mRNA_P-wetherbeei_contig18032.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18032.2.1
Unique NamemRNA_P-wetherbeei_contig18032.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18032.2.1 vs. uniprot
Match: A0A7X8XL26_9BURK (SpoIID/LytB domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XL26_9BURK)

HSP 1 Score: 138 bits (347), Expect = 1.970e-34
Identity = 77/192 (40.10%), Postives = 109/192 (56.77%), Query Frame = 1 
Query:    4 GGWRADWELRGARQALQAMGLPVAVIDPLSLRRKGCPTQILVLANCKNMDKATVLAIKEHIRRGGKVLATYQTSYKQEDNRSWSPNNFALSTELGIRFSRWVGGTPECSRLIPTAVLPGKPTGVALLRHQAMLVDPLPGSRVLATWDKTDKTAKAAVVETAAGIYCGEDLLAPENAQSPAVLQLLAAYISEL 579
            GGWRA W+L GA    + +GL    + P  L        +LVL++ + +  AT++A+++H+ RGG++LAT QTSY+  +NR W    FAL+   G  F RW G   E    +   +  GK   V L R +AMLV P P SRVLA +   +    AA++ET AGIY G  LLAPEN+ S  V +L+ A +  +
Sbjct:   53 GGWRASWDLLGAENTFRRLGLECRPVRPADLETGAWTGDLLVLSDIRLIAPATLVAVRQHVARGGRLLATGQTSYRDHENRPWQSPGFALAELFGADFHRWSGLASEAGLALEEELGGGK---VLLGRGEAMLVRPRPDSRVLARF--LEPAGSAAILETRAGIYTGVSLLAPENSDSAEVTRLVGALLERI 239
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BLAST of mRNA_P-wetherbeei_contig18032.2.1 vs. uniprot
Match: A0A1V5IW53_9FIRM (Beta-galactosidase trimerization domain protein n=1 Tax=Firmicutes bacterium ADurb.BinA052 TaxID=1852896 RepID=A0A1V5IW53_9FIRM)

HSP 1 Score: 53.9 bits (128), Expect = 4.110e-5
Identity = 50/180 (27.78%), Postives = 80/180 (44.44%), Query Frame = 1 
Query:   49 LQAMGLPVAVIDPLSLRRKGCPT-QILVLANCKNMDKATVLAIKEHIRRGGKVLATYQTSYKQEDNRSWSPNNFALSTELGIRFSRWV--GGTPECSRLIPTAVLPGKPTGVALLRHQAMLVDPLPGSRVLATWDKTDKTAKAAVVETAAGIYCGEDLLAPENAQSPAVLQLLAAYISEL 579
            L   G+  AVI    L      + + LVL +   M +     I +    GG+VLAT+ TS + +  R  S  ++ L+  +G+R S  V     P  +      +  G    + + R + ++      + VLA W       + A+ ET  GIYC E+L + +NA +P V  L+   IS L
Sbjct:   88 LARAGISAAVITDHDLEIGSLRSYKALVLPSTSCMSQLAAENIAKFTEAGGRVLATFDTSLRDDFWRLHS--DYRLTEIMGVRHSSVVEVNADPMIASASSHPIFRGLDFTIPVPRQRGLVNRVNHDALVLAKWSD----GRLAMTETRYGIYCSENLFSSKNATTPEVTSLIVNAISYL 261
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18032.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7X8XL26_9BURK1.970e-3440.10SpoIID/LytB domain-containing protein n=1 Tax=Burk... [more]
A0A1V5IW53_9FIRM4.110e-527.78Beta-galactosidase trimerization domain protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18032contigP-wetherbeei_contig18032:547..1125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog521045.Kole_1996
Model size579
Max annot lvl200918|Thermotogae
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.18e-14
EggNOG OGs2EZUX@1|root,33SZE@2|Bacteria,2GE07@200918|Thermotogae
Cds size579
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.18091-CDS-P-wetherbeei_contig18032:546..11251683186134.18091-CDS-P-wetherbeei_contig18032:546..1125Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18032 547..1125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18032.2.1prot_P-wetherbeei_contig18032.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18032 547..1125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18032.2.1

>prot_P-wetherbeei_contig18032.2.1 ID=prot_P-wetherbeei_contig18032.2.1|Name=mRNA_P-wetherbeei_contig18032.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp
LGGWRADWELRGARQALQAMGLPVAVIDPLSLRRKGCPTQILVLANCKNM
DKATVLAIKEHIRRGGKVLATYQTSYKQEDNRSWSPNNFALSTELGIRFS
RWVGGTPECSRLIPTAVLPGKPTGVALLRHQAMLVDPLPGSRVLATWDKT
DKTAKAAVVETAAGIYCGEDLLAPENAQSPAVLQLLAAYISEL
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mRNA from alignment at P-wetherbeei_contig18032:547..1125-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18032.2.1 ID=mRNA_P-wetherbeei_contig18032.2.1|Name=mRNA_P-wetherbeei_contig18032.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig18032:547..1125- (Phaeothamnion wetherbeei SAG_119_79)
CTGGGCGGCTGGCGCGCCGACTGGGAGTTGCGCGGCGCGCGCCAGGCCCT
GCAGGCGATGGGCCTACCGGTGGCCGTCATCGACCCGCTCTCTCTACGCC
GCAAGGGCTGTCCCACCCAGATTCTGGTCCTGGCCAACTGCAAGAACATG
GACAAAGCCACGGTTCTGGCCATCAAAGAGCACATCCGCCGGGGCGGAAA
AGTGCTGGCCACCTACCAGACTTCTTACAAGCAGGAAGACAACCGCAGCT
GGTCTCCCAATAATTTTGCTCTTTCCACCGAGCTGGGGATCCGCTTCTCT
CGCTGGGTAGGTGGCACCCCCGAATGCTCTCGTTTGATTCCCACGGCGGT
TTTGCCCGGCAAACCGACGGGTGTTGCCCTGCTGCGCCATCAGGCGATGC
TGGTCGACCCCTTGCCCGGTAGCCGCGTTCTGGCCACCTGGGATAAGACC
GACAAAACCGCCAAAGCTGCGGTCGTCGAGACGGCCGCCGGTATTTATTG
CGGCGAAGACCTGCTGGCCCCCGAAAACGCGCAGAGTCCGGCCGTTTTAC
AGCTTCTCGCAGCCTATATCAGCGAACTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18032:547..1125-

>mRNA_P-wetherbeei_contig18032.2.1 ID=mRNA_P-wetherbeei_contig18032.2.1|Name=mRNA_P-wetherbeei_contig18032.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig18032:547..1125- (Phaeothamnion wetherbeei SAG_119_79)
CTGGGCGGCTGGCGCGCCGACTGGGAGTTGCGCGGCGCGCGCCAGGCCCT
GCAGGCGATGGGCCTACCGGTGGCCGTCATCGACCCGCTCTCTCTACGCC
GCAAGGGCTGTCCCACCCAGATTCTGGTCCTGGCCAACTGCAAGAACATG
GACAAAGCCACGGTTCTGGCCATCAAAGAGCACATCCGCCGGGGCGGAAA
AGTGCTGGCCACCTACCAGACTTCTTACAAGCAGGAAGACAACCGCAGCT
GGTCTCCCAATAATTTTGCTCTTTCCACCGAGCTGGGGATCCGCTTCTCT
CGCTGGGTAGGTGGCACCCCCGAATGCTCTCGTTTGATTCCCACGGCGGT
TTTGCCCGGCAAACCGACGGGTGTTGCCCTGCTGCGCCATCAGGCGATGC
TGGTCGACCCCTTGCCCGGTAGCCGCGTTCTGGCCACCTGGGATAAGACC
GACAAAACCGCCAAAGCTGCGGTCGTCGAGACGGCCGCCGGTATTTATTG
CGGCGAAGACCTGCTGGCCCCCGAAAACGCGCAGAGTCCGGCCGTTTTAC
AGCTTCTCGCAGCCTATATCAGCGAACTT
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