mRNA_P-wetherbeei_contig1801.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1801.1.1
Unique NamemRNA_P-wetherbeei_contig1801.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1801.1.1 vs. uniprot
Match: A0A836CKM0_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM0_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.320e-30
Identity = 84/158 (53.16%), Postives = 108/158 (68.35%), Query Frame = 3 
Query:  423 MSDAPLSVAGIAVTVPSGPWGRATPGAAAGSSNGR-RELVERT--ADGE---SYMYQVTLRKPLGLELAQDDD-GVAVHAVWRGSNAEAAGVKRGDRVVATSATLGGQMWEKTTVDGVVSAITSRLILADDVTVRLQRSLAGHRSRAVPRERTVTRAL 875
            MSDAPLS  G+ +     PWGR T         GR RE+V+    A G    SY Y+V++RKPLGLEL + +  GV +  VW GSNAE AGV +GDRVVATSATLGG MWEK T+DGV+SAITSRLIL+D+V ++L+R L GH++ +VP ++    +L
Sbjct:    1 MSDAPLSAVGVVINTVGKPWGRRT------VPWGREREVVQANEPAGGSAAGSYTYKVSVRKPLGLELMESEGKGVLISNVWAGSNAEKAGVMKGDRVVATSATLGGAMWEKNTIDGVISAITSRLILSDEVVIQLERYLDGHKTASVPPKQEAAESL 152
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BLAST of mRNA_P-wetherbeei_contig1801.1.1 vs. uniprot
Match: D7FTM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTM8_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 6.940e-28
Identity = 81/208 (38.94%), Postives = 122/208 (58.65%), Query Frame = 3 
Query:  564 YMYQVTLRKPLGLELAQDDDGVAVHAVWRGSNAEAAGVKRGDRVVATSATLGGQMWEKTTVDGVVSAITSRLILADDVTVRLQRSLAGHRSRAVPRERTVTRALEVTLKKPVGLVLRQARRRSXXXXXXXXXXXXXXTNASGGGVFIKEIKPGSSAALSGQLQVGDRVVAVSSSLGGTVHPTNSVEGIVSAVATRVDGLVTLKVERTL 1187
            Y   V +++PLGL+LA+   GV V  V  G +AE  GV+ GDR+VATSATLG  +WEK TVDG++SA+ +RL+ ++ VT+R++R+L   +  A     +VT+  EVTL++P GL+L Q                    +     V +  I PGS A  SG ++ GD VVAVSSS+G  + P   +EG +SA+   +   + ++ +RT+
Sbjct:  285 YTGDVKVKQPLGLDLAECSGGVCVSRVRAGCSAERQGVRAGDRIVATSATLGDVLWEKNTVDGILSAVGTRLVFSNTVTLRVERALDAQQLAAARFRESVTQTYEVTLQRPPGLILEQV--------------WDPAGSGQADSVVVAGIVPGSPAESSGAVECGDTVVAVSSSIGNIMWPYRQLEGALSAIERHIGSTINIRFQRTV 478
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BLAST of mRNA_P-wetherbeei_contig1801.1.1 vs. uniprot
Match: A0A4D9CSN9_9STRA (PDZ domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSN9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.340e-22
Identity = 88/228 (38.60%), Postives = 130/228 (57.02%), Query Frame = 3 
Query:  507 AGSSNGRRELVERTADGESYMYQVTLRKPLGLELAQDDDGVA---VHAVWRGSNAEAAGVKRGDRVVATSATLGGQMWEKTTVDGVVSAITSRLILADDVTVRLQRSLAGHRSRAVPRERTVTRALEVTLKKPVGLVLRQARRRSXXXXXXXXXXXXXXTNASGGGVFIKEIKPGSSAALSGQLQVGDRVVAVSSSLGGTVHPTNSVEGIVSAVATRVDGLVTLKVER 1181
            AGSS      +E+ A   ++ ++VT+RKPLG+ +++ +  V    +  V  GSNA+ AG++ GDR+VA SAT+G ++W KTT+ GV SAI SR   +DD+T  ++R+LA          R V    EV L++PV L L Q                    NA GG VF++ +      AL  ++Q  DRVVAVS+SLG  +  TNS++G++SA+ TR+   V L+ ER
Sbjct:  136 AGSSWMEALRLEKGALRRNHRFEVTIRKPLGIFMSEGEADVGAPTISEVRPGSNADKAGLRVGDRIVAASATVGNKLWTKTTLVGVESAINSRFRFSDDITFCVERTLAQDAGDDSIASRQVE-VFEVELERPVPLELMQE-------------------NAEGG-VFVRRVLKADCEALR-RIQPYDRVVAVSASLGNRMWRTNSLDGVLSALCTRIGSKVRLQFER 341
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BLAST of mRNA_P-wetherbeei_contig1801.1.1 vs. uniprot
Match: A0A1Z9L3Z7_9SYNE (PDZ domain-containing protein n=1 Tax=Synechococcus sp. TMED187 TaxID=1986595 RepID=A0A1Z9L3Z7_9SYNE)

HSP 1 Score: 106 bits (265), Expect = 2.010e-19
Identity = 97/255 (38.04%), Postives = 136/255 (53.33%), Query Frame = 3 
Query:  486 RATPGAAAGSSNGRRELVERTADGESYMYQVTLRKPLGLELAQDDD-GVAVHAVWRGSNAEAAGVKRGDRVVATSATLGGQMWEKTTVDGVVSAITSRLILADDVTVRLQRSLAGH-RSRAVPRERTVTRALEVTLKKPVGLVLR--------QARRRSXXXXXXXXXXXXXXTNASGG---------GVFIKEIKPGSSAALSGQLQVGDRVVAVSSSLGGTVHPTNSVEGIVSAVATRVD--GLVTLKVERTL 1187
            R  PG  A SS+   E VE        +++V  +KPLGL+L +    GV V  V+ GS A   GV+ GD +VATSA+LG QMWEK T+ GV SAI +R+     V +RL+R  A   RSR    E  V    EV+L +P+GLVLR         A                   +++GG         G  + E+  G SAA SG ++VGD VVA S+S+G ++   +SVEGI +A++TR+   G V L++ R++
Sbjct:   25 RLGPGPTASSSDQGSEGVE--------IFEVACKKPLGLQLREKPGRGVEVALVYEGSKAAQLGVRAGDLIVATSASLGSQMWEKKTLAGVESAIQTRV--DGIVRLRLRRERAERWRSRW---EDPVKYEYEVSLTRPIGLVLRPSSPSVALSAAATEAAAPEPVGAATAMGDSSAGGQSADERPPAGAEVAEVVEGGSAAASGAVRVGDVVVATSASVGDSMWRKSSVEGITAAISTRLSLSGSVRLRLSRSI 266
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BLAST of mRNA_P-wetherbeei_contig1801.1.1 vs. uniprot
Match: A0A7R9UF02_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF02_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.700e-18
Identity = 85/223 (38.12%), Postives = 120/223 (53.81%), Query Frame = 3 
Query:  561 SYMYQVTLRKPLGL---ELAQDDD-----GVAVHAVWRGSNAEAAGVKRGDRVVATSATLGGQMWEKTTVDGVVSAITSRLILADDVTVRLQRSLAGHRSRAVPRERTVTRALEVTLKKPVGLVLRQARRRSXXXXXXXXXXXXXXTNASGGGVFIKEIKPGSSAALSGQLQVGDRVVAVSSSLGGTVHPTNSVEGIVSAVATRV--DGLVTLKVERTLTESE 1199
            +Y Y+V L   LGL   E A  D      GV + AV  G + EA GV   DRVVATSAT+G  MWEK T  GV+SA+ +RL +A  V +R +R+LA    R       V    +V ++KP+G+ L Q                       GG V + E++ G SA ++G +Q GD +VAVS+SLG  +  T SV+G++SAV T +  DG V +++ R +  +E
Sbjct:  318 TYTYEVELGAALGLTFEERASGDGKNQEAGVYISAVVAGGSGEAGGVCVDDRVVATSATVGSDMWEKRTKTGVLSAVRTRLAVAPTVRMRFERALAEENLRVREEREEVW---DVIVRKPLGMSLIQ--------------------EELGGPVVVSEVEKGGSADVAG-IQKGDAIVAVSNSLGSRMWNTRSVDGVISAVTTNIWADG-VQMRLRRRIDTAE 515
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BLAST of mRNA_P-wetherbeei_contig1801.1.1 vs. uniprot
Match: A0A7S0V7W8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V7W8_9CRYP)

HSP 1 Score: 96.7 bits (239), Expect = 2.240e-18
Identity = 82/232 (35.34%), Postives = 118/232 (50.86%), Query Frame = 3 
Query:  573 QVTLRKPLGLELAQDDD-GVAVHAVWRGSNAEAAGVKRGDRVVATSATLGGQMWEKTTVDGVVSAITSRLILADDVTVR------------------------LQRSLAGHRSRAVPRERTVTRALEVTLKKPVGLVLRQARRRSXXXXXXXXXXXXXX--TNASGGGVFIKEIKPGSSAALSGQLQVGDRVVAVSSSLGGTVHPTNSVEGIVSAVATRVDGLVTLKVERTL 1187
            +  L KPLG+ L +    GV V AV  GS A  AGVKRGDR+VATS+T+GGQMWEK T++GV++A+ S  +L   +  R                        LQR+++      V  + T T   E+TL  P G  +R+  +                   +  G  V + E++ G +AA SG L+ GDRV+A  + +G  + P  ++EGI +AV TR+   V LK ERT+
Sbjct:    1 EAMLYKPLGITLIEVPKFGVYVQAVTDGS-ARDAGVKRGDRIVATSSTVGGQMWEKNTLEGVLAAVQSGTLLGKSMRFRFERDEVLTSIVGYEGSDEDMSRVDLQRAISSVEVARVRVQNTATETFELTLPIP-GRDMRKLLQGDIFNGDLPYGLHLVQFPDDKQGTRVEVFEVQEGGTAAQSGLLRKGDRVIAAQAGIGEMMWPKRTLEGIATAVRTRMGPSVRLKFERTV 230
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BLAST of mRNA_P-wetherbeei_contig1801.1.1 vs. uniprot
Match: A0A7S3RM32_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RM32_EMIHU)

HSP 1 Score: 92.0 bits (227), Expect = 3.010e-17
Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = 3 
Query:  573 QVTLRKPLGLELAQDDDGVAVHAVWRGSNAEAAGVKRGDRVVATSATLGGQMWEKTTVDGVVSAITSRLILADDVTVRLQRSLAGHRSRAVPRERTVTRALEVTLKKPVGLVLRQ 917
            +  + KPLGL+L +  +GV V  V+  SNAE AGV+RGDRVVATSA++G  MWEK ++ GV++AI +R+     V +R+QRS +  R RA   E  + R+ +VTL KP+GL L Q
Sbjct:   69 EFAIPKPLGLQLEERAEGVFVSLVFEESNAERAGVRRGDRVVATSASVGDAMWEKRSISGVMAAIQTRV--DGQVRLRVQRSSSARRRRAW--ELPLRRSFDVTLSKPLGLALAQ 179
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BLAST of mRNA_P-wetherbeei_contig1801.1.1 vs. uniprot
Match: A0A8J2SI82_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SI82_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.080e-17
Identity = 85/237 (35.86%), Postives = 127/237 (53.59%), Query Frame = 3 
Query:  510 GSSNGRRELVERTADGESYMYQVTLRKPLGLELAQDDDG----VAVHAVWRGSNAEAAGVKRGDRVVATSATLGGQMWEKTTVDGVVSAITSRLILADD-VTVRLQRSL-------AGHRSRAVPRERTVTRALEVTLKKPVGLVLRQARRRSXXXXXXXXXXXXXXTNASGGGVFIKEIKPGSSAALS-GQLQVGDRVVAVSSSLGGTVHPTNSVEGIVSAVATRVDGLVTLKVER 1181
            G+ +   +LV++T     + + V+L +PLGL L +   G    V V  V     A AAG + GDRVVATSATLG  MW K+++ GVVSA+ SRL L +  V++R++RSL       A  RSR   +ER      EV L+KP+GL L+                         G   + +IK G SA  S G++++GDRVV V S+ GG ++P  + + +++A A      ++L++ER
Sbjct:   71 GARHVSEDLVKKT-----HRFDVSLTEPLGLTLGEAQAGKDTCVYVKTVDESGGAHAAGCRAGDRVVATSATLGDAMWPKSSIAGVVSAVRSRLQLGNQKVSLRIERSLDDDEVALAELRSRESVKERW-----EVELQKPLGLTLKNV----------------------DGTPTVAQIKKGGSAERSKGRVRIGDRVVGVESAFGGRMYPVTTTKEVLAAAALPTPS-ISLRLER 274
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BLAST of mRNA_P-wetherbeei_contig1801.1.1 vs. uniprot
Match: A0A7S3JYF5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYF5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.010e-16
Identity = 73/221 (33.03%), Postives = 114/221 (51.58%), Query Frame = 3 
Query:  531 ELVERTADGESYMYQVTLRKPLGLELAQDDDGVAVHAVWRGSNAEAAGVKRGDRVVATSATLGGQMWEKTTVDGVVSAITSRLILADDVTVRLQRSLAGHRSR--AVPRERTVTRALEVTLKKPVGLVLRQARRRSXXXXXXXXXXXXXXTNASGGGVFIKEIKPGSSAALSGQLQVGDRVVAVSSSLG--GTVHPTNSVEGIVSAVATRVDGLVTLKVER 1181
            E V      +++++ V L  PLGL+L +D+ GV + +V  G  AE AG++ GDRV+ATSAT+G  MW K ++ GV S++ SRL+    V VR++R+L    +   A+     +T    V LKKP+GL L                      ++  G V +K  + G SA     +QVGD ++A+ ++ G    +     VE +++A AT     V LK+ R
Sbjct:   68 EHVSEDLSRKTHVFDVRLSAPLGLKLNEDELGVYISSVENGMGAEKAGLRVGDRVIATSATIGDAMWPKKSLAGVESSVRSRLMARGSVKVRIERNLDESEAAVAALVGRSLITETWNVQLKKPLGLTL----------------------SSRDGKVIVKATRKGGSAHAEPSIQVGDAIIAIGNNFGPKSWIPVQGKVERVINA-ATGPSQSVRLKLSR 265
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BLAST of mRNA_P-wetherbeei_contig1801.1.1 vs. uniprot
Match: K8YUF8_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUF8_NANGC)

HSP 1 Score: 93.6 bits (231), Expect = 2.420e-16
Identity = 72/188 (38.30%), Postives = 106/188 (56.38%), Query Frame = 3 
Query:  537 VERTADGESYMYQVTLRKPLGLELAQDDDGVA---VHAVWRGSNAEAAGVKRGDRVVATSATLGGQMWEKTTVDGVVSAITSRLILADDVTVRLQRSLAGHRSRAVPRERTVTRALEVTLKKPVGLVLRQARRRSXXXXXXXXXXXXXXTNASGGGVFIKEIKPGSSAALSGQLQVGDRVVAVSSSLG 1091
            +E+ A   ++ ++VT+RKPLG+ +++ +  V    +  V  GSNA+ AG++ GDR+VA SAT+G ++W KTT+ GV SAI SR   +DD+T  ++R+LA          R V    EV L++PV L L Q                    NA GG VF++ +      AL  ++Q  DRVVAVS+SLG
Sbjct:  197 LEKGALRRNHRFEVTIRKPLGIFMSEGEADVGAPTISEVRLGSNADKAGLRVGDRIVAASATVGNKLWTKTTLVGVESAINSRFRFSDDITFCVERTLAQDAGDDSIASRQVE-VFEVELERPVPLELMQE-------------------NAEGG-VFVRRVLKADCEALR-RIQPYDRVVAVSASLG 362
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1801.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKM0_9STRA2.320e-3053.16PDZ domain-containing protein n=1 Tax=Tribonema mi... [more]
D7FTM8_ECTSI6.940e-2838.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CSN9_9STRA2.340e-2238.60PDZ domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A1Z9L3Z7_9SYNE2.010e-1938.04PDZ domain-containing protein n=1 Tax=Synechococcu... [more]
A0A7R9UF02_9STRA1.700e-1838.12Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S0V7W8_9CRYP2.240e-1835.34Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S3RM32_EMIHU3.010e-1748.70Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A8J2SI82_9STRA4.080e-1735.86Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S3JYF5_9STRA2.010e-1633.03Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
K8YUF8_NANGC2.420e-1638.30Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1801contigP-wetherbeei_contig1801:151..4948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FTM8
PFAMsPPR,PPR_2
Model size4798
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.28e-29
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size3975
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186133.4976747-UTR-P-wetherbeei_contig1801:150..3321683186133.4976747-UTR-P-wetherbeei_contig1801:150..332Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1801 151..332 +
1683186133.518677-UTR-P-wetherbeei_contig1801:4307..49481683186133.518677-UTR-P-wetherbeei_contig1801:4307..4948Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1801 4308..4948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186133.5090907-CDS-P-wetherbeei_contig1801:332..43071683186133.5090907-CDS-P-wetherbeei_contig1801:332..4307Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1801 333..4307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1801.1.1prot_P-wetherbeei_contig1801.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1801 333..4307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1801.1.1

>prot_P-wetherbeei_contig1801.1.1 ID=prot_P-wetherbeei_contig1801.1.1|Name=mRNA_P-wetherbeei_contig1801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1325bp
MEERKGKGTRRAAAAAAVVVAFSRKVSGVRMLMRGDALAGGAGPTRPATA
GPVARPAAPVVPASAARTGRRASGRAVPPAMSDAPLSVAGIAVTVPSGPW
GRATPGAAAGSSNGRRELVERTADGESYMYQVTLRKPLGLELAQDDDGVA
VHAVWRGSNAEAAGVKRGDRVVATSATLGGQMWEKTTVDGVVSAITSRLI
LADDVTVRLQRSLAGHRSRAVPRERTVTRALEVTLKKPVGLVLRQARRRS
GSGSGGGAAAGGSDTNASGGGVFIKEIKPGSSAALSGQLQVGDRVVAVSS
SLGGTVHPTNSVEGIVSAVATRVDGLVTLKVERTLTESEAAATEAAAGAA
VTARAAGAFSTGAAAAARGGGESATAAAATWAAAALATVVPVAAAGEPVL
AGARTAAVAAMFTPAAAASVPSEPALRRGAAVSVFMSADPLNVGGAAPSG
PVAAATAAAPAAAGAPAAAPREDAGLPLQSTAHRAAARNTVVPASAAFAM
SRAPAAAAAAVSAAVAAATESALATTPVAATAVSVLPAAAAMAAAATAAA
EEAEEQGPAARSARAVAMIRRFADVGSIDGVERVLEAAAAAGEPADACVT
TAAMAAALRLGAPGRAVRMFDASRAAGVAPTLPLFTTLVKAHGMRGRRLG
LPAAFAVLDDIRTSELEPDVVVYNTLLAACVRAGDLRRAERLFWGTMLAP
PAESGAGAAVAAADVAAVKGAQLRGAALNGAAGPSGTAGAAADEVVAAAA
TADGAAAVLNGAMAVMGAGVSGGGLSDAVSWNVLINGYARAREVDKALRC
FTQMAAAHVAPTRATYTAVMKALVSRGRVAAAVAVLDDMTAAAASAAAAA
ATTAAAAAASVDTTATIDLSDDGSSGKSSAAAAAMRAARVAAAIADDLVP
DAQAYNTVVEGYLRSLDWRAAAALVHRMRDDAGVAPDLMTYSLLMDGYNR
AGLPREALTAFREMRATGIVPNLHVYTSAVAACARRRDAYGALRLLEEMR
RSGVRPSRLTVTAAMEACVNGGRPALAASLFEEMGRAGLVPDAVARTVLV
KALYCSGDAASARAMLAEIEAAGRGRAPAPTYNVMVEAAAATGDYDGAAE
YLRRLMERGYTPSGATSAAVAACTLGSSWLRPPAAGREEEVAAIAAADAE
AAAAAAAAAAAHKLVAPTADAALELLSDSEALATAAATAAGADVEADDDG
AAEERVRFLTAAAELLGPALGRRVPAILYEALLQEHVTAGRVAAARRLVA
AAEAGRFARGRERQQRRQGQASAQGRRPAAAEPAVSAVTVLEQRLRAWDT
RALTERGGLPGSMQEKMVRGQGGR*
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mRNA from alignment at P-wetherbeei_contig1801:151..4948+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1801.1.1 ID=mRNA_P-wetherbeei_contig1801.1.1|Name=mRNA_P-wetherbeei_contig1801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4798bp|location=Sequence derived from alignment at P-wetherbeei_contig1801:151..4948+ (Phaeothamnion wetherbeei SAG_119_79)
GTGATCGCAGGGTGGCACTCGCGGACACGCTGGCCGAAGCGACCTTTCGT
TGATCTTCTTACTTTTGGTTTACTGTGTCGAGGACGAAGTCGCTGCTTGC
AGCAAGGAAAGTTTTGATAACATATTTCTAATTTGAAGAGCCGGACTTTT
CTCTATACTGTGCAATCCATCTCGCTTCAGCCATGGAAGAACGGAAAGGA
AAAGGTACAAGGCGAGCGGCGGCAGCAGCCGCCGTAGTTGTTGCCTTCTC
ACGCAAGGTTTCAGGGGTCCGGATGCTCATGCGAGGCGATGCGCTGGCCG
GAGGCGCAGGGCCGACTAGACCTGCCACGGCGGGTCCTGTGGCACGACCG
GCCGCCCCCGTCGTCCCAGCTTCGGCTGCACGGACGGGACGGCGAGCATC
GGGGCGCGCGGTGCCGCCTGCCATGTCGGATGCGCCTTTGTCGGTCGCCG
GCATCGCCGTTACGGTGCCCAGCGGCCCTTGGGGCCGCGCCACGCCCGGC
GCCGCCGCTGGGAGCAGCAACGGGAGGCGCGAGCTGGTGGAGCGCACCGC
GGACGGCGAATCATACATGTACCAAGTGACGCTGCGCAAGCCGCTGGGGC
TCGAACTGGCGCAGGATGATGACGGCGTCGCCGTGCACGCCGTATGGCGC
GGCAGCAACGCCGAGGCTGCCGGCGTGAAGCGCGGCGACCGCGTCGTGGC
CACGTCGGCGACGCTCGGCGGTCAGATGTGGGAGAAGACAACCGTGGATG
GCGTCGTCTCGGCCATCACCTCGCGCCTCATCCTGGCAGACGACGTCACC
GTCCGGCTGCAGCGGTCGCTGGCGGGCCACCGCAGTCGTGCCGTGCCCCG
CGAGCGCACCGTCACGCGCGCGCTGGAAGTCACCCTAAAAAAACCCGTCG
GCCTCGTCTTGCGGCAGGCCCGACGGAGGAGCGGCAGCGGCAGCGGCGGC
GGCGCCGCTGCCGGCGGCAGCGACACAAATGCCAGCGGCGGCGGCGTATT
TATCAAAGAGATTAAGCCCGGCAGCAGTGCGGCGCTGTCGGGGCAGCTGC
AGGTTGGCGACCGCGTCGTCGCCGTCAGCTCCTCGCTCGGCGGCACGGTC
CACCCGACCAACTCAGTGGAAGGGATCGTTTCGGCTGTGGCGACGCGCGT
CGATGGGCTGGTGACGCTCAAGGTGGAGCGCACTCTCACGGAGAGCGAGG
CAGCAGCGACAGAAGCGGCGGCGGGCGCTGCGGTGACGGCGAGAGCGGCG
GGAGCGTTTTCGACGGGAGCGGCAGCAGCAGCTAGAGGAGGAGGAGAGTC
AGCAACAGCGGCGGCGGCAACATGGGCGGCTGCGGCACTTGCAACCGTGG
TGCCAGTGGCGGCAGCTGGGGAGCCGGTGCTCGCCGGAGCGCGGACGGCG
GCGGTTGCGGCAATGTTCACACCTGCCGCGGCGGCATCCGTGCCGTCCGA
GCCAGCGTTGCGCCGCGGCGCGGCGGTGTCGGTATTTATGTCTGCAGACC
CGCTCAACGTCGGAGGAGCGGCTCCTTCGGGACCTGTGGCGGCGGCGACG
GCGGCGGCGCCGGCAGCGGCAGGGGCACCGGCGGCAGCACCAAGGGAAGA
CGCTGGATTGCCGCTGCAGTCGACGGCTCACCGTGCCGCCGCCAGAAACA
CTGTAGTCCCTGCAAGTGCTGCCTTTGCCATGTCTCGGGCACCGGCAGCA
GCGGCAGCAGCAGTGTCGGCAGCAGTAGCAGCGGCGACGGAATCGGCGTT
AGCAACGACGCCCGTGGCCGCGACAGCGGTCTCCGTGCTACCGGCAGCGG
CGGCAATGGCGGCGGCAGCAACAGCGGCGGCAGAGGAAGCCGAGGAACAG
GGTCCCGCTGCCCGCTCCGCCCGCGCGGTCGCGATGATCCGCCGCTTCGC
AGATGTCGGCTCCATCGACGGCGTGGAACGCGTCCTGGAGGCCGCTGCTG
CCGCCGGCGAGCCTGCCGATGCATGCGTTACGACGGCGGCCATGGCGGCG
GCGCTGCGGCTGGGCGCGCCGGGCCGCGCCGTCCGCATGTTCGACGCGTC
GCGCGCGGCTGGTGTTGCGCCGACGCTGCCACTCTTCACGACGCTCGTCA
AGGCGCACGGCATGCGCGGGCGGCGGCTAGGGTTGCCAGCGGCATTTGCT
GTGCTGGACGACATCAGGACGTCCGAGCTCGAGCCGGACGTGGTAGTCTA
CAACACGCTGCTAGCGGCGTGCGTGCGCGCGGGGGACCTCCGTCGGGCCG
AGCGGCTCTTCTGGGGCACGATGCTCGCGCCACCGGCGGAGTCAGGAGCG
GGAGCAGCGGTAGCGGCGGCAGATGTGGCGGCGGTAAAAGGCGCGCAGTT
GCGCGGAGCGGCGCTGAACGGAGCGGCGGGGCCGAGCGGAACAGCTGGCG
CGGCTGCGGATGAAGTCGTGGCGGCAGCGGCGACTGCGGACGGAGCTGCT
GCAGTTCTCAACGGAGCGATGGCGGTGATGGGGGCTGGCGTGAGCGGCGG
CGGGCTGAGCGATGCCGTCAGCTGGAACGTGCTCATCAACGGCTACGCCC
GCGCTCGCGAGGTGGACAAGGCGCTGCGGTGCTTCACGCAGATGGCGGCG
GCCCACGTGGCGCCGACGCGCGCTACCTACACGGCCGTCATGAAGGCACT
CGTCTCCCGTGGCCGCGTCGCCGCCGCCGTGGCGGTACTCGACGACATGA
CCGCTGCCGCCGCCTCCGCCGCCGCCGCCGCCGCTACCACTGCTGCAGCC
GCAGCTGCCTCCGTAGATACCACTGCCACCATTGACCTGAGCGACGATGG
CAGCAGCGGCAAGTCTTCAGCCGCGGCGGCAGCGATGCGGGCGGCGCGGG
TGGCTGCGGCGATCGCAGACGACCTGGTGCCGGACGCGCAAGCTTACAAC
ACGGTCGTTGAGGGATACCTGCGGTCCCTGGACTGGCGGGCGGCGGCAGC
GCTGGTGCACCGGATGCGCGACGACGCCGGCGTCGCGCCGGATTTAATGA
CGTACTCGCTGCTGATGGACGGCTACAATCGCGCGGGCCTTCCGCGCGAG
GCACTGACGGCGTTCCGGGAGATGCGGGCGACAGGCATCGTGCCGAATCT
GCACGTCTACACGAGCGCCGTCGCAGCGTGCGCGCGGCGAAGGGACGCGT
ACGGTGCGCTGCGGCTGCTGGAAGAGATGCGGCGGAGCGGCGTGCGGCCA
AGCCGGCTCACGGTGACGGCGGCGATGGAGGCGTGCGTCAACGGTGGCCG
CCCGGCGCTCGCGGCTTCGCTCTTCGAAGAGATGGGGCGAGCGGGTCTCG
TGCCAGACGCCGTGGCGCGGACTGTGTTGGTCAAGGCGCTGTACTGCTCG
GGGGATGCGGCGTCGGCACGCGCCATGCTGGCAGAGATCGAGGCCGCCGG
CCGCGGGCGGGCGCCGGCGCCCACGTACAACGTCATGGTCGAAGCGGCAG
CGGCGACGGGCGACTACGACGGCGCGGCGGAGTACCTGCGGCGGCTGATG
GAGCGCGGCTACACGCCGTCGGGGGCGACGTCGGCGGCGGTGGCCGCCTG
CACGCTGGGCTCGTCGTGGCTGCGGCCGCCGGCGGCCGGCCGGGAGGAGG
AGGTCGCCGCCATTGCCGCCGCCGATGCCGAAGCGGCCGCCGCCGCGGCC
GCCGCGGCCGCCGCGCACAAACTCGTCGCGCCGACGGCTGACGCCGCACT
AGAGTTGCTCTCCGACTCCGAAGCATTGGCGACCGCGGCGGCGACGGCCG
CTGGCGCTGACGTGGAGGCAGACGATGACGGCGCGGCAGAGGAGCGGGTC
CGTTTCCTGACAGCCGCGGCGGAGCTGCTCGGGCCGGCACTCGGACGTCG
GGTGCCAGCCATCCTCTACGAAGCGCTCCTGCAGGAGCACGTAACGGCCG
GGCGGGTGGCGGCGGCGCGGCGGCTGGTCGCGGCCGCCGAAGCGGGCCGC
TTCGCGCGGGGGCGGGAGCGGCAGCAGCGGCGGCAGGGGCAGGCGTCCGC
GCAGGGGCGACGGCCTGCTGCCGCCGAGCCGGCGGTTTCGGCGGTTACGG
TGCTGGAGCAGCGGCTGCGAGCGTGGGACACGCGCGCGCTGACAGAGCGC
GGCGGGCTGCCGGGGTCCATGCAGGAGAAGATGGTCCGTGGGCAGGGTGG
CCGGTAGGAGAAAGAAAGAAGTGTCTCGCCGATGACGGAAAAAGTGCGAG
GGACGAAGCGACGGTGGCGGCGGCAGGGCGGCAGCGGTAGTAGCGGGGCG
GCGGCAGGGCGGCAGCAGGCAGCAGCTGCCGCCGGCATCTGGCCGCGGCA
GTAACTGCCTCATGCCGGCATCTCACGGCGGCAGCCGTCCGGGTCGCGCC
GCTGCTGCATAGGATGAACGAAAAGAGAGGGTATGTCGTCGTCACCTTAC
GCAGCGTTGAGAGGCTTGATCACGCCGACCTGGGCGGCGCGGCGGCGCAC
TGAGATGGTGTGGCAGCAACGTCAGCGGGCCCGCCGGTGGAAGGCATTGA
GTGGTCGGTAGCTAAGGCAGTTTGGGAAGGAACGAGCGGCGCGGGGAGCT
CTAGCCGAGCCCTCCGACAGACAGAGAGTACCATGTTAGCCAATTAATTA
GTGGAGTAACGTTGTCGCAAGGGGAGAGTGCAGCAGTTGGGGCAGGCGAC
GGCGCGGGCGGTCCGGGCGCGGCGATCCGGACACAAGTCGGCGGCAGGGG
GCTGCGTGATTATAAGGAAAAAAGTGCAACGTTTTAACTAGGCGAGTGCG
CGGGCAAGACTGTCGTGCCGACGCTTGTAATGAAGGCAGACACACCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1801:151..4948+

>mRNA_P-wetherbeei_contig1801.1.1 ID=mRNA_P-wetherbeei_contig1801.1.1|Name=mRNA_P-wetherbeei_contig1801.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=3975bp|location=Sequence derived from alignment at P-wetherbeei_contig1801:151..4948+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGAACGGAAAGGAAAAGGTACAAGGCGAGCGGCGGCAGCAGCCGC
CGTAGTTGTTGCCTTCTCACGCAAGGTTTCAGGGGTCCGGATGCTCATGC
GAGGCGATGCGCTGGCCGGAGGCGCAGGGCCGACTAGACCTGCCACGGCG
GGTCCTGTGGCACGACCGGCCGCCCCCGTCGTCCCAGCTTCGGCTGCACG
GACGGGACGGCGAGCATCGGGGCGCGCGGTGCCGCCTGCCATGTCGGATG
CGCCTTTGTCGGTCGCCGGCATCGCCGTTACGGTGCCCAGCGGCCCTTGG
GGCCGCGCCACGCCCGGCGCCGCCGCTGGGAGCAGCAACGGGAGGCGCGA
GCTGGTGGAGCGCACCGCGGACGGCGAATCATACATGTACCAAGTGACGC
TGCGCAAGCCGCTGGGGCTCGAACTGGCGCAGGATGATGACGGCGTCGCC
GTGCACGCCGTATGGCGCGGCAGCAACGCCGAGGCTGCCGGCGTGAAGCG
CGGCGACCGCGTCGTGGCCACGTCGGCGACGCTCGGCGGTCAGATGTGGG
AGAAGACAACCGTGGATGGCGTCGTCTCGGCCATCACCTCGCGCCTCATC
CTGGCAGACGACGTCACCGTCCGGCTGCAGCGGTCGCTGGCGGGCCACCG
CAGTCGTGCCGTGCCCCGCGAGCGCACCGTCACGCGCGCGCTGGAAGTCA
CCCTAAAAAAACCCGTCGGCCTCGTCTTGCGGCAGGCCCGACGGAGGAGC
GGCAGCGGCAGCGGCGGCGGCGCCGCTGCCGGCGGCAGCGACACAAATGC
CAGCGGCGGCGGCGTATTTATCAAAGAGATTAAGCCCGGCAGCAGTGCGG
CGCTGTCGGGGCAGCTGCAGGTTGGCGACCGCGTCGTCGCCGTCAGCTCC
TCGCTCGGCGGCACGGTCCACCCGACCAACTCAGTGGAAGGGATCGTTTC
GGCTGTGGCGACGCGCGTCGATGGGCTGGTGACGCTCAAGGTGGAGCGCA
CTCTCACGGAGAGCGAGGCAGCAGCGACAGAAGCGGCGGCGGGCGCTGCG
GTGACGGCGAGAGCGGCGGGAGCGTTTTCGACGGGAGCGGCAGCAGCAGC
TAGAGGAGGAGGAGAGTCAGCAACAGCGGCGGCGGCAACATGGGCGGCTG
CGGCACTTGCAACCGTGGTGCCAGTGGCGGCAGCTGGGGAGCCGGTGCTC
GCCGGAGCGCGGACGGCGGCGGTTGCGGCAATGTTCACACCTGCCGCGGC
GGCATCCGTGCCGTCCGAGCCAGCGTTGCGCCGCGGCGCGGCGGTGTCGG
TATTTATGTCTGCAGACCCGCTCAACGTCGGAGGAGCGGCTCCTTCGGGA
CCTGTGGCGGCGGCGACGGCGGCGGCGCCGGCAGCGGCAGGGGCACCGGC
GGCAGCACCAAGGGAAGACGCTGGATTGCCGCTGCAGTCGACGGCTCACC
GTGCCGCCGCCAGAAACACTGTAGTCCCTGCAAGTGCTGCCTTTGCCATG
TCTCGGGCACCGGCAGCAGCGGCAGCAGCAGTGTCGGCAGCAGTAGCAGC
GGCGACGGAATCGGCGTTAGCAACGACGCCCGTGGCCGCGACAGCGGTCT
CCGTGCTACCGGCAGCGGCGGCAATGGCGGCGGCAGCAACAGCGGCGGCA
GAGGAAGCCGAGGAACAGGGTCCCGCTGCCCGCTCCGCCCGCGCGGTCGC
GATGATCCGCCGCTTCGCAGATGTCGGCTCCATCGACGGCGTGGAACGCG
TCCTGGAGGCCGCTGCTGCCGCCGGCGAGCCTGCCGATGCATGCGTTACG
ACGGCGGCCATGGCGGCGGCGCTGCGGCTGGGCGCGCCGGGCCGCGCCGT
CCGCATGTTCGACGCGTCGCGCGCGGCTGGTGTTGCGCCGACGCTGCCAC
TCTTCACGACGCTCGTCAAGGCGCACGGCATGCGCGGGCGGCGGCTAGGG
TTGCCAGCGGCATTTGCTGTGCTGGACGACATCAGGACGTCCGAGCTCGA
GCCGGACGTGGTAGTCTACAACACGCTGCTAGCGGCGTGCGTGCGCGCGG
GGGACCTCCGTCGGGCCGAGCGGCTCTTCTGGGGCACGATGCTCGCGCCA
CCGGCGGAGTCAGGAGCGGGAGCAGCGGTAGCGGCGGCAGATGTGGCGGC
GGTAAAAGGCGCGCAGTTGCGCGGAGCGGCGCTGAACGGAGCGGCGGGGC
CGAGCGGAACAGCTGGCGCGGCTGCGGATGAAGTCGTGGCGGCAGCGGCG
ACTGCGGACGGAGCTGCTGCAGTTCTCAACGGAGCGATGGCGGTGATGGG
GGCTGGCGTGAGCGGCGGCGGGCTGAGCGATGCCGTCAGCTGGAACGTGC
TCATCAACGGCTACGCCCGCGCTCGCGAGGTGGACAAGGCGCTGCGGTGC
TTCACGCAGATGGCGGCGGCCCACGTGGCGCCGACGCGCGCTACCTACAC
GGCCGTCATGAAGGCACTCGTCTCCCGTGGCCGCGTCGCCGCCGCCGTGG
CGGTACTCGACGACATGACCGCTGCCGCCGCCTCCGCCGCCGCCGCCGCC
GCTACCACTGCTGCAGCCGCAGCTGCCTCCGTAGATACCACTGCCACCAT
TGACCTGAGCGACGATGGCAGCAGCGGCAAGTCTTCAGCCGCGGCGGCAG
CGATGCGGGCGGCGCGGGTGGCTGCGGCGATCGCAGACGACCTGGTGCCG
GACGCGCAAGCTTACAACACGGTCGTTGAGGGATACCTGCGGTCCCTGGA
CTGGCGGGCGGCGGCAGCGCTGGTGCACCGGATGCGCGACGACGCCGGCG
TCGCGCCGGATTTAATGACGTACTCGCTGCTGATGGACGGCTACAATCGC
GCGGGCCTTCCGCGCGAGGCACTGACGGCGTTCCGGGAGATGCGGGCGAC
AGGCATCGTGCCGAATCTGCACGTCTACACGAGCGCCGTCGCAGCGTGCG
CGCGGCGAAGGGACGCGTACGGTGCGCTGCGGCTGCTGGAAGAGATGCGG
CGGAGCGGCGTGCGGCCAAGCCGGCTCACGGTGACGGCGGCGATGGAGGC
GTGCGTCAACGGTGGCCGCCCGGCGCTCGCGGCTTCGCTCTTCGAAGAGA
TGGGGCGAGCGGGTCTCGTGCCAGACGCCGTGGCGCGGACTGTGTTGGTC
AAGGCGCTGTACTGCTCGGGGGATGCGGCGTCGGCACGCGCCATGCTGGC
AGAGATCGAGGCCGCCGGCCGCGGGCGGGCGCCGGCGCCCACGTACAACG
TCATGGTCGAAGCGGCAGCGGCGACGGGCGACTACGACGGCGCGGCGGAG
TACCTGCGGCGGCTGATGGAGCGCGGCTACACGCCGTCGGGGGCGACGTC
GGCGGCGGTGGCCGCCTGCACGCTGGGCTCGTCGTGGCTGCGGCCGCCGG
CGGCCGGCCGGGAGGAGGAGGTCGCCGCCATTGCCGCCGCCGATGCCGAA
GCGGCCGCCGCCGCGGCCGCCGCGGCCGCCGCGCACAAACTCGTCGCGCC
GACGGCTGACGCCGCACTAGAGTTGCTCTCCGACTCCGAAGCATTGGCGA
CCGCGGCGGCGACGGCCGCTGGCGCTGACGTGGAGGCAGACGATGACGGC
GCGGCAGAGGAGCGGGTCCGTTTCCTGACAGCCGCGGCGGAGCTGCTCGG
GCCGGCACTCGGACGTCGGGTGCCAGCCATCCTCTACGAAGCGCTCCTGC
AGGAGCACGTAACGGCCGGGCGGGTGGCGGCGGCGCGGCGGCTGGTCGCG
GCCGCCGAAGCGGGCCGCTTCGCGCGGGGGCGGGAGCGGCAGCAGCGGCG
GCAGGGGCAGGCGTCCGCGCAGGGGCGACGGCCTGCTGCCGCCGAGCCGG
CGGTTTCGGCGGTTACGGTGCTGGAGCAGCGGCTGCGAGCGTGGGACACG
CGCGCGCTGACAGAGCGCGGCGGGCTGCCGGGGTCCATGCAGGAGAAGAT
GGTCCGTGGGCAGGGTGGCCGGTAG
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