mRNA_P-wetherbeei_contig18007.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18007.1.1
Unique NamemRNA_P-wetherbeei_contig18007.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18007.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18007contigP-wetherbeei_contig18007:3..1386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1385
Hectar predicted targeting categoryother localisation
Exons1
Cds size783
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186133.4573965-CDS-P-wetherbeei_contig18007:2..7851683186133.4573965-CDS-P-wetherbeei_contig18007:2..785Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18007 3..785 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186133.46768-UTR-P-wetherbeei_contig18007:785..13861683186133.46768-UTR-P-wetherbeei_contig18007:785..1386Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18007 786..1386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18007.1.1prot_P-wetherbeei_contig18007.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18007 3..785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18007.1.1

>prot_P-wetherbeei_contig18007.1.1 ID=prot_P-wetherbeei_contig18007.1.1|Name=mRNA_P-wetherbeei_contig18007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=261bp
PLAKTPNAALRRPHGPTKGIERGSGVEGDRTEPVPKVKRGDAWWLGPTAV
LEVETADNPRRCRQLKLPILAEVGVTLPFVRCPDFAAVTAAVTASTIAAA
AAAVVANSMENPAATVTTATAAAAAAATAAALTTATPAAATAAATTAVVA
AVNASYNALITAVTTAAATVAVTTAAATVAVTTAAVTAAATAATAAVTAA
TTVATVLVVTVVVAAAPGAAAAAAAGAMAEVSSAAFSLRWMSRPAPSATG
GSTGARRARP*
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mRNA from alignment at P-wetherbeei_contig18007:3..1386+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18007.1.1 ID=mRNA_P-wetherbeei_contig18007.1.1|Name=mRNA_P-wetherbeei_contig18007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1384bp|location=Sequence derived from alignment at P-wetherbeei_contig18007:3..1386+ (Phaeothamnion wetherbeei SAG_119_79)
CCTCTCGCGAAGACGCCAAACGCGGCGCTGCGGCGGCCACATGGACCGAC
GAAGGGCATCGAGAGGGGAAGCGGTGTCGAGGGGGACAGGACAGAACCGG
TGCCGAAAGTGAAAAGAGGCGACGCGTGGTGGCTTGGGCCGACGGCGGTG
TTGGAAGTGGAGACGGCGGACAATCCCAGAAGGTGCCGGCAGCTGAAGCT
GCCCATCCTGGCGGAAGTCGGAGTGACACTGCCATTTGTGCGGTGTCCCG
ACTTCGCAGCCGTAACGGCGGCGGTGACCGCGAGCACGATCGCAGCCGCG
GCGGCCGCCGTGGTGGCGAACTCAATGGAGAACCCAGCGGCGACCGTGAC
AACCGCGACCGCAGCAGCGGCAGCGGCCGCGACTGCCGCGGCATTGACCA
CAGCGACGCCCGCGGCAGCGACTGCGGCGGCGACCACGGCGGTGGTGGCC
GCGGTGAACGCGTCGTACAACGCATTGATTACCGCAGTGACGACCGCGGC
GGCGACCGTGGCGGTGACGACCGCTGCGGCGACCGTGGCAGTGACGACCG
CGGCGGTTACCGCGGCGGCGACCGCGGCGACCGCGGCGGTGACCGCGGCG
ACGACCGTGGCCACAGTGTTGGTGGTGACAGTGGTGGTGGCGGCGGCGCC
GGGGGCAGCGGCGGCGGCAGCAGCGGGAGCGATGGCAGAGGTCTCCTCAG
CAGCATTCTCACTACGATGGATGAGCAGGCCGGCGCCATCCGCGACGGGC
GGGAGTACCGGCGCGAGAAGAGCGCGGCCGTAGGGTACGGCGAGGCGCGC
GCCGCCGCGGCCAACCAGACGCGAGGTGATCCGGGCGACTTTTCCACCGC
CCACCATGTGAGGTGGAGCGCGCAGGAAGCGTCAGGAAGCGGCAGCGGCG
GCGGCGTGCGGGGCGGCCATGAGGTACGGCTGCCGGCAAAACGGCGCATC
GTGGACTCTCCTGGCGCTGGCGGTAACTGTGGCTCTGGCGGCGCAGCCGC
CAGAGCTCTGGCGGGTAACAGCAGCAAGCTGCCGAGGGTCTCCAGAAGGC
CGTCGGCTGGCGATGCCGCTGCCGCCGCCGCCGCGGCAACGTCAAAAAAC
GCCGGAGAAAAGAAGGCAAAGAGCGCTCCGTTGCTGTCATCCCTTCTTGG
CGACATGGACCGTAGTTGGGGAGGCCAGTAACAGGGCAGAGGTGGGAGTG
CCGCTCCAAGGAAGTAACGAAACAAACGGTTAACCACTGGCTGGAGCCTG
TTTTCGTTATAGGGAGAGTGTGTTTATATCGGAATGTCATTCTTTGTGAT
GGACAAGGGCTAGGTATCTAGGGAGACGAGATGGTCCTTAGCACGCAAAG
GCCTTGGCCGAAGGACACGCCATAAGAGACGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18007:3..1386+

>mRNA_P-wetherbeei_contig18007.1.1 ID=mRNA_P-wetherbeei_contig18007.1.1|Name=mRNA_P-wetherbeei_contig18007.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=783bp|location=Sequence derived from alignment at P-wetherbeei_contig18007:3..1386+ (Phaeothamnion wetherbeei SAG_119_79)
CCTCTCGCGAAGACGCCAAACGCGGCGCTGCGGCGGCCACATGGACCGAC
GAAGGGCATCGAGAGGGGAAGCGGTGTCGAGGGGGACAGGACAGAACCGG
TGCCGAAAGTGAAAAGAGGCGACGCGTGGTGGCTTGGGCCGACGGCGGTG
TTGGAAGTGGAGACGGCGGACAATCCCAGAAGGTGCCGGCAGCTGAAGCT
GCCCATCCTGGCGGAAGTCGGAGTGACACTGCCATTTGTGCGGTGTCCCG
ACTTCGCAGCCGTAACGGCGGCGGTGACCGCGAGCACGATCGCAGCCGCG
GCGGCCGCCGTGGTGGCGAACTCAATGGAGAACCCAGCGGCGACCGTGAC
AACCGCGACCGCAGCAGCGGCAGCGGCCGCGACTGCCGCGGCATTGACCA
CAGCGACGCCCGCGGCAGCGACTGCGGCGGCGACCACGGCGGTGGTGGCC
GCGGTGAACGCGTCGTACAACGCATTGATTACCGCAGTGACGACCGCGGC
GGCGACCGTGGCGGTGACGACCGCTGCGGCGACCGTGGCAGTGACGACCG
CGGCGGTTACCGCGGCGGCGACCGCGGCGACCGCGGCGGTGACCGCGGCG
ACGACCGTGGCCACAGTGTTGGTGGTGACAGTGGTGGTGGCGGCGGCGCC
GGGGGCAGCGGCGGCGGCAGCAGCGGGAGCGATGGCAGAGGTCTCCTCAG
CAGCATTCTCACTACGATGGATGAGCAGGCCGGCGCCATCCGCGACGGGC
GGGAGTACCGGCGCGAGAAGAGCGCGGCCGTAG
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