mRNA_P-wetherbeei_contig17994.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17994.3.1
Unique NamemRNA_P-wetherbeei_contig17994.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17994.3.1 vs. uniprot
Match: A0A536U445_9PROT (Probable transcriptional regulatory protein E6H72_02535 n=7 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536U445_9PROT)

HSP 1 Score: 160 bits (405), Expect = 2.370e-47
Identity = 81/105 (77.14%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:    1 CGQFLFAPGLTEDKVMEAALDAGAEDVVAHDDGSIEVISAPADFAAVKAGLEKAGLKPEVAEITMKPTLENALAGDDAAKMQKLLDALEGLDDVQEVYTTAVLDE 315
            CGQF+FAPG +E++VMEAALDAGAEDVV +DDGS+EVI APADF AVK GL KAGLKPE+AEITMKPT EN L GD+  +MQKLLDALE LDDVQ+VYTTAV+D+
Sbjct:  137 CGQFVFAPGTSEERVMEAALDAGAEDVVTNDDGSVEVICAPADFTAVKNGLAKAGLKPELAEITMKPTAENLLMGDEGGRMQKLLDALEDLDDVQDVYTTAVIDQ 241
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BLAST of mRNA_P-wetherbeei_contig17994.3.1 vs. uniprot
Match: A0A1F3YBU7_9PROT (Probable transcriptional regulatory protein A2W21_07640 n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YBU7_9PROT)

HSP 1 Score: 160 bits (404), Expect = 3.360e-47
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    1 CGQFLFAPGLTEDKVMEAALDAGAEDVVAHDDGSIEVISAPADFAAVKAGLEKAGLKPEVAEITMKPTLENALAGDDAAKMQKLLDALEGLDDVQEVYTTAVLDE 315
            CGQF+FAPG TEDKVMEAALDAGAEDVVA++DGSIEVI AP DF  VKAGLEKAGLKP+ AE+TMKP  E  LAG+DA KM+ LLDALE LDDVQ+VYTTA LDE
Sbjct:  137 CGQFVFAPGATEDKVMEAALDAGAEDVVANEDGSIEVICAPGDFEKVKAGLEKAGLKPDAAEVTMKPASEVVLAGEDAEKMRNLLDALESLDDVQDVYTTAALDE 241
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BLAST of mRNA_P-wetherbeei_contig17994.3.1 vs. uniprot
Match: A0A1F4D728_9PROT (Probable transcriptional regulatory protein A3F74_13335 n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4D728_9PROT)

HSP 1 Score: 155 bits (393), Expect = 1.590e-45
Identity = 78/104 (75.00%), Postives = 90/104 (86.54%), Query Frame = 1 
Query:    1 CGQFLFAPGLTEDKVMEAALDAGAEDVVAHDDGSIEVISAPADFAAVKAGLEKAGLKPEVAEITMKPTLENALAGDDAAKMQKLLDALEGLDDVQEVYTTAVLD 312
            CGQ LFAPG  EDK+MEAA++AGAEDVV +DDGSIEVI+ P DF+AV+  LEKAG KP +AE+TMKPT ENAL GDDAA+MQ+LLDALE +DDVQEVYTTAV D
Sbjct:  137 CGQMLFAPGTNEDKLMEAAIEAGAEDVVTNDDGSIEVIAGPHDFSAVRGALEKAGFKPALAEVTMKPTTENALTGDDAARMQRLLDALEAVDDVQEVYTTAVFD 240
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BLAST of mRNA_P-wetherbeei_contig17994.3.1 vs. uniprot
Match: A0A1F3YKA4_9PROT (Probable transcriptional regulatory protein A2V78_10065 n=1 Tax=Betaproteobacteria bacterium RBG_16_64_18 TaxID=1797477 RepID=A0A1F3YKA4_9PROT)

HSP 1 Score: 155 bits (393), Expect = 1.590e-45
Identity = 76/106 (71.70%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:    1 CGQFLFAPGLTEDKVMEAALDAGAEDVVAHDDGSIEVISAPADFAAVKAGLEKAGLKPEVAEITMKPTLENALAGDDAAKMQKLLDALEGLDDVQEVYTTAVLDEA 318
            CGQ +FAPG +E+KVM+ AL+AGA+DVVA+DDGSIEV+ APADFA V+A LEK+GLKP++AE+TMKPT EN LAGDDA +MQKLLDALE +DDVQ VYTTAV++++
Sbjct:  137 CGQLVFAPGASEEKVMDVALEAGADDVVANDDGSIEVVCAPADFAKVRAALEKSGLKPDLAEVTMKPTTENELAGDDALRMQKLLDALESIDDVQNVYTTAVIEQS 242
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BLAST of mRNA_P-wetherbeei_contig17994.3.1 vs. uniprot
Match: A0A257XGS3_9PROT (Probable transcriptional regulatory protein B7Z51_01200 n=2 Tax=unclassified Methyloversatilis TaxID=2639971 RepID=A0A257XGS3_9PROT)

HSP 1 Score: 155 bits (391), Expect = 3.190e-45
Identity = 78/105 (74.29%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:    1 CGQFLFAPGLTEDKVMEAALDAGAEDVVAHDDGSIEVISAPADFAAVKAGLEKAGLKPEVAEITMKPTLENALAGDDAAKMQKLLDALEGLDDVQEVYTTAVLDE 315
            CGQF+FAPG  ED +MEAALDAGAEDVV++DDGS+EV+S P DF AVK  LEKAG KPE AE+TMKP  EN L GDD A+MQKLLDAL+ LDDVQ+VYTTAV+DE
Sbjct:  137 CGQFIFAPGTPEDALMEAALDAGAEDVVSNDDGSVEVLSPPNDFVAVKDALEKAGFKPEFAEVTMKPLNENVLTGDDTARMQKLLDALDSLDDVQDVYTTAVMDE 241
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BLAST of mRNA_P-wetherbeei_contig17994.3.1 vs. uniprot
Match: A0A1F4CY36_9PROT (Probable transcriptional regulatory protein A3G28_01665 n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CY36_9PROT)

HSP 1 Score: 154 bits (390), Expect = 4.280e-45
Identity = 77/104 (74.04%), Postives = 93/104 (89.42%), Query Frame = 1 
Query:    1 CGQFLFAPGLTEDKVMEAALDAGAEDVVAHDDGSIEVISAPADFAAVKAGLEKAGLKPEVAEITMKPTLENALAGDDAAKMQKLLDALEGLDDVQEVYTTAVLD 312
            CGQF+FAPG +EDKVMEAALDAGAEDV  +DD S+E++ APADFAAVKA L KAGLKPE+AE+TMKPT ENAL  ++AA+M++LL+ALE LDDVQ+VYTTAV+D
Sbjct:  137 CGQFVFAPGTSEDKVMEAALDAGAEDVFKNDDDSVELVCAPADFAAVKAALAKAGLKPELAEVTMKPTAENALGAEEAARMRRLLEALENLDDVQDVYTTAVID 240
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BLAST of mRNA_P-wetherbeei_contig17994.3.1 vs. uniprot
Match: A0A363SL63_9RHOO (Probable transcriptional regulatory protein C3F19_05030 n=3 Tax=Betaproteobacteria TaxID=28216 RepID=A0A363SL63_9RHOO)

HSP 1 Score: 154 bits (390), Expect = 4.520e-45
Identity = 78/105 (74.29%), Postives = 95/105 (90.48%), Query Frame = 1 
Query:    1 CGQFLFAPGLTEDKVMEAALDAGAEDVVAHDDGSIEVISAPADFAAVKAGLEKAGLKPEVAEITMKPTLENALAGDDAAKMQKLLDALEGLDDVQEVYTTAVLDE 315
            CGQF+FAPG +EDKVMEAAL+AGAEDV+ ++DGS+EVI APADF AVKAGLE+AGL+ E+A+IT+KP  E  LAG+DAA+MQKLLDALE LDDVQEVYTTA+++E
Sbjct:  137 CGQFIFAPGTSEDKVMEAALEAGAEDVLTNEDGSVEVICAPADFHAVKAGLEQAGLQAEIADITLKPLNETELAGEDAARMQKLLDALEALDDVQEVYTTALMNE 241
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BLAST of mRNA_P-wetherbeei_contig17994.3.1 vs. uniprot
Match: A0A1F4CBV9_9PROT (Probable transcriptional regulatory protein A3F75_03490 n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4CBV9_9PROT)

HSP 1 Score: 153 bits (387), Expect = 1.250e-44
Identity = 78/105 (74.29%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:    1 CGQFLFAPGLTEDKVMEAALDAGAEDVVAHDDGSIEVISAPADFAAVKAGLEKAGLKPEVAEITMKPTLENALAGDDAAKMQKLLDALEGLDDVQEVYTTAVLDE 315
            CGQF+FAPG +EDKVME AL+AGAEDV+A++D S+EVI A +DF+AVK GL KAGLKPE+AEITMKP  E  ++GDDA +MQKLLDALE LDDVQEVYTTA+LDE
Sbjct:  137 CGQFIFAPGTSEDKVMEVALEAGAEDVLANEDDSVEVICAISDFSAVKQGLAKAGLKPELAEITMKPLSETVISGDDALRMQKLLDALEALDDVQEVYTTAILDE 241
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BLAST of mRNA_P-wetherbeei_contig17994.3.1 vs. uniprot
Match: A0A3D0LU56_9PROT (Probable transcriptional regulatory protein DEP05_04410 n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3D0LU56_9PROT)

HSP 1 Score: 153 bits (386), Expect = 1.820e-44
Identity = 77/106 (72.64%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 CGQFLFAPGLTEDKVMEAALDAGAEDVVAHDDGSIEVISAPADFAAVKAGLEKAGLKPEVAEITMKPTLENALAGDDAAKMQKLLDALEGLDDVQEVYTTAVLDEA 318
            CGQ +FAPG+ E+ +MEAAL+AGAEDV+A+DDGSIEVI+APADF+AVK  L +AG  PE+AE+TMKP  E+ L G+DAAKMQKLLDALE LDDVQ+VYTTAV+DEA
Sbjct:  137 CGQLIFAPGVEEEPLMEAALEAGAEDVIANDDGSIEVITAPADFSAVKEQLSRAGFTPELAEVTMKPASESELVGEDAAKMQKLLDALESLDDVQDVYTTAVIDEA 242
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BLAST of mRNA_P-wetherbeei_contig17994.3.1 vs. uniprot
Match: S6A9Q3_SULDS (Probable transcriptional regulatory protein SCD_n00668 n=4 Tax=Proteobacteria TaxID=1224 RepID=S6A9Q3_SULDS)

HSP 1 Score: 152 bits (385), Expect = 2.580e-44
Identity = 78/105 (74.29%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:    1 CGQFLFAPGLTEDKVMEAALDAGAEDVVAHDDGSIEVISAPADFAAVKAGLEKAGLKPEVAEITMKPTLENALAGDDAAKMQKLLDALEGLDDVQEVYTTAVLDE 315
            CGQ LFAPG  EDK+MEAAL+AGAEDVV ++DGSIEV++ P +FAA+K  L KAGL+PEV E+TMKP  EN L GDDA KMQKLLDALE LDDVQEVYTTAV+DE
Sbjct:  137 CGQMLFAPGTDEDKLMEAALEAGAEDVVTNEDGSIEVVTDPYEFAAIKEALVKAGLQPEVGEVTMKPANENELTGDDAVKMQKLLDALESLDDVQEVYTTAVMDE 241
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17994.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A536U445_9PROT2.370e-4777.14Probable transcriptional regulatory protein E6H72_... [more]
A0A1F3YBU7_9PROT3.360e-4779.05Probable transcriptional regulatory protein A2W21_... [more]
A0A1F4D728_9PROT1.590e-4575.00Probable transcriptional regulatory protein A3F74_... [more]
A0A1F3YKA4_9PROT1.590e-4571.70Probable transcriptional regulatory protein A2V78_... [more]
A0A257XGS3_9PROT3.190e-4574.29Probable transcriptional regulatory protein B7Z51_... [more]
A0A1F4CY36_9PROT4.280e-4574.04Probable transcriptional regulatory protein A3G28_... [more]
A0A363SL63_9RHOO4.520e-4574.29Probable transcriptional regulatory protein C3F19_... [more]
A0A1F4CBV9_9PROT1.250e-4474.29Probable transcriptional regulatory protein A3F75_... [more]
A0A3D0LU56_9PROT1.820e-4472.64Probable transcriptional regulatory protein DEP05_... [more]
S6A9Q3_SULDS2.580e-4474.29Probable transcriptional regulatory protein SCD_n0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17994contigP-wetherbeei_contig17994:1065..1385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1163617.SCD_n00668
Preferred nameyebC
PFAMsTranscrip_reg
Model size321
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.22e-45
EggNOG OGsCOG0217@1|root,COG0217@2|Bacteria,1MW3X@1224|Proteobacteria,2VIA5@28216|Betaproteobacteria
Descriptiontranscriptional regulatory protein
Cds size321
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186133.0015457-CDS-P-wetherbeei_contig17994:1064..13851683186133.0015457-CDS-P-wetherbeei_contig17994:1064..1385Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17994 1065..1385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17994.3.1prot_P-wetherbeei_contig17994.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17994 1065..1385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17994.3.1

>prot_P-wetherbeei_contig17994.3.1 ID=prot_P-wetherbeei_contig17994.3.1|Name=mRNA_P-wetherbeei_contig17994.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
CGQFLFAPGLTEDKVMEAALDAGAEDVVAHDDGSIEVISAPADFAAVKAG
LEKAGLKPEVAEITMKPTLENALAGDDAAKMQKLLDALEGLDDVQEVYTT
AVLDEA*
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mRNA from alignment at P-wetherbeei_contig17994:1065..1385-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17994.3.1 ID=mRNA_P-wetherbeei_contig17994.3.1|Name=mRNA_P-wetherbeei_contig17994.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig17994:1065..1385- (Phaeothamnion wetherbeei SAG_119_79)
TGCGGCCAGTTCCTGTTTGCCCCGGGCCTGACCGAGGACAAGGTCATGGA
AGCCGCGCTCGACGCAGGCGCCGAGGACGTGGTCGCGCACGACGACGGCT
CGATCGAGGTGATCAGCGCGCCCGCGGATTTCGCCGCGGTGAAAGCCGGG
CTGGAGAAGGCCGGGCTGAAGCCCGAGGTCGCCGAGATCACGATGAAGCC
GACACTCGAGAATGCGCTTGCCGGGGACGACGCGGCGAAGATGCAGAAGC
TCCTCGACGCGCTCGAAGGCCTGGACGACGTCCAGGAGGTCTACACCACC
GCAGTGCTGGACGAGGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17994:1065..1385-

>mRNA_P-wetherbeei_contig17994.3.1 ID=mRNA_P-wetherbeei_contig17994.3.1|Name=mRNA_P-wetherbeei_contig17994.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig17994:1065..1385- (Phaeothamnion wetherbeei SAG_119_79)
TGCGGCCAGTTCCTGTTTGCCCCGGGCCTGACCGAGGACAAGGTCATGGA
AGCCGCGCTCGACGCAGGCGCCGAGGACGTGGTCGCGCACGACGACGGCT
CGATCGAGGTGATCAGCGCGCCCGCGGATTTCGCCGCGGTGAAAGCCGGG
CTGGAGAAGGCCGGGCTGAAGCCCGAGGTCGCCGAGATCACGATGAAGCC
GACACTCGAGAATGCGCTTGCCGGGGACGACGCGGCGAAGATGCAGAAGC
TCCTCGACGCGCTCGAAGGCCTGGACGACGTCCAGGAGGTCTACACCACC
GCAGTGCTGGACGAGGCCTGA
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