mRNA_P-wetherbeei_contig1803.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1803.5.1
Unique NamemRNA_P-wetherbeei_contig1803.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1803.5.1 vs. uniprot
Match: A0A836C9A6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9A6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.570e-5
Identity = 45/102 (44.12%), Postives = 50/102 (49.02%), Query Frame = 1 
Query:   73 GDFLSAIREGAKLK--------------------------------KVEPK-AEPAAAAV---ANPSLGALANPGINDILARRKYLEA-ESDESDXXXXDWE 267
            G  L+AI+ GAKLK                                KV P  A PAAAA    A   LGA ANPGINDILARRKYLEA ESD+S+    DW+
Sbjct:   13 GSMLAAIQAGAKLKPAAASPPPAAPFXXXXXXXXXXXXXXXXXXXXKVTPADARPAAAAAVTGAPGGLGAFANPGINDILARRKYLEADESDDSELDDSDWD 114
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1803.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C9A6_9STRA2.570e-544.12Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1803contigP-wetherbeei_contig1803:5774..6612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size839
Hectar predicted targeting categoryother localisation
Exons1
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.089464-UTR-P-wetherbeei_contig1803:5773..63361683186134.089464-UTR-P-wetherbeei_contig1803:5773..6336Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1803 5774..6336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.108826-CDS-P-wetherbeei_contig1803:6336..66121683186134.108826-CDS-P-wetherbeei_contig1803:6336..6612Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1803 6337..6612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1803.5.1prot_P-wetherbeei_contig1803.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1803 6337..6612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1803.5.1

>prot_P-wetherbeei_contig1803.5.1 ID=prot_P-wetherbeei_contig1803.5.1|Name=mRNA_P-wetherbeei_contig1803.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
RRAEEAVREPSVAAVASAAAPAPAGDFLSAIREGAKLKKVEPKAEPAAAA
VANPSLGALANPGINDILARRKYLEAESDESDSDDSDWEDE*
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mRNA from alignment at P-wetherbeei_contig1803:5774..6612-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1803.5.1 ID=mRNA_P-wetherbeei_contig1803.5.1|Name=mRNA_P-wetherbeei_contig1803.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=839bp|location=Sequence derived from alignment at P-wetherbeei_contig1803:5774..6612- (Phaeothamnion wetherbeei SAG_119_79)
CGCCGGGCGGAAGAAGCGGTGCGAGAGCCGTCGGTAGCGGCAGTCGCAAG
TGCGGCCGCGCCGGCGCCGGCCGGAGACTTTTTGTCGGCGATCCGGGAGG
GCGCCAAGCTGAAAAAGGTCGAGCCCAAGGCGGAGCCGGCAGCGGCGGCG
GTGGCCAATCCGTCGCTCGGCGCGCTGGCCAACCCGGGCATCAACGACAT
ACTGGCGCGGCGGAAGTATCTCGAGGCGGAGAGCGACGAGTCGGACAGCG
ACGACTCGGACTGGGAGGACGAGTGAGAGAGAGTGAAAGAGGGAGAGGTG
CACTCGGAAGAAAAGAGCGGCGGCGGCGGCAGCAGCTGGACCGGGGGTGG
GTGGCCGGCCGGCCGGAGTGGGCGGGTAGGGAGCCAGGGGTGACGGTCGA
TTGCGGCGGAAGTTACTGGGGGTGACGGTCGATTGCAAGGCCGCCGGATC
ATGTCTACGGACGGGATCACCTGCAGGTGGGGGCTACCGCCGCTGCAGTG
AGGCCGGCCAACCGTGGACTCGCCTTGGGTTGTGCAGTGCTGCTGCCGTT
TGTGGGCCAGCAAAGGAGGCGGTCGCGTGGAAGCAGCCGCGTTTAGATGT
TAGCGTGGCGCGGCGGTTTGCGAGAGAAGACCGCCGCAATGAGCCGCAAT
ACGAATTGTTTCCATCGGTATCCCTGTTTAGGGCAGACGGCCTAGGGTGA
CGCGCCGCCCCGCCGATAAGGGGAAGTGCGGCAGGCGATCTTCGTCGGCC
ATTGAGAATAGCAAGGCAGTAGCGTGCTCTTTTCGGCCGTCGATTGGGGC
GCCGGAAGATGACATTGCAAGTAACTGCTTGTTCCCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1803:5774..6612-

>mRNA_P-wetherbeei_contig1803.5.1 ID=mRNA_P-wetherbeei_contig1803.5.1|Name=mRNA_P-wetherbeei_contig1803.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig1803:5774..6612- (Phaeothamnion wetherbeei SAG_119_79)
CGCCGGGCGGAAGAAGCGGTGCGAGAGCCGTCGGTAGCGGCAGTCGCAAG
TGCGGCCGCGCCGGCGCCGGCCGGAGACTTTTTGTCGGCGATCCGGGAGG
GCGCCAAGCTGAAAAAGGTCGAGCCCAAGGCGGAGCCGGCAGCGGCGGCG
GTGGCCAATCCGTCGCTCGGCGCGCTGGCCAACCCGGGCATCAACGACAT
ACTGGCGCGGCGGAAGTATCTCGAGGCGGAGAGCGACGAGTCGGACAGCG
ACGACTCGGACTGGGAGGACGAGTGA
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