mRNA_P-wetherbeei_contig1797.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1797.4.1
Unique NamemRNA_P-wetherbeei_contig1797.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1797.4.1 vs. uniprot
Match: A0A835ZBR6_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR6_9STRA)

HSP 1 Score: 202 bits (514), Expect = 3.740e-63
Identity = 93/133 (69.92%), Postives = 109/133 (81.95%), Query Frame = 1
Query:    1 TKGELDLVRALGWDVSRVSAMHFLGYYLYRGVTFPEDQCQGRPLVDKVVRYVKKYVEFFANLCQQDHRFLDHTQSAIAAASVLSARRALCITPLWRPELVKLTRMDEIDMKACAEQLWEFYEKMFPAHKPLRT 399
            T+GEL L R LGWD+SRV+AMHFLGYYL++GVTF  D+CQGR LV KV RY+KKYVEFFANLCQQD+ F  H  S IAAAS+L+ARRALCI PLWRPEL +LT     D++ACAE++W FYE MFP H+PLRT
Sbjct:   96 TQGELSLARGLGWDISRVTAMHFLGYYLHQGVTFLSDECQGRALVTKVTRYMKKYVEFFANLCQQDYSFQRHRPSTIAAASILAARRALCIAPLWRPELERLTGCAPRDIQACAEEVWAFYEAMFPTHQPLRT 228          
BLAST of mRNA_P-wetherbeei_contig1797.4.1 vs. uniprot
Match: D8LIL5_ECTSI (Cyclin D1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL5_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 2.470e-49
Identity = 81/130 (62.31%), Postives = 99/130 (76.15%), Query Frame = 1
Query:    1 TKGELDLVR-ALGWDVSRVSAMHFLGYYLYRGVTFPEDQCQGRPLVDKVVRYVKKYVEFFANLCQQDHRFLDHTQSAIAAASVLSARRALCITPLWRPELVKLTRMDEIDMKACAEQLWEFYEKMFPAHK 387
            T+GELDLV+  L WDVSRV+AMHFLGYY  +GVT P+D CQGR LV+KVV Y+ KYV+FFANLCQQ ++F  +  S IAAA++L+ARRALCI P+WR EL  LT     ++  C E LW FYEKMFP H+
Sbjct:  154 TRGELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAAAAILTARRALCIKPMWRDELTDLTGYKLEEISDCGEDLWHFYEKMFPLHR 283          
BLAST of mRNA_P-wetherbeei_contig1797.4.1 vs. uniprot
Match: A0A7S0A123_9STRA (Hypothetical protein n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0A123_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.460e-38
Identity = 62/139 (44.60%), Postives = 96/139 (69.06%), Query Frame = 1
Query:    4 KGELDLVRALGWDVSRVSAMHFLGYYLYRGVTFPEDQCQGRPLVDKVVRYVKKYVEFFANLCQQDHRFLDHTQSAIAAASVLSARRALCITPLWRPELVKLTRMDEIDMKACAEQLWEFYEKMFPAHKPLRTESPKCVS 420
            +GELD++R LGW +  +  +HF+GY+L +G  F +D  QGRPL++K+ +YVKKY EFF NL  Q++ F  +  S +AAA +L++R AL + P WRPELV+LT  +E D+ +  + +W +Y++ FP H   R+ SP+ V+
Sbjct:   33 EGELDVLRYLGWRLRAIPPIHFIGYFLAKGSVFVDDTWQGRPLIEKIPKYVKKYTEFFCNLTLQEYSFQQYLPSLLAAAILLASRTALQLEPRWRPELVRLTGYEEQDLSSAFQHVWSYYDEQFPGHCS-RSISPRGVN 170          
BLAST of mRNA_P-wetherbeei_contig1797.4.1 vs. uniprot
Match: A0A7S1GP06_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GP06_CYCTE)

HSP 1 Score: 133 bits (335), Expect = 6.200e-37
Identity = 62/143 (43.36%), Postives = 94/143 (65.73%), Query Frame = 1
Query:    4 KGELDLVRALGWDVSRVSAMHFLGYYLYRGVTFPEDQCQGRPLVDKVVRYVKKYVEFFANLCQQDHRFLDHTQSAIAAASVLSARRALCITPLWRPELVKLTRMDEIDMKACAEQLWEFYEKMFPAHKPLRTESPKCVSDFDA 432
            +GEL+++R LGW +  V A+H +GY+L +G TF  D  QGR L++K+ +YVKKY EFF NL  Q++ F  +  + +A+A +L+AR AL + P WRPELV+LT  +E ++    + +W +YE+ FP H   R  SP+ V+   A
Sbjct:   29 EGELEVLRYLGWKLRAVPALHVVGYFLEKGTTFQNDTWQGRALIEKIPKYVKKYAEFFCNLTLQEYAFQQYLPTVLASAVLLAARVALQLEPSWRPELVRLTGYEENEIAPVFQHVWRYYEEQFPGHG-ARAVSPRSVAHEQA 170          
BLAST of mRNA_P-wetherbeei_contig1797.4.1 vs. uniprot
Match: A0A7S1E947_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E947_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.040e-36
Identity = 61/138 (44.20%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    7 GELDLVRALGWDVSRVSAMHFLGYYLYRGVTFPEDQCQGRPLVDKVVRYVKKYVEFFANLCQQDHRFLDHTQSAIAAASVLSARRALCITPLWRPELVKLTRMDEIDMKACAEQLWEFYEKMFPAHKPLRTESPKCVS 420
            GE++++R LGW +     +H +GY+L +GVTF +D  QGRPL++K+ RYVKKY EFF NL  Q++ F  +  + +AAA +L++R AL + P WRPEL KLT  +E ++    + +W +YE+ FP H   R+ SP+ V+
Sbjct:   28 GEVEVLRHLGWRLRAFPPIHVIGYFLAKGVTFVDDTWQGRPLIEKIPRYVKKYAEFFCNLALQEYAFQQYLPTQLAAAVLLASRVALQLEPRWRPELAKLTGHEEKEITTIFQHVWSYYEEQFPGHGS-RSISPRSVA 164          
BLAST of mRNA_P-wetherbeei_contig1797.4.1 vs. uniprot
Match: A0A7S2FS20_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FS20_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.160e-35
Identity = 63/140 (45.00%), Postives = 88/140 (62.86%), Query Frame = 1
Query:   10 ELDLVRALGWDVSRVSAMHFLGYYLYRGVTFPEDQCQGRPLVDKVVRYVKKYVEFFANLCQQDHRFLDHTQSAIAAASVLSARRALCITPLWRPELVKLTRMDEIDMKACAEQLWEFYEKMFPAHKPLRTESPKCVSDFD 429
            E+ +++ L +++S V+ MH + Y+  RGV F +D   GR L+DK+ RYV+KY EFFANLC QD+ +   + S +AAA V SAR AL + PLWRPEL +LT     D      ++W  Y   FPAH    + SPK V+DF+
Sbjct:   21 EIYVLQRLEYNMSMVTPMHCITYFNGRGVVFKDDSWNGRALIDKIPRYVQKYTEFFANLCMQDYLYQQFSPSLLAAAIVYSARHALSVAPLWRPELEELTGHCTEDAHQVFLKIWGLYSDTFPAHARRTSASPKSVTDFE 160          
BLAST of mRNA_P-wetherbeei_contig1797.4.1 vs. uniprot
Match: A0A1Z5JHV1_FISSO (Cyclin N-terminal domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHV1_FISSO)

HSP 1 Score: 130 bits (328), Expect = 2.960e-34
Identity = 62/137 (45.26%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    7 GELDLVRALGWDVSRVSAMHFLGYYLYRGVTFPEDQCQGRPLVDKVVRYVKKYVEFFANLCQQDHRFLDHTQSAIAAASVLSARRALCITPLWRPELVKLTRMDEIDMKACAEQLWEFYEKMFPAHKPLRTESPKCV 417
            GE+++++ LGW +    A+H +GY L +G  F +D  QGR L+ K+ RY+KKY EFF NL  QD+ F  +  S +AAA+V+++R AL I P WRPELV+ T  DE D+      LW +YE+ FP H   R+ SP+ V
Sbjct:  182 GEVEILKRLGWQLRAFPALHVVGYILAKGACFVDDAWQGRHLIPKIPRYLKKYAEFFCNLALQDYSFQQYRPSILAAAAVMASRVALQIEPKWRPELVRRTGYDEFDILPIFNHLWSYYEEQFPGHVS-RSISPRSV 317          
BLAST of mRNA_P-wetherbeei_contig1797.4.1 vs. uniprot
Match: A0A7S0FMS6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMS6_9STRA)

HSP 1 Score: 125 bits (315), Expect = 3.790e-34
Identity = 53/138 (38.41%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    7 GELDLVRALGWDVSRVSAMHFLGYYLYRGVTFPEDQCQGRPLVDKVVRYVKKYVEFFANLCQQDHRFLDHTQSAIAAASVLSARRALCITPLWRPELVKLTRMDEIDMKACAEQLWEFYEKMFPAHKPLRTESPKCVS 420
            GE+++++ L W +  + A+H +GYYL +G  F +D  QGR L++K+ RYVKKY +FF NL  Q++ F  +  S +AAA ++++R AL + P WRPE+  LT  +E ++    + +W++Y + FP  +  R+ SP+ V+
Sbjct:   13 GEVEVLKHLNWTLRAIPALHVVGYYLSKGAVFVDDTWQGRDLIEKIPRYVKKYADFFCNLTMQEYSFQKYLPSQLAAAILMASREALSVAPRWRPEMTALTGYEESEITPIFDHVWKYYAEQFPDRQDPRSISPRGVN 150          
BLAST of mRNA_P-wetherbeei_contig1797.4.1 vs. uniprot
Match: A0A7S2LEN5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LEN5_9STRA)

HSP 1 Score: 130 bits (326), Expect = 4.540e-34
Identity = 58/138 (42.03%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    4 KGELDLVRALGWDVSRVSAMHFLGYYLYRGVTFPEDQCQGRPLVDKVVRYVKKYVEFFANLCQQDHRFLDHTQSAIAAASVLSARRALCITPLWRPELVKLTRMDEIDMKACAEQLWEFYEKMFPAHKPLRTESPKCV 417
            +GEL+++R LGW +  +  +HF+ +Y  +GV F  D+ Q R +++K+ RYV+KY EFF NLC QD+ F  +  S +AAA ++++R+ALCI PLWRPEL  +T   +  +      +W++YE+ FP H  +R  SP  V
Sbjct:  167 RGELEVLRLLGWQLRALPPVHFVNFYQAKGVLFENDRWQKRAMMEKIPRYVRKYAEFFCNLCLQDYSFSQYRPSVLAAAIIVASRQALCIEPLWRPELQAVTGFTQEQVHPLFLHVWQYYEEQFPGHG-VRVPSPDNV 303          
BLAST of mRNA_P-wetherbeei_contig1797.4.1 vs. uniprot
Match: A0A448Z377_9STRA (Cyclin N-terminal domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z377_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.620e-34
Identity = 58/141 (41.13%), Postives = 95/141 (67.38%), Query Frame = 1
Query:    4 KGELDLVRALGWDVSRVSAMHFLGYYLYRGVTFPEDQCQGRPLVDKVVRYVKKYVEFFANLCQQDHRFLDHTQSAIAAASVLSARRALCITPLWRPELVKLTRMDEIDMKACAEQLWEFYEKMFPAHKPLRTESPKCVSDF 426
            +GEL+++R L W +  +  +H +GY+L +GVTF +D  QGR L++K+ RYVKKY EFF NL  Q++ F  +  + + AA +L++R AL I P W+PEL++LT  +E+++     ++W +YE+ FP H   R+ SP+ V++ 
Sbjct:  184 EGELEVLRYLKWQLRAIPPIHVVGYFLAKGVTFTDDSWQGRALIEKIPRYVKKYAEFFCNLTLQEYAFQQYLPTLLGAAIILASRVALNIEPRWKPELMELTGYNEVEITDAFHRVWSYYEEQFPGHGS-RSISPRSVTNM 323          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1797.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A835ZBR6_9STRA3.740e-6369.92Cyclin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
D8LIL5_ECTSI2.470e-4962.31Cyclin D1 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A7S0A123_9STRA1.460e-3844.60Hypothetical protein n=1 Tax=Rhizosolenia setigera... [more]
A0A7S1GP06_CYCTE6.200e-3743.36Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1E947_9STRA1.040e-3644.20Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
A0A7S2FS20_9STRA4.160e-3545.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1Z5JHV1_FISSO2.960e-3445.26Cyclin N-terminal domain-containing protein n=2 Ta... [more]
A0A7S0FMS6_9STRA3.790e-3438.41Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2LEN5_9STRA4.540e-3442.03Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A448Z377_9STRA4.620e-3441.13Cyclin N-terminal domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1797contigP-wetherbeei_contig1797:5863..6618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog35128.Thaps21159
PFAMsCyclin_C,Cyclin_N
Model size444
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1e-34
EggNOG OGsCOG5024@1|root,KOG0654@2759|Eukaryota,2XASD@2836|Bacillariophyta
Ec32 ortholog descriptioncyclin D1
Ec32 orthologEc-11_004300.1
DescriptionCyclin_C
Cds size444
COG categoryD
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186132.5070329-CDS-P-wetherbeei_contig1797:5862..61651683186132.5070329-CDS-P-wetherbeei_contig1797:5862..6165Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1797 5863..6165 -
1683186132.5199163-CDS-P-wetherbeei_contig1797:6477..66181683186132.5199163-CDS-P-wetherbeei_contig1797:6477..6618Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1797 6478..6618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1797.4.1prot_P-wetherbeei_contig1797.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1797 5863..6618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1797.4.1

>prot_P-wetherbeei_contig1797.4.1 ID=prot_P-wetherbeei_contig1797.4.1|Name=mRNA_P-wetherbeei_contig1797.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
TKGELDLVRALGWDVSRVSAMHFLGYYLYRGVTFPEDQCQGRPLVDKVVR
YVKKYVEFFANLCQQDHRFLDHTQSAIAAASVLSARRALCITPLWRPELV
KLTRMDEIDMKACAEQLWEFYEKMFPAHKPLRTESPKCVSDFDAPGV*
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mRNA from alignment at P-wetherbeei_contig1797:5863..6618-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1797.4.1 ID=mRNA_P-wetherbeei_contig1797.4.1|Name=mRNA_P-wetherbeei_contig1797.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig1797:5863..6618- (Phaeothamnion wetherbeei SAG_119_79)
ACCAAGGGCGAGCTCGACCTGGTGCGGGCGCTGGGTTGGGATGTGAGCCG TGTGTCAGCTATGCACTTCCTGGGGTACTACCTTTACCGCGGCGTCACGT TTCCTGAGGACCAGTGCCAGGGGCGCCCGCTCGTCGACAAGGTCAGTCAG TAAAAAGCAGTTTTGATATCTGCAGAAAGAGAGAGGCAAAGTGACGGAAA GAGAATGAGAGAGAGACGAAAGGAAGAGAAAGAATGAAACGGAAGGGCGT TTCGGGCCTTTTGTGAATGGAGCTAGAGAATTGCCCCGGGCACAGCAGGC TTCGGTACGGGGGGCGCAGTCGCAAAGCGGGGCGGCGTCTCCTTCAGAGA GCCGCGCCGTCACGGAATGCTAATCTCTTTCACTTTCTGAGAGCTAACGT CACTGATGCGCCGAATCTTTTCCTTCCGTTTTCCGGCTCTCCTGCACAAA CAGGTGGTGCGCTACGTCAAGAAGTACGTCGAGTTTTTCGCCAACCTCTG CCAGCAGGACCACCGCTTCCTGGACCACACGCAGTCGGCCATCGCCGCCG CCTCAGTGCTCTCGGCGCGCCGCGCGCTCTGCATCACGCCGCTGTGGCGG CCCGAGCTGGTCAAGCTGACGCGCATGGACGAAATCGACATGAAAGCGTG CGCCGAACAGCTCTGGGAGTTCTACGAGAAGATGTTCCCGGCGCACAAGC CCCTGCGGACCGAGTCCCCCAAGTGTGTCAGCGACTTCGATGCCCCCGGC GTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1797:5863..6618-

>mRNA_P-wetherbeei_contig1797.4.1 ID=mRNA_P-wetherbeei_contig1797.4.1|Name=mRNA_P-wetherbeei_contig1797.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig1797:5863..6618- (Phaeothamnion wetherbeei SAG_119_79)
ACCAAGGGCGAGCTCGACCTGGTGCGGGCGCTGGGTTGGGATGTGAGCCG
TGTGTCAGCTATGCACTTCCTGGGGTACTACCTTTACCGCGGCGTCACGT
TTCCTGAGGACCAGTGCCAGGGGCGCCCGCTCGTCGACAAGGTGGTGCGC
TACGTCAAGAAGTACGTCGAGTTTTTCGCCAACCTCTGCCAGCAGGACCA
CCGCTTCCTGGACCACACGCAGTCGGCCATCGCCGCCGCCTCAGTGCTCT
CGGCGCGCCGCGCGCTCTGCATCACGCCGCTGTGGCGGCCCGAGCTGGTC
AAGCTGACGCGCATGGACGAAATCGACATGAAAGCGTGCGCCGAACAGCT
CTGGGAGTTCTACGAGAAGATGTTCCCGGCGCACAAGCCCCTGCGGACCG
AGTCCCCCAAGTGTGTCAGCGACTTCGATGCCCCCGGCGTCTGA
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