbeei_contig18042.1.1 vs. uniprot
Match: A0A2A5EPQ9_9HYPH (3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5EPQ9_9HYPH)

HSP 1 Score: 144 bits (364), Expect = 3.770e-41
Identity = 64/80 (80.00%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    1 PGQALLYRLSGDRNPLHADPEVGRKAGFDRPILHGLCTYGTTCRAIIQNVCDYDAAKITGFDVRFSSPVIPGETIVVDAW 240
            PGQALLYRLSGDRNPLHADPE  +  GF  PILHGLCTYGT CRAII N CDYD  +ITGFDVRFSSPV PGETI VD W
Sbjct:  176 PGQALLYRLSGDRNPLHADPEFAKAVGFPAPILHGLCTYGTCCRAIISNACDYDPKQITGFDVRFSSPVYPGETITVDTW 255
[Close]
BLAST of mRNA_P-wetherbeei_contig18042.1.1 vs. uniprot
Match: A0A2N3EEW3_9PROT (3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3EEW3_9PROT)

HSP 1 Score: 140 bits (354), Expect = 1.170e-39
Identity = 62/80 (77.50%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    1 PGQALLYRLSGDRNPLHADPEVGRKAGFDRPILHGLCTYGTTCRAIIQNVCDYDAAKITGFDVRFSSPVIPGETIVVDAW 240
            PGQALLYRLSGDRNPLH+DPE  +  GF RPILHGLCTYGT CRAII +  DYD  KITGFDVRFS+PV PGETI VD W
Sbjct:  175 PGQALLYRLSGDRNPLHSDPEFAKAVGFPRPILHGLCTYGTCCRAIISSALDYDPTKITGFDVRFSAPVFPGETITVDMW 254
[Close]
BLAST of mRNA_P-wetherbeei_contig18042.1.1 vs. uniprot
Match: A0A2Z4UQX3_9HYPH (MaoC like domain protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2Z4UQX3_9HYPH)

HSP 1 Score: 140 bits (353), Expect = 1.690e-39
Identity = 62/80 (77.50%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    1 PGQALLYRLSGDRNPLHADPEVGRKAGFDRPILHGLCTYGTTCRAIIQNVCDYDAAKITGFDVRFSSPVIPGETIVVDAW 240
            P QALLYRLSGDRNPLHADPE  +  GF  PI+HGLCTYGT CRAII NVCDYD  +I GFDVRFSSPV PGETI VD W
Sbjct:  176 PDQALLYRLSGDRNPLHADPEFAKAVGFPAPIIHGLCTYGTCCRAIITNVCDYDPKQIVGFDVRFSSPVYPGETITVDTW 255
[Close]
BLAST of mRNA_P-wetherbeei_contig18042.1.1 vs. uniprot
Match: A0A7C8LWP9_9CAUL (3-alpha 7-alpha 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7C8LWP9_9CAUL)

HSP 1 Score: 139 bits (349), Expect = 6.910e-39
Identity = 60/80 (75.00%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    1 PGQALLYRLSGDRNPLHADPEVGRKAGFDRPILHGLCTYGTTCRAIIQNVCDYDAAKITGFDVRFSSPVIPGETIVVDAW 240
            P QAL+YRLSGDRNPLHADP + + AGFDRPILHGLCTYG TCRA++Q  CDYD  KI G DVRFSSPV PGETIV   W
Sbjct:  176 PNQALIYRLSGDRNPLHADPALAKAAGFDRPILHGLCTYGITCRAVLQTYCDYDPTKIVGHDVRFSSPVFPGETIVTRMW 255
[Close]
BLAST of mRNA_P-wetherbeei_contig18042.1.1 vs. uniprot
Match: A0A8I1RKI8_9PROT (MaoC family dehydratase N-terminal domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A8I1RKI8_9PROT)

HSP 1 Score: 138 bits (347), Expect = 1.350e-38
Identity = 60/80 (75.00%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    1 PGQALLYRLSGDRNPLHADPEVGRKAGFDRPILHGLCTYGTTCRAIIQNVCDYDAAKITGFDVRFSSPVIPGETIVVDAW 240
            P QA +Y LSGDRNPLH DP V + AGF RPILHGLCTYGT CRA+I +VC YDA KITGFDVRFSSPV PGETIV + W
Sbjct:  177 PDQAFIYALSGDRNPLHRDPNVAKMAGFPRPILHGLCTYGTACRAVISSVCKYDAQKITGFDVRFSSPVFPGETIVTEMW 256
[Close]
BLAST of mRNA_P-wetherbeei_contig18042.1.1 vs. uniprot
Match: A0A2N3E0K9_9PROT (3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase (Fragment) n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3E0K9_9PROT)

HSP 1 Score: 133 bits (335), Expect = 3.260e-38
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:    1 PGQALLYRLSGDRNPLHADPEVGRKAGFDRPILHGLCTYGTTCRAIIQNVCDYDAAKITGFDVRFSSPVIPGETIVVDAW 240
            P QALLYRLSGDRNPLH+DPE  +  GF +PILHGLCTYGT CRAII    DYD  +ITGFDVRFS+PV PG+T+ VD W
Sbjct:   54 PDQALLYRLSGDRNPLHSDPEFAKAVGFPKPILHGLCTYGTCCRAIISGALDYDPTQITGFDVRFSAPVFPGDTVTVDIW 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18042.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TXR7_9PROT8.210e-4993.673-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-choles... [more]
A0A351T5E8_9PROT4.650e-4687.503-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-choles... [more]
A0A081BC49_9HYPH4.080e-4383.753-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-choles... [more]
UPI001421B5706.520e-4280.00MaoC family dehydratase N-terminal domain-containi... [more]
A0A2A5EPQ9_9HYPH3.770e-4180.003-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-choles... [more]
A0A2N3EEW3_9PROT1.170e-3977.503-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-choles... [more]
A0A2Z4UQX3_9HYPH1.690e-3977.50MaoC like domain protein n=2 Tax=Hyphomicrobiales ... [more]
A0A7C8LWP9_9CAUL6.910e-3975.003-alpha 7-alpha 12-alpha-trihydroxy-5-beta-cholest... [more]
A0A8I1RKI8_9PROT1.350e-3875.00MaoC family dehydratase N-terminal domain-containi... [more]
A0A2N3E0K9_9PROT3.260e-3871.253-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-choles... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18042contigP-wetherbeei_contig18042:1..240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1333998.M2A_2116
Preferred nameMA20_35600
PFAMsMaoC_dehydrat_N,MaoC_dehydratas
Model size240
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.69e-44
EggNOG OGsCOG2030@1|root,COG2030@2|Bacteria,1MUR2@1224|Proteobacteria,2TUM7@28211|Alphaproteobacteria
Descriptiondehydratase
Cds size240
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.467822-CDS-P-wetherbeei_contig18042:0..2401683186134.467822-CDS-P-wetherbeei_contig18042:0..240Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18042 1..240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18042.1.1prot_P-wetherbeei_contig18042.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18042 1..240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18042.1.1

>prot_P-wetherbeei_contig18042.1.1 ID=prot_P-wetherbeei_contig18042.1.1|Name=mRNA_P-wetherbeei_contig18042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
PGQALLYRLSGDRNPLHADPEVGRKAGFDRPILHGLCTYGTTCRAIIQNV
CDYDAAKITGFDVRFSSPVIPGETIVVDAW
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mRNA from alignment at P-wetherbeei_contig18042:1..240+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18042.1.1 ID=mRNA_P-wetherbeei_contig18042.1.1|Name=mRNA_P-wetherbeei_contig18042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig18042:1..240+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGGCCAGGCGTTATTGTACCGTTTGTCGGGCGACCGCAATCCGCTGCA
TGCGGATCCGGAAGTGGGCCGCAAGGCGGGCTTTGACCGCCCGATCCTGC
ACGGGCTGTGCACCTATGGCACCACCTGCCGCGCCATCATCCAGAATGTC
TGCGATTATGACGCCGCCAAAATCACTGGCTTTGACGTGCGCTTTTCATC
GCCCGTAATCCCCGGCGAAACCATTGTGGTGGACGCCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18042:1..240+

>mRNA_P-wetherbeei_contig18042.1.1 ID=mRNA_P-wetherbeei_contig18042.1.1|Name=mRNA_P-wetherbeei_contig18042.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig18042:1..240+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGGCCAGGCGTTATTGTACCGTTTGTCGGGCGACCGCAATCCGCTGCA
TGCGGATCCGGAAGTGGGCCGCAAGGCGGGCTTTGACCGCCCGATCCTGC
ACGGGCTGTGCACCTATGGCACCACCTGCCGCGCCATCATCCAGAATGTC
TGCGATTATGACGCCGCCAAAATCACTGGCTTTGACGTGCGCTTTTCATC
GCCCGTAATCCCCGGCGAAACCATTGTGGTGGACGCCTGG
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