mRNA_P-wetherbeei_contig18041.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18041.1.1
Unique NamemRNA_P-wetherbeei_contig18041.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18041.1.1 vs. uniprot
Match: D8LTE3_ECTSI (Shikimate dehydrogenase (NADP(+)) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE3_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 4.720e-112
Identity = 171/258 (66.28%), Postives = 198/258 (76.74%), Query Frame = 1
Query:    1 SLTFPDMSAQAALLPQLCDGADAMELRVDLLAERDDPIAVLRQLQLLRASTARRPVIFTVRSKGQCGAFPDDADAIFELARQAIGGWGLRGGVEYLDIEANWPMEHRAALIAEARRHYPATALIGSYHVMGRATSEERAKELFLECYHNGAVDAVKVVTTAMVPEDGFRVHHAAQALRLPVPYIGLCLTATGQLSRVLNRRFTPVTHGRLPAMAAPGQMTAEHIMKLRKELAIVPPRRFFLFGSPIAASPRPDMQPAG 774
            SLTF D S    LLP L +G DAMELRVDLLA+ +DP  VLRQL +LR  T   PV+FT+RSKGQCGAFPDD + IF LAR     WGLR G E +D+EANWPM +R  LI EA  +YP   L+GSYHV+GR T+EE+AKELF+ECYH+GAVD VKVVTTA  PED  RVH AA++L LPVPYIGLCLT TG+LSRVLN+RFTPVTH  LP +AAPGQM+++ IM  R EL + PPR FFLFGSPI+ASP PDM  AG
Sbjct:  186 SLTFEDFSLHTDLLPTLTEGVDAMELRVDLLADNEDPYTVLRQLSILRRHTGYLPVVFTIRSKGQCGAFPDDPEKIFRLAR-----WGLRAGCEVMDVEANWPMSYREGLIREAGENYPGAVLVGSYHVVGRKTTEEQAKELFMECYHDGAVDGVKVVTTAFEPEDSIRVHAAAKSLALPVPYIGLCLTETGKLSRVLNKRFTPVTHENLPFVAAPGQMSSKEIMHHRAELGLCPPRSFFLFGSPISASPSPDMHNAG 438          
BLAST of mRNA_P-wetherbeei_contig18041.1.1 vs. uniprot
Match: A0A836CDF8_9STRA (Type I 3-dehydroquinase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF8_9STRA)

HSP 1 Score: 289 bits (740), Expect = 1.330e-92
Identity = 146/235 (62.13%), Postives = 185/235 (78.72%), Query Frame = 1
Query:   70 MELRVDLLAERDDPIAVLRQLQLLRASTARRPVIFTVRSKGQCGAFPDDADAIFELARQAIGGWGLRGGVEYLDIEANWPMEHRAALIAEARRHYPATALIGSYHVMGRATSEERAKELFLECYHNGAVDAVKVVTTAMVPEDGFRVHHAAQALRLPVPYIGLCLTATGQLSRVLNRRFTPVTHGRLPAMAAPGQMTAEHIMKLRKELAIVPPRRFFLFGSPIAASPRPDMQPAG 774
            MEL VDLL+++  P AVL QLQLLR  T R PVIFT+RSKGQCGAF DD  A+F+L +     WGLRGGVEYLDIEANW     A +I  A+ HYPAT L+GSYHV+G+ T+E +A++L+  CYH G VDAVKVVTTA+  +D +RVH AA++L LPVP+IGLCLT TG LSRVLN RFTPVTH +LP++AAPGQ+T+E IM+LR++L ++ P++F+LFG+PI+ASP P M  +G
Sbjct:    1 MELHVDLLSDQR-PHAVLAQLQLLRRHTGRLPVIFTIRSKGQCGAFADDPVAMFDLLK-----WGLRGGVEYLDIEANWG----ARMIGLAKAHYPATVLMGSYHVVGKKTTEAQARKLYKRCYHRGQVDAVKVVTTAIEHQDSYRVHQAAESLALPVPHIGLCLTPTGSLSRVLNMRFTPVTHAKLPSVAAPGQLTSEAIMRLRQDLGMLQPKQFYLFGAPISASPSPAMHNSG 225          
BLAST of mRNA_P-wetherbeei_contig18041.1.1 vs. uniprot
Match: A0A7S2V1R3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1R3_9STRA)

HSP 1 Score: 279 bits (713), Expect = 1.140e-85
Identity = 138/254 (54.33%), Postives = 185/254 (72.83%), Query Frame = 1
Query:    1 SLTFPDMSAQAALLPQLCDGADAMELRVDLLAERDDPIAVLRQLQLLRASTARRPVIFTVRSKGQCGAFPDDADAIFELARQAIGGWGLRGGVEYLDIEANWPMEHRAALIAEARRHYPATALIGSYHVMGRATSEERAKELFLECYHNGAVDAVKVVTTAMVPEDGFRVHHAAQALRLPVPYIGLCLTATGQLSRVLNRRFTPVTHGRLPAMAAPGQMTAEHIMKLRKELAIVPPRRFFLFGSPIAASPRPDM 762
            SLTFPD++    +LP++ +G+DA+ELRVD+L  RDDP+ VL Q+++LR  T + PVI+TVR+ GQCG +PD+   +F L        GLRGG+EYLDIEA W  E+RA L+  ++  YP+T ++ S+HV+G+++S E  ++LF EC  +G VD VKVV TA+  +D +RVH  AQ++ LPVPYIGLCLT  GQLSRVLN RFTPVTH  LP MAAPGQ++ + IM  R +L I PP+ FFL G+PI+ASP P M
Sbjct:  220 SLTFPDITDSVDILPEVVEGSDAVELRVDMLQGRDDPLEVLYQMRVLRHHT-QLPVIYTVRTLGQCGTYPDEPGRVFPLLHS-----GLRGGLEYLDIEACWQEEYRAPLLEASKADYPSTVVLSSHHVVGKSSSTEETQQLFEECLMDGRVDGVKVVLTAVESDDSWRVHSVAQSMNLPVPYIGLCLTPKGQLSRVLNPRFTPVTHPSLPVMAAPGQLSVKEIMDFRAKLGITPPKSFFLLGTPISASPSPAM 467          
BLAST of mRNA_P-wetherbeei_contig18041.1.1 vs. uniprot
Match: W7TUF9_9STRA (Pentafunctional arom polypeptide n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUF9_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.090e-72
Identity = 141/260 (54.23%), Postives = 175/260 (67.31%), Query Frame = 1
Query:    1 SLTFPDMSAQAALLPQLCDGADAMELRVDLLAERDDPIAVLRQLQLLRASTARRPVIFTVRSKGQCGAFPDDADAIFELARQAIGGWGLRGGVEYLDIEANWPMEHRAALIAEARRHYPATA-LIGSYHVMGRATSEERAKELFLECYHNGAVDAVKVVTTAMVPEDGFRVHHAAQALRLP--VPYIGLCLTATGQLSRVLNRRFTPVTHGRLPAMAAPGQMTAEHIMKLRKELAIVPPRRFFLFGSPIAASPRPDMQPA 771
            SLTFPD+     LLP L  G DA+ELRVDLL ++  P  +LRQ+ +L+++T R PVIFTVRS+ QCGAFP++  AIF+L        GLR GVE LD+EA W  + R +L+ EA R Y  T  L+GSYHV+GR   +  A E+F ECYH+G VDAVKVV TA    D +RVH  A A  LP  +P + LCL   G+LSRVLN R+TPVT   LP +AAPGQ+TAE IM+LR++L +VP   F L GSPIA SP P M  A
Sbjct:  246 SLTFPDVRECLPLLPGLERGVDALELRVDLLRDKT-PWDILRQVAILKSAT-RLPVIFTVRSQDQCGAFPNEPAAIFDLLAL-----GLRAGVEVLDVEACWDRKARESLLTEAWRGYRGTTRLLGSYHVVGRRVPDREALEIFQECYHDGRVDAVKVVLTAHSVRDTYRVHELAAAAGLPPSLPVVALCLGEVGKLSRVLNSRYTPVTSKLLPYVAAPGQLTAEEIMRLRQDLGMVPTSSFCLLGSPIAQSPSPAMHTA 498          
BLAST of mRNA_P-wetherbeei_contig18041.1.1 vs. uniprot
Match: A0A5D6XVW7_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVW7_9STRA)

HSP 1 Score: 223 bits (568), Expect = 6.840e-63
Identity = 129/262 (49.24%), Postives = 164/262 (62.60%), Query Frame = 1
Query:    1 SLTFPDMSAQAALLPQLCDGADAMELRVDLLAERDDPIAVLRQLQLLRASTARRPVIFTVRSKGQCGAFPDDAD-AIFELARQAIGGWGLRGGVEYLDIEANWPMEHRAALIAEARRHYPATALIGSYHVMGRATSEERAKELFLECYHNGAVDAVKVVTTAMVPEDGFRVHHAAQ----ALRLPVPYIGLCLTATGQLSRVLNRRFTPVTHGRLPAMAAPGQMTAEHIMKLRKELAIVPPRRFFLFGSPIAASPRPDMQPA 771
            SLTFPDMSA  A++ ++  G DA+ELRVDLLA  DD  AV  Q+ LLRA +   P+IFTVRS+GQ GAFPDD +  +F L        G+R G E++D+E  W    RA L+A  RR    +A+I S+H + + TSE   K +F EC+  G V+ VKVV  A  P+D   VH  A     A R  VP + LC T  G+L+RVLNR  TPVTH  LPA AAPGQ++   I+ LR++L ++P R FFLFGSPI  SP P M  A
Sbjct: 1261 SLTFPDMSAARAIMAEISAGVDALELRVDLLAAFDDAAAVAAQVALLRALSPL-PIIFTVRSRGQGGAFPDDDEPGMFRLLAL-----GVRLGCEFVDVETCWSRAARAQLLAARRR----SAVISSFHAVQQPTSEADVKAIFRECHEQGRVEVVKVVVKAFAPQDALMVHRLATEFAAAWRHEVPIVALCTTDAGKLTRVLNRVLTPVTHPLLPAAAAPGQLSVAEILSLRQQLGLLPAREFFLFGSPIRQSPSPAMHNA 1512          
BLAST of mRNA_P-wetherbeei_contig18041.1.1 vs. uniprot
Match: W2FV38_PHYPR (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2FV38_PHYPR)

HSP 1 Score: 213 bits (542), Expect = 9.090e-60
Identity = 125/265 (47.17%), Postives = 160/265 (60.38%), Query Frame = 1
Query:    1 SLTFPDMSAQAALLPQLCDGADAMELRVDLLAERDDPIAVLRQLQLLRASTARRPVIFTVRSKGQCGAFPDDAD---AIFELARQAIGGWGLRGGVEYLDIEANWPMEHRAALIAEARRHYPATALIGSYHVMGRATSEERAKELFLECYHNGAVDAVKVVTTAMVPEDGFRVHHAAQ----ALRLPVPYIGLCLTATGQLSRVLNRRFTPVTHGRLPAMAAPGQMTAEHIMKLRKELAIVPPRRFFLFGSPIAASPRPDMQPAG 774
            SLTFPD++   +L+  +  GADA+ELRVDLL   +D   V  Q+ LLR S +  P+IFTVRSKGQ GAFPD  +    +FEL +      G+R G E++D+E  W  + R  L+    R    +A+I S+H + + TSE   K +F ECY  G V  VKVV  A  P D   V   A+    A +  +P I LC T  G+L+RVLNR  TPVTH  LPA AAPGQ++ E IM LRK+L ++P R FFLFGSPI  SP P M  AG
Sbjct:  443 SLTFPDVNDARSLISDISKGADALELRVDLLKNPEDTKFVAAQVALLR-SLSTLPIIFTVRSKGQGGAFPDGEEHEQKMFELLQL-----GVRLGCEFIDMETCWSRKAREQLLTHRHR----SAIISSFHAVQKPTSEAETKAIFRECYSQGRVQIVKVVVKAYSPADALMVDRVAKDFATAWQQQMPIISLCTTEAGKLTRVLNRTLTPVTHPMLPAAAAPGQLSVEEIMTLRKQLGLLPAREFFLFGSPIQKSPSPAMHNAG 697          
BLAST of mRNA_P-wetherbeei_contig18041.1.1 vs. uniprot
Match: M4BYJ7_HYAAE (Pentafunctional AROM polypeptide n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYJ7_HYAAE)

HSP 1 Score: 212 bits (540), Expect = 3.820e-59
Identity = 126/265 (47.55%), Postives = 163/265 (61.51%), Query Frame = 1
Query:    1 SLTFPDMSAQAALLPQLCDGADAMELRVDLLAERDDPIAVLRQLQLLRASTARRPVIFTVRSKGQCGAFPDDAD---AIFELARQAIGGWGLRGGVEYLDIEANWPMEHRAALIAEARRHYPATALIGSYHVMGRATSEERAKELFLECYHNGAVDAVKVVTTAMVPEDGFRVHHAAQ----ALRLPVPYIGLCLTATGQLSRVLNRRFTPVTHGRLPAMAAPGQMTAEHIMKLRKELAIVPPRRFFLFGSPIAASPRPDMQPAG 774
            SLTFPD++    ++  +    DA+ELRVDLL   +D   V  Q+ LLR S +  P+IFTVRSKGQ GAFPD  +    +FEL R      G+R G E++D+E  W  + R  L+A   R    +A+I S+H + + TSE + K +F ECY  G V  VKVV  A  PED   V H A+    A +  +P I LC T TG+L+RVLNR  TPVTH  LPA+AAPGQ++ E IM LRK+L ++P R F+LFGSPI  SP P M  AG
Sbjct: 1026 SLTFPDVNDARPIIDDISKDVDALELRVDLLQFPEDVKFVAAQVALLR-SLSTLPIIFTVRSKGQGGAFPDGEEHEQKMFELLRL-----GVRLGCEFVDMETCWSPKAREQLMAGRHR----SAIISSFHAVQKPTSEAKIKTIFRECYSEGKVQIVKVVVKAYSPEDALTVSHVAKHFAHAWQQQMPIISLCTTDTGKLTRVLNRTLTPVTHPLLPAVAAPGQLSVEEIMILRKQLGLLPAREFYLFGSPIQNSPSPAMHNAG 1280          
BLAST of mRNA_P-wetherbeei_contig18041.1.1 vs. uniprot
Match: H3GHV1_PHYRM (Pentafunctional AROM polypeptide n=20 Tax=Phytophthora TaxID=4783 RepID=H3GHV1_PHYRM)

HSP 1 Score: 209 bits (532), Expect = 4.510e-58
Identity = 125/265 (47.17%), Postives = 160/265 (60.38%), Query Frame = 1
Query:    1 SLTFPDMSAQAALLPQLCDGADAMELRVDLLAERDDPIAVLRQLQLLRASTARRPVIFTVRSKGQCGAFPDDAD---AIFELARQAIGGWGLRGGVEYLDIEANWPMEHRAALIAEARRHYPATALIGSYHVMGRATSEERAKELFLECYHNGAVDAVKVVTTAMVPEDGFRVHHAAQ----ALRLPVPYIGLCLTATGQLSRVLNRRFTPVTHGRLPAMAAPGQMTAEHIMKLRKELAIVPPRRFFLFGSPIAASPRPDMQPAG 774
            SLTFPDM+    ++  +  GADA+ELRVDLL    D   V  Q+ LLR  ++  P+IFTVRSKGQ GAFPD  +    +FEL +      G+R G E++D+E  W  + R  L+A   R    +A+I S+H + + TSE   K +F ECY  G V  VKVV  A  P+D   V   A+    A +  +P I LC T  G+L+RVLNR  TPVTH  LPA AAPGQ++ E IM LRK+L ++P R FFLFGSPI  SP P M  AG
Sbjct: 1022 SLTFPDMNDARPIISDISKGADALELRVDLLKYPQDTKFVAAQVALLRTLSSL-PIIFTVRSKGQGGAFPDGEENELKMFELLQL-----GVRLGCEFVDMETCWSRKAREHLLAHRYR----SAIISSFHAVQKPTSEAETKLIFRECYSQGRVQIVKVVVKAYSPQDALMVDRVAKDFANAWQQQMPIISLCTTEAGKLTRVLNRTLTPVTHPLLPAAAAPGQLSIEEIMILRKQLGLLPAREFFLFGSPIQKSPSPAMHNAG 1276          
BLAST of mRNA_P-wetherbeei_contig18041.1.1 vs. uniprot
Match: K3X4S6_GLOUD (Pentafunctional AROM polypeptide n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4S6_GLOUD)

HSP 1 Score: 204 bits (519), Expect = 2.490e-56
Identity = 119/262 (45.42%), Postives = 158/262 (60.31%), Query Frame = 1
Query:    1 SLTFPDMSAQAALLPQLCDGADAMELRVDLLAERDDPIAVLRQLQLLRASTARRPVIFTVRSKGQCGAFPDDADA-IFELARQAIGGWGLRGGVEYLDIEANWPMEHRAALIAEARRHYPATALIGSYHVMGRATSEERAKELFLECYHNGAVDAVKVVTTAMVPEDGFRVHHAAQAL----RLPVPYIGLCLTATGQLSRVLNRRFTPVTHGRLPAMAAPGQMTAEHIMKLRKELAIVPPRRFFLFGSPIAASPRPDMQPA 771
            SLTFPD++    L+  +  G DA+ELRVDLL    D   +  Q+ LLR S +  P+IFTVRS+ Q GAFPDD +A +F+L   A+     R G E++D+E  W  + +  L+A  RR    +A+I S+H +   TSE +AK +F ECYH G V  VKVV  A  P+D   V   A+      +  +P I LC    G+++RVLNR  TPVTH  LPA AAPGQ++   I+ LRK+L ++P R FFLFGSPI  SP P M  A
Sbjct: 1023 SLTFPDVNDARVLIKDITKGVDALELRVDLLKSYTDINFIASQVALLR-SLSPLPIIFTVRSRAQGGAFPDDDEATMFQLLHLAV-----RLGCEFVDVETCWSRKAQDQLLASRRR----SAIISSFHAIQEPTSEAQAKAIFRECYHQGKVQVVKVVLKAFEPQDALMVDRVAKDFAKVWQHKMPIISLCTMDAGKMARVLNRVLTPVTHPLLPAAAAPGQLSVVEILTLRKQLGLLPGREFFLFGSPIQKSPSPSMHNA 1274          
BLAST of mRNA_P-wetherbeei_contig18041.1.1 vs. uniprot
Match: A0A3M6VQ13_9STRA (Pentafunctional AROM polypeptide n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VQ13_9STRA)

HSP 1 Score: 204 bits (518), Expect = 3.390e-56
Identity = 120/264 (45.45%), Postives = 157/264 (59.47%), Query Frame = 1
Query:    1 SLTFPDMSAQAALLPQLCDGADAMELRVDLLAERDDPIAVLRQLQLLRASTARRPVIFTVRSKGQCGAFPDDAD---AIFELARQAIGGWGLRGGVEYLDIEANWPMEHRAALIAEARRHYPATALIGSYHVMGRATSEERAKELFLECYHNGAVDAVKVVTTAMVPEDGFRVHHAAQALR---LPVPYIGLCLTATGQLSRVLNRRFTPVTHGRLPAMAAPGQMTAEHIMKLRKELAIVPPRRFFLFGSPIAASPRPDMQPAG 774
            SLTFPD++    ++  +  G DA+ELRVDLL   +D   V  Q+ LLRA +   PVIFTVRSK Q GAFPD  +    +FEL +      G+R G E++D+E  W  + R  L+A    H+  +A+I S+H + + TSE   + +F ECY  G V  VKVV  A  P+D   +   A+        +P I LC T  G+L+RVLNR  TPVTH  LP  AAPGQ++ E IM LRK+L ++P R FFLFGSPI  SP P M  AG
Sbjct: 1024 SLTFPDVNDARPIINDISKGVDALELRVDLLKFPEDTKFVTAQVALLRALSTL-PVIFTVRSKNQGGAFPDGEEHTQKMFELLQL-----GVRLGCEFVDMEMGWSRKAREHLMA----HHHRSAIISSFHAVQKPTSETETRAIFRECYSQGKVQIVKVVVKAYSPQDALMIDRVAKDFANAWQQMPIISLCTTEAGKLTRVLNRTLTPVTHPLLPVAAAPGQLSVEEIMTLRKQLGLLPVREFFLFGSPIQKSPSPAMHNAG 1277          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18041.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTE3_ECTSI4.720e-11266.28Shikimate dehydrogenase (NADP(+)) n=2 Tax=Ectocarp... [more]
A0A836CDF8_9STRA1.330e-9262.13Type I 3-dehydroquinase-domain-containing protein ... [more]
A0A7S2V1R3_9STRA1.140e-8554.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TUF9_9STRA1.090e-7254.23Pentafunctional arom polypeptide n=2 Tax=Monodopsi... [more]
A0A5D6XVW7_9STRA6.840e-6349.243-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
W2FV38_PHYPR9.090e-6047.173-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
M4BYJ7_HYAAE3.820e-5947.55Pentafunctional AROM polypeptide n=1 Tax=Hyalopero... [more]
H3GHV1_PHYRM4.510e-5847.17Pentafunctional AROM polypeptide n=20 Tax=Phytopht... [more]
K3X4S6_GLOUD2.490e-5645.42Pentafunctional AROM polypeptide n=1 Tax=Globispor... [more]
A0A3M6VQ13_9STRA3.390e-5645.45Pentafunctional AROM polypeptide n=1 Tax=Peronospo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18041contigP-wetherbeei_contig18041:3..1383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LTE3
PFAMsDHQ_synthase,DHquinase_I,EPSP_synthase,SKI,Shikimate_DH,Shikimate_dh_N
Model size774
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078,RC00206,RC00350,RC00847,RC00848
KEGG koko:K13830
KEGG ReactionR02412,R02413,R03083,R03084,R03460
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.73e-109
EggNOG OGsCOG0169@1|root,KOG0692@2759|Eukaryota
Ec32 ortholog descriptionBifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Ec32 orthologEc-02_006010.1
EC1.1.1.25,2.5.1.19,2.7.1.71,4.2.1.10,4.2.3.4
Descriptionshikimate 3-dehydrogenase (NADP ) activity
Cds size756
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.4167948-UTR-P-wetherbeei_contig18041:2..201683186134.4167948-UTR-P-wetherbeei_contig18041:2..20Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18041 3..20 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.4266484-CDS-P-wetherbeei_contig18041:20..2591683186134.4266484-CDS-P-wetherbeei_contig18041:20..259Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18041 21..259 +
1683186134.4349968-CDS-P-wetherbeei_contig18041:582..7931683186134.4349968-CDS-P-wetherbeei_contig18041:582..793Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18041 583..793 +
1683186134.4431255-CDS-P-wetherbeei_contig18041:1077..13831683186134.4431255-CDS-P-wetherbeei_contig18041:1077..1383Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18041 1078..1383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18041.1.1prot_P-wetherbeei_contig18041.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18041 21..1383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18041.1.1

>prot_P-wetherbeei_contig18041.1.1 ID=prot_P-wetherbeei_contig18041.1.1|Name=mRNA_P-wetherbeei_contig18041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=252bp
MSAQAALLPQLCDGADAMELRVDLLAERDDPIAVLRQLQLLRASTARRPV
IFTVRSKGQCGAFPDDADAIFELARQAIGGWGLRGGVEYLDIEANWPMEH
RAALIAEARRHYPATALIGSYHVMGRATSEERAKELFLECYHNGAVDAVK
VVTTAMVPEDGFRVHHAAQALRLPVPYIGLCLTATGQLSRVLNRRFTPVT
HGRLPAMAAPGQMTAEHIMKLRKELAIVPPRRFFLFGSPIAASPRPDMQP
AG
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mRNA from alignment at P-wetherbeei_contig18041:3..1383+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18041.1.1 ID=mRNA_P-wetherbeei_contig18041.1.1|Name=mRNA_P-wetherbeei_contig18041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1381bp|location=Sequence derived from alignment at P-wetherbeei_contig18041:3..1383+ (Phaeothamnion wetherbeei SAG_119_79)
AGCTTGACGTTTCCGGACATGTCGGCACAGGCAGCGCTGCTGCCGCAGCT CTGCGACGGCGCCGACGCCATGGAACTGCGCGTGGATCTGCTGGCAGAAC GCGACGACCCCATCGCCGTCCTGCGGCAGCTGCAGCTGCTGCGTGCCAGC ACGGCCCGCCGGCCGGTCATCTTCACGGTGCGCAGCAAGGGTCAGTGCGG CGCCTTTCCCGACGACGCCGACGCCATCTTTGAGCTCGCCAGGCAAGCGA TCGGAGGGTTCTCTGGGCGTGCGTGTTTCGATGGGTGGCCTTCCATTCGA TTTGCTCTTTTCAACTCTCATGAGGGTTGCAGTGACGGCTGCAGGCTGAT TTTCCTTTCGGCCCCAAACTTTCCTATCTCTTGGCTACTGGAATTGCCAT TTCTGCATGAGTTGCAGTTTTCTTGTGACAGGTTCACAGGGGAAGCAAAA CGCACCTGCTTCGTTCTTGTTTCTTCTTGGAGCTAGTTTCTCTCTACCCA ATCCAAACGAATCTAGGAACCATGACCTCTCCATCCTCACCACGCATGCC GTCTTTCTTCCCCCTCTTTCTAATTTGCAGGTGGGGACTGCGTGGCGGCG TCGAATATCTGGATATCGAGGCCAACTGGCCGATGGAGCACCGCGCTGCC CTTATTGCCGAGGCTCGGCGGCACTACCCGGCGACGGCACTCATCGGCTC GTACCATGTCATGGGGCGGGCCACCAGTGAGGAGCGCGCCAAGGAGCTCT TCTTGGAGTGCTATCACAATGGCGCCGTCGATGCAGTCAAAGTGAGCGGG AAGTCTGTGAAGACTGGCTGCTCTGGGAAGGCGGTGCTGGCACATCGAAG TATTGAGAAGGGTTAGGGTGGCGGCGCAGTTCCTGCATTTCGCATGCTCT TTTGGACTTCCTCGCTTTCCCTGGCAAGTTAGGCTCTGCAGGAGATTTTG CTTAACCTAATCTTCTGCTTTGATCGCTTGCGTTCTCAATGCTGACTCTT TTTCTTTCCGTCTCTTCCTTGTTCCTCTTATCGTCCTTCTCCCTTTCTCC ATTTCCGTCTGGTCCCTCCCCAAAGGTGGTTACTACGGCCATGGTGCCGG AGGATGGCTTTCGGGTGCACCACGCGGCGCAGGCGCTGCGGCTGCCCGTC CCGTACATCGGCCTCTGCCTGACGGCGACGGGCCAGTTGAGCCGCGTGCT GAACCGCCGTTTCACCCCCGTAACGCATGGCCGGCTGCCTGCGATGGCCG CTCCCGGACAGATGACAGCCGAACACATTATGAAGCTGCGAAAGGAGCTG GCAATCGTGCCGCCGCGCCGCTTCTTCCTCTTCGGCAGCCCGATCGCCGC ATCGCCCCGCCCGGACATGCAACCCGCGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18041:3..1383+

>mRNA_P-wetherbeei_contig18041.1.1 ID=mRNA_P-wetherbeei_contig18041.1.1|Name=mRNA_P-wetherbeei_contig18041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig18041:3..1383+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGCACAGGCAGCGCTGCTGCCGCAGCTCTGCGACGGCGCCGACGC
CATGGAACTGCGCGTGGATCTGCTGGCAGAACGCGACGACCCCATCGCCG
TCCTGCGGCAGCTGCAGCTGCTGCGTGCCAGCACGGCCCGCCGGCCGGTC
ATCTTCACGGTGCGCAGCAAGGGTCAGTGCGGCGCCTTTCCCGACGACGC
CGACGCCATCTTTGAGCTCGCCAGGCAAGCGATCGGAGGGTGGGGACTGC
GTGGCGGCGTCGAATATCTGGATATCGAGGCCAACTGGCCGATGGAGCAC
CGCGCTGCCCTTATTGCCGAGGCTCGGCGGCACTACCCGGCGACGGCACT
CATCGGCTCGTACCATGTCATGGGGCGGGCCACCAGTGAGGAGCGCGCCA
AGGAGCTCTTCTTGGAGTGCTATCACAATGGCGCCGTCGATGCAGTCAAA
GTGGTTACTACGGCCATGGTGCCGGAGGATGGCTTTCGGGTGCACCACGC
GGCGCAGGCGCTGCGGCTGCCCGTCCCGTACATCGGCCTCTGCCTGACGG
CGACGGGCCAGTTGAGCCGCGTGCTGAACCGCCGTTTCACCCCCGTAACG
CATGGCCGGCTGCCTGCGATGGCCGCTCCCGGACAGATGACAGCCGAACA
CATTATGAAGCTGCGAAAGGAGCTGGCAATCGTGCCGCCGCGCCGCTTCT
TCCTCTTCGGCAGCCCGATCGCCGCATCGCCCCGCCCGGACATGCAACCC
GCGGGC
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