mRNA_P-wetherbeei_contig17982.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17982.1.1
Unique NamemRNA_P-wetherbeei_contig17982.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17982.1.1 vs. uniprot
Match: A0A6H5K5X7_9PHAE (MRG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5X7_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.950e-13
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  100 KFKDGEIVFAHDAGLLYEAKVLSVSTPPEQEPNYLVHYNGWNSRWDKWVVERVLLPDGDHARQLEKELKEKHK 318
            KFK  + V+A D G LYEAKV+ +  P  ++  Y +HY GWNSRWDKWVVE  L+  G  A +++++LK+K K
Sbjct:   17 KFKADDKVYAMDNGDLYEAKVIKLK-PSGEQFTYFLHYMGWNSRWDKWVVESDLMAAGPEALEMQQQLKDKKK 88          
BLAST of mRNA_P-wetherbeei_contig17982.1.1 vs. uniprot
Match: A0A4D9CY10_9STRA (MRG domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CY10_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.040e-11
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 1
Query:  103 FKDGEIVFAHDAGLLYEAKVLSVSTPPE-QEPNYLVHYNGWNSRWDKWVVERVLLPDGDHARQLEKELKEKHKVSEG 330
            FK+ E+V A D+G LYEAK+  V    +   P Y +HY GW S+WD+WV    LLP  +H+ +L+ +L++  K   G
Sbjct:   48 FKEQEVVLAKDSGQLYEAKIQKVQEGKKGSAPQYFIHYQGWKSKWDRWVGAEDLLPKDEHSLKLQAQLRQAAKRRPG 124          
BLAST of mRNA_P-wetherbeei_contig17982.1.1 vs. uniprot
Match: UPI000E7048A1 (uncharacterized protein LOC113333962 isoform X1 n=4 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E7048A1)

HSP 1 Score: 68.6 bits (166), Expect = 3.780e-11
Identity = 36/90 (40.00%), Postives = 51/90 (56.67%), Query Frame = 1
Query:   88 PGPPKFKDGEIVFAHDAGLLYEAKVLSVS--TPPEQEPNYLVHYNGWNSRWDKWVVERVLLPDGDHARQLEKELKEKHKVSEGGEKVMCL 351
            P P  F +GE V A+   L+YEAKV++V    P +    YL+HY GWN +WD+WV    LL   +  ++L++ELK   +  E   K  CL
Sbjct:   30 PSPLSFSEGERVLAYHDPLIYEAKVITVEIKNPYDNTKEYLIHYKGWNKKWDEWVGVERLLKFTEENKKLQEELKLAQQHIEKNPKSGCL 119          
BLAST of mRNA_P-wetherbeei_contig17982.1.1 vs. uniprot
Match: A0A1B6M1E9_9HEMI (Chromo domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6M1E9_9HEMI)

HSP 1 Score: 64.7 bits (156), Expect = 1.300e-10
Identity = 32/87 (36.78%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  100 KFKDGEIVFAHDAG-----LLYEAKVLSVSTPPEQEPN----YLVHYNGWNSRWDKWVVERVLLPDGDHARQLEKELKEKHKVSEGG 333
            KF +GE V  ++       +LY +KVLS++   ++       +L+H+ GWNS WD++V E  +L D +  RQL++EL EK +++ GG
Sbjct:   10 KFSEGEKVLCYEPDPAKTKVLYNSKVLSITVGKDESGKRLVEFLIHFQGWNSTWDRFVTEEYVLKDTEENRQLQRELAEKAQLTAGG 96          
BLAST of mRNA_P-wetherbeei_contig17982.1.1 vs. uniprot
Match: A0A8D8J0K5_CULPI (Male-specific lethal 3 homolog (Fragment) n=3 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8J0K5_CULPI)

HSP 1 Score: 64.3 bits (155), Expect = 1.390e-10
Identity = 36/88 (40.91%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  100 KFKDGEIVFAHD-----AGLLYEAKVLSVSTPPEQEPN------YLVHYNGWNSRWDKWVVERVLLPDGDHARQLEKELKEKHKVSEG 330
            KF DGE V  ++     A +LY++KVL V    ++         YL+H+ GWNS WD+ V E  +L D +  RQL+KEL EK K+ +G
Sbjct:   29 KFMDGEKVLCYEPDPNKARVLYDSKVLEVCEGKDKRGRLNGKIEYLIHFQGWNSSWDRKVGEDFILKDTEENRQLQKELAEKSKLHQG 116          
BLAST of mRNA_P-wetherbeei_contig17982.1.1 vs. uniprot
Match: A0A4Y7L6C4_PAPSO (Chromo domain-containing protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7L6C4_PAPSO)

HSP 1 Score: 66.6 bits (161), Expect = 2.000e-10
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1
Query:   88 PGPPKFKDGEIVFAHDAGLLYEAKVLSVS--TPPEQEPNYLVHYNGWNSRWDKWVVERVLLPDGDHARQLEKELKEKHKVSEGGEKVMCL 351
            P P  F +GE + A+   L+YEAKV++V    P +    YL+HY GWN +WD+WV    LL   +  ++L++ELK   +  E   K  CL
Sbjct:  121 PSPLSFFEGERILAYHDPLIYEAKVVTVEIKNPYDNTKEYLIHYKGWNKKWDEWVGVERLLKFTEENKKLQEELKLAQQHIEKNPKSGCL 210          
BLAST of mRNA_P-wetherbeei_contig17982.1.1 vs. uniprot
Match: A0A1B6C3P2_9HEMI (Chromo domain-containing protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6C3P2_9HEMI)

HSP 1 Score: 63.9 bits (154), Expect = 2.160e-10
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  100 KFKDGEIVFAHDAG-----LLYEAKVLSVSTPPEQEPN----YLVHYNGWNSRWDKWVVERVLLPDGDHARQLEKELKEKHKVSEGG 333
            KF +GE V  ++       +LY +KVL +    ++       +L+H+ GWNS WD++V E  +L D +  RQL+KEL EK +++ GG
Sbjct:   10 KFSEGEKVLCYEPDPAKTKVLYNSKVLQIIVSKDEHGKKLVEFLIHFQGWNSTWDRFVTEEYVLKDTEENRQLQKELAEKAQLTSGG 96          
BLAST of mRNA_P-wetherbeei_contig17982.1.1 vs. uniprot
Match: A0A7S4VJQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VJQ6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.560e-10
Identity = 37/79 (46.84%), Postives = 43/79 (54.43%), Query Frame = 1
Query:   76 EPYMPGPPKFKDGEIVFAHDAGLLYEAKVLSVSTPPEQ-------EPNYLVHYNGWNSRWDKWVVERVLLPDGDHARQL 291
            E  M  P  +   + VFA D   +YEA VL V+  P +       E NY VHY GWNSRWDKW+VE  LL D   AR L
Sbjct:   22 EDEMLKPATYLPDQRVFAKDGEGVYEATVLRVALRPSKKNPKQTHEWNYYVHYLGWNSRWDKWLVESDLLGDTPEARAL 100          
BLAST of mRNA_P-wetherbeei_contig17982.1.1 vs. uniprot
Match: Q7PYF7_ANOGA (AGAP001917-PA n=11 Tax=Cellia TaxID=44534 RepID=Q7PYF7_ANOGA)

HSP 1 Score: 65.9 bits (159), Expect = 3.650e-10
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  100 KFKDGEIVFAHD-----AGLLYEAKVLSVSTPPEQEPN----YLVHYNGWNSRWDKWVVERVLLPDGDHARQLEKELKEKHKVSEGG 333
            KF DGE V  ++     A +LY++KVL VS   ++       YL+H+ GWNS WD+ V E  +L D +  RQL+K+L EK ++ +GG
Sbjct:   12 KFCDGEKVLCYEPDPTKAKVLYDSKVLEVSEGKDKRGRRIVEYLIHFQGWNSSWDRKVSEDFILKDTEENRQLQKDLAEKSQLYQGG 98          
BLAST of mRNA_P-wetherbeei_contig17982.1.1 vs. uniprot
Match: UPI0003C91470 (male-specific lethal 3 homolog isoform X1 n=2 Tax=Tupaia chinensis TaxID=246437 RepID=UPI0003C91470)

HSP 1 Score: 65.9 bits (159), Expect = 3.660e-10
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  100 KFKDGEIVFAHD-----AGLLYEAKVLSVSTPPEQE----PNYLVHYNGWNSRWDKWVVERVLLPDGDHARQLEKELKEK 312
            KF  GE V   +     A +LYEAK+++V    ++E    P YL+H+NGWN  WD+W+ E  LL D D  R+L+++L  K
Sbjct:   10 KFHSGEKVLCFEPDPSKARMLYEAKIINVIVGKDEEGRKIPEYLIHFNGWNRSWDRWMTEGHLLHDTDENRRLQRKLARK 89          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17982.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5X7_9PHAE1.950e-1349.32MRG domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CY10_9STRA1.040e-1141.56MRG domain-containing protein n=2 Tax=Monodopsidac... [more]
UPI000E7048A13.780e-1140.00uncharacterized protein LOC113333962 isoform X1 n=... [more]
A0A1B6M1E9_9HEMI1.300e-1036.78Chromo domain-containing protein (Fragment) n=1 Ta... [more]
A0A8D8J0K5_CULPI1.390e-1040.91Male-specific lethal 3 homolog (Fragment) n=3 Tax=... [more]
A0A4Y7L6C4_PAPSO2.000e-1038.89Chromo domain-containing protein n=3 Tax=Papaver s... [more]
A0A1B6C3P2_9HEMI2.160e-1036.78Chromo domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S4VJQ6_9STRA2.560e-1046.84Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
Q7PYF7_ANOGA3.650e-1041.38AGAP001917-PA n=11 Tax=Cellia TaxID=44534 RepID=Q7... [more]
UPI0003C914703.660e-1041.25male-specific lethal 3 homolog isoform X1 n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17982contigP-wetherbeei_contig17982:865..1215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FRM2
PFAMsDSPc,MRG,Tudor-knot
Model size351
Max annot lvl2759|Eukaryota
KEGG koko:K11339
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.3e-14
EggNOG OGsKOG3001@1|root,KOG3001@2759|Eukaryota
Descriptionhistone H2A acetylation
Cds size351
COG categoryK
BRITEko00000,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186132.6288002-CDS-P-wetherbeei_contig17982:864..12151683186132.6288002-CDS-P-wetherbeei_contig17982:864..1215Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17982 865..1215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17982.1.1prot_P-wetherbeei_contig17982.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17982 865..1215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17982.1.1

>prot_P-wetherbeei_contig17982.1.1 ID=prot_P-wetherbeei_contig17982.1.1|Name=mRNA_P-wetherbeei_contig17982.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
PAAGADGAAAASSSSSSSSPSDPTAEPYMPGPPKFKDGEIVFAHDAGLLY
EAKVLSVSTPPEQEPNYLVHYNGWNSRWDKWVVERVLLPDGDHARQLEKE
LKEKHKVSEGGEKVMCL
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mRNA from alignment at P-wetherbeei_contig17982:865..1215+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17982.1.1 ID=mRNA_P-wetherbeei_contig17982.1.1|Name=mRNA_P-wetherbeei_contig17982.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig17982:865..1215+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCAGCGGGCGCCGATGGGGCCGCCGCTGCCTCCTCCTCCTCCTCCTC CTCCTCCCCCTCCGACCCCACCGCCGAGCCCTACATGCCCGGCCCGCCAA AGTTCAAGGACGGCGAGATTGTCTTCGCCCACGACGCCGGCCTCCTGTAC GAGGCGAAGGTGCTGAGCGTGTCGACGCCGCCGGAGCAGGAGCCCAACTA CTTGGTCCACTACAACGGATGGAACAGCCGCTGGGACAAGTGGGTCGTAG AAAGGGTGCTCCTGCCAGACGGCGACCACGCCCGGCAGCTCGAAAAAGAG CTCAAGGAGAAGCATAAGGTGAGCGAAGGCGGTGAAAAGGTCATGTGTTT G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17982:865..1215+

>mRNA_P-wetherbeei_contig17982.1.1 ID=mRNA_P-wetherbeei_contig17982.1.1|Name=mRNA_P-wetherbeei_contig17982.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig17982:865..1215+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCAGCGGGCGCCGATGGGGCCGCCGCTGCCTCCTCCTCCTCCTCCTC
CTCCTCCCCCTCCGACCCCACCGCCGAGCCCTACATGCCCGGCCCGCCAA
AGTTCAAGGACGGCGAGATTGTCTTCGCCCACGACGCCGGCCTCCTGTAC
GAGGCGAAGGTGCTGAGCGTGTCGACGCCGCCGGAGCAGGAGCCCAACTA
CTTGGTCCACTACAACGGATGGAACAGCCGCTGGGACAAGTGGGTCGTAG
AAAGGGTGCTCCTGCCAGACGGCGACCACGCCCGGCAGCTCGAAAAAGAG
CTCAAGGAGAAGCATAAGGTGAGCGAAGGCGGTGAAAAGGTCATGTGTTT
G
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