mRNA_P-wetherbeei_contig17963.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17963.1.1
Unique NamemRNA_P-wetherbeei_contig17963.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17963.1.1 vs. uniprot
Match: L8FT05_PSED2 (TonB_C domain-containing protein (Fragment) n=1 Tax=Pseudogymnoascus destructans (strain ATCC MYA-4855 / 20631-21) TaxID=658429 RepID=L8FT05_PSED2)

HSP 1 Score: 167 bits (422), Expect = 8.020e-51
Identity = 87/105 (82.86%), Postives = 99/105 (94.29%), Query Frame = 1
Query:   97 KAAQKSESKQHQQAAASAKGRFDPNPIYRAKPAYPSGARASKIEGYVVVAYSVSASGAVTNVSVVSASPPGVFNAATVAAVRQWRFKPSPQGASGRRTTVRFKLK 411
            K+A+KS+S + Q AAASAKGRFDPNP+YRA PAYP+GAR+ K+EGYVVV+YSVSASGAV+NVSVVSASPPG+FNAATVAAVRQWRFKPSPQGA GRRTTVRFKL+
Sbjct:   29 KSAKKSDSSKQQDAAASAKGRFDPNPVYRASPAYPAGARSQKLEGYVVVSYSVSASGAVSNVSVVSASPPGIFNAATVAAVRQWRFKPSPQGAQGRRTTVRFKLR 133          
BLAST of mRNA_P-wetherbeei_contig17963.1.1 vs. uniprot
Match: A0A1G0KSD2_9GAMM (Protein TonB n=1 Tax=Gammaproteobacteria bacterium RIFOXYD12_FULL_61_37 TaxID=1798308 RepID=A0A1G0KSD2_9GAMM)

HSP 1 Score: 90.5 bits (223), Expect = 1.400e-19
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 1
Query:   13 EETPPEPVKEKTEPVKKPXXXXXXARETKAAQKSESKQHQQAA----ASAKGRFDPNPIYRAKPAYPSGARASKIEGYVVVAYSVSASGAVTNVSVVSASPPGVFNAATVAAVRQWRFKPSPQGASGRRTTVRFKLK 411
            E+ PPEP++    P K+         + +   K E K   + A    A+A  RFD +P+YR KP+YP  AR  +IEGYV++ Y ++ SGAV +V V+ ASPPG+F +A + AVR+WR++P P    G +T + F L+
Sbjct:  102 EDIPPEPIEAPLPPAKEKPALVKAVPKKEEKPKDEGKTVAKKAVASSAAAMARFDSSPLYRPKPSYPFSARRGRIEGYVLLRYCIAKSGAVVDVGVIGASPPGIFESAALDAVRRWRYQPQPIDRPGIKTKITFVLR 238          
BLAST of mRNA_P-wetherbeei_contig17963.1.1 vs. uniprot
Match: A0A874BHM8_9GAMM (Protein TonB n=1 Tax=gamma proteobacterium SS-5 TaxID=947516 RepID=A0A874BHM8_9GAMM)

HSP 1 Score: 80.1 bits (196), Expect = 1.200e-15
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query:  142 ASAKGRFDPNPIYRAKPAYPSGARASKIEGYVVVAYSVSASGAVTNVSVVSASPPGVFNAATVAAVRQWRFKPSPQGASGRRTTVRFKLK 411
            A AK RF   P+YR KP+YP  A+   IEG+V+V+++V+ SGAV N  VVSA P GVF+   ++AV++WR+   P    G RT +RF+L+
Sbjct:  147 ARAKARFSNRPLYRPKPSYPRSAQRKGIEGWVLVSFTVTRSGAVRNPRVVSAKPRGVFDRQALSAVKRWRYDKQPVDRHGIRTRIRFQLR 236          
BLAST of mRNA_P-wetherbeei_contig17963.1.1 vs. uniprot
Match: A0A5Q0EIJ5_9GAMM (Protein TonB n=1 Tax=gamma proteobacterium SS-5 TaxID=947516 RepID=A0A5Q0EIJ5_9GAMM)

HSP 1 Score: 75.5 bits (184), Expect = 9.010e-15
Identity = 39/84 (46.43%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  160 FDPNPIYRAKPAYPSGARASKIEGYVVVAYSVSASGAVTNVSVVSASPPGVFNAATVAAVRQWRFKPSPQGASGRRTTVRFKLK 411
            F   P+YR KP+YP  A+   IEG+V+V+++V+ SGAV N  VVSA P GVF+   ++AV++WR+   P    G RT +RF+L+
Sbjct:   52 FSNRPLYRPKPSYPRSAQRKGIEGWVLVSFTVTRSGAVRNPRVVSAKPRGVFDRQALSAVKRWRYDKQPVDRHGIRTRIRFQLR 135          
BLAST of mRNA_P-wetherbeei_contig17963.1.1 vs. uniprot
Match: A0A2D4SCU9_9GAMM (Protein TonB n=1 Tax=Salinisphaeraceae bacterium TaxID=2026789 RepID=A0A2D4SCU9_9GAMM)

HSP 1 Score: 74.7 bits (182), Expect = 1.270e-13
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 1
Query:  175 IYRAKPAYPSGARASKIEGYVVVAYSVSASGAVTNVSVVSASPPGVFNAATVAAVRQWRFKPSPQG----ASGRRTTVRFKL 408
            + R  P YPS A+ +KIEGYV + ++V+  G+V+++SV+ A PP +FN A +AA+++WRFKP  QG    A+  R T+RF+L
Sbjct:  151 VVRVPPVYPSTAKRAKIEGYVTLEFTVAPDGSVSDISVLDAQPPRMFNQAAIAAIQRWRFKPRVQGGQRVAAKARQTIRFEL 232          
BLAST of mRNA_P-wetherbeei_contig17963.1.1 vs. uniprot
Match: UPI000E6AD253 (energy transducer TonB n=1 Tax=Indioceanicola profundi TaxID=2220096 RepID=UPI000E6AD253)

HSP 1 Score: 69.7 bits (169), Expect = 6.140e-12
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  172 PIYRAKPAYPSGARASKIEGYVVVAYSVSASGAVTNVSVVSASPPGVFNAATVAAVRQWRFKPS-----PQGASGRRTTVRFKL 408
            P++R  P YP  A +  IEGYV++ ++++ +GAVTN+ VV ASPPG+F+ A + A+ +W++KP      P    G R  + FKL
Sbjct:  119 PLFRMNPQYPDRAASRGIEGYVIMEFTITETGAVTNIQVVEASPPGIFDRAAIRAMERWKYKPKIVDGKPVPRHGVRNQLTFKL 202          
BLAST of mRNA_P-wetherbeei_contig17963.1.1 vs. uniprot
Match: A0A6L8APC2_9GAMM (Protein TonB n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8APC2_9GAMM)

HSP 1 Score: 65.5 bits (158), Expect = 6.160e-11
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  175 IYRAKPAYPSGARASKIEGYVVVAYSVSASGAVTNVSVVSASPPGVFNAATVAAVRQWRFKP-----SPQGASGRRTTVRFKL 408
            I  A P YP+ A+A  IEG+V + Y +++ G V N+ V+ +SPPGVF+AA +AAV QWR++      +P   SG  +T+RF+L
Sbjct:   40 IQDAGPVYPATAKAQGIEGWVRLRYDIASDGRVENLRVLESSPPGVFDAAAMAAVAQWRYRAPVIDGAPSAVSGVVSTLRFEL 122          
BLAST of mRNA_P-wetherbeei_contig17963.1.1 vs. uniprot
Match: A0A6N9CQI3_9GAMM (Protein TonB n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N9CQI3_9GAMM)

HSP 1 Score: 65.1 bits (157), Expect = 8.480e-11
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  184 AKPAYPSGARASKIEGYVVVAYSVSASGAVTNVSVVSASPPGVFNAATVAAVRQWRFKP-----SPQGASGRRTTVRFKL 408
            A P YP  ARA  IEG+V + Y +++ G V N+ V+ +SPPGVF+AA +AAV QWR++      +P   SG  +T+RF+L
Sbjct:   42 AGPLYPEAARAQGIEGWVRLRYDIASDGRVENLRVLESSPPGVFDAAAMAAVAQWRYRAPIIDGAPSTVSGVVSTLRFEL 121          
BLAST of mRNA_P-wetherbeei_contig17963.1.1 vs. uniprot
Match: A0A2G2LYU3_9PROT (Protein TonB n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2LYU3_9PROT)

HSP 1 Score: 64.3 bits (155), Expect = 9.840e-11
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  181 RAKPAYPSGARASKIEGYVVVAYSVSASGAVTNVSVVSASPPGVFNAATVAAVRQWRFKPSPQGASGRRTTVRFKL 408
            R  P YP GA   KIEG+VVV Y+V   G V++V+V  A P GVF+ A + AV +W+++P      G R  + FKL
Sbjct:   32 RVAPVYPRGAERRKIEGHVVVTYTVDTEGKVSDVAVAEAVPEGVFDDAAMRAVSRWKYEPPASVVEGARARITFKL 107          
BLAST of mRNA_P-wetherbeei_contig17963.1.1 vs. uniprot
Match: A0A6P2BGC7_9GAMM (Protein TonB n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6P2BGC7_9GAMM)

HSP 1 Score: 62.8 bits (151), Expect = 1.260e-9
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:  184 AKPAYPSGARASKIEGYVVVAYSVSASGAVTNVSVVSASPPGVFNAATVAAVRQWRFKPSPQGASGR-----RTTVRFKL 408
            A+P YP  A+   +EG V + Y+V+ASG VT++ V++A PPGVF+ A +AAVR WR++P   G          +T+RF+L
Sbjct:   76 AQPVYPQDAKDRGVEGEVTLIYTVTASGHVTDLRVLAAEPPGVFDEAALAAVRTWRYRPPRSGGEPTVVESVGSTIRFRL 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17963.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8FT05_PSED28.020e-5182.86TonB_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A1G0KSD2_9GAMM1.400e-1940.15Protein TonB n=1 Tax=Gammaproteobacteria bacterium... [more]
A0A874BHM8_9GAMM1.200e-1547.78Protein TonB n=1 Tax=gamma proteobacterium SS-5 Ta... [more]
A0A5Q0EIJ5_9GAMM9.010e-1546.43Protein TonB n=1 Tax=gamma proteobacterium SS-5 Ta... [more]
A0A2D4SCU9_9GAMM1.270e-1346.34Protein TonB n=1 Tax=Salinisphaeraceae bacterium T... [more]
UPI000E6AD2536.140e-1241.67energy transducer TonB n=1 Tax=Indioceanicola prof... [more]
A0A6L8APC2_9GAMM6.160e-1144.58Protein TonB n=2 Tax=Gammaproteobacteria bacterium... [more]
A0A6N9CQI3_9GAMM8.480e-1146.25Protein TonB n=1 Tax=Gammaproteobacteria bacterium... [more]
A0A2G2LYU3_9PROT9.840e-1144.74Protein TonB n=1 Tax=Robiginitomaculum sp. TaxID=2... [more]
A0A6P2BGC7_9GAMM1.260e-943.75Protein TonB n=1 Tax=Gammaproteobacteria bacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17963contigP-wetherbeei_contig17963:2..415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog655981.L8FT05
PFAMsTonB_C,TonB_N
Model size414
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.31e-51
EggNOG OGs2D3E7@1|root,2SR8V@2759|Eukaryota,3ACID@33154|Opisthokonta
DescriptionGram-negative bacterial TonB protein C-terminal
Cds size414
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186132.1192448-CDS-P-wetherbeei_contig17963:1..4151683186132.1192448-CDS-P-wetherbeei_contig17963:1..415Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17963 2..415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17963.1.1prot_P-wetherbeei_contig17963.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17963 2..415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17963.1.1

>prot_P-wetherbeei_contig17963.1.1 ID=prot_P-wetherbeei_contig17963.1.1|Name=mRNA_P-wetherbeei_contig17963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
EKPVEETPPEPVKEKTEPVKKPKEKTEKARETKAAQKSESKQHQQAAASA
KGRFDPNPIYRAKPAYPSGARASKIEGYVVVAYSVSASGAVTNVSVVSAS
PPGVFNAATVAAVRQWRFKPSPQGASGRRTTVRFKLK*
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mRNA from alignment at P-wetherbeei_contig17963:2..415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17963.1.1 ID=mRNA_P-wetherbeei_contig17963.1.1|Name=mRNA_P-wetherbeei_contig17963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig17963:2..415+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAAGCCTGTCGAGGAAACACCTCCCGAGCCGGTCAAGGAGAAGACGGA GCCCGTCAAGAAGCCGAAGGAAAAAACCGAGAAGGCGCGCGAGACCAAGG CGGCTCAGAAATCCGAGAGCAAGCAGCACCAGCAGGCGGCGGCCTCGGCC AAGGGGCGGTTCGATCCCAATCCCATCTACCGCGCCAAGCCGGCCTATCC GTCCGGCGCGCGGGCCAGCAAGATCGAGGGGTATGTCGTTGTTGCGTACT CAGTGTCGGCGTCGGGGGCGGTGACGAACGTGAGCGTCGTCTCCGCGAGT CCGCCCGGCGTCTTCAATGCGGCAACCGTGGCAGCCGTTCGGCAGTGGCG CTTCAAGCCGTCGCCGCAGGGGGCGAGCGGTCGGCGTACGACGGTCAGGT TCAAGCTGAAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17963:2..415+

>mRNA_P-wetherbeei_contig17963.1.1 ID=mRNA_P-wetherbeei_contig17963.1.1|Name=mRNA_P-wetherbeei_contig17963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig17963:2..415+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAAGCCTGTCGAGGAAACACCTCCCGAGCCGGTCAAGGAGAAGACGGA
GCCCGTCAAGAAGCCGAAGGAAAAAACCGAGAAGGCGCGCGAGACCAAGG
CGGCTCAGAAATCCGAGAGCAAGCAGCACCAGCAGGCGGCGGCCTCGGCC
AAGGGGCGGTTCGATCCCAATCCCATCTACCGCGCCAAGCCGGCCTATCC
GTCCGGCGCGCGGGCCAGCAAGATCGAGGGGTATGTCGTTGTTGCGTACT
CAGTGTCGGCGTCGGGGGCGGTGACGAACGTGAGCGTCGTCTCCGCGAGT
CCGCCCGGCGTCTTCAATGCGGCAACCGTGGCAGCCGTTCGGCAGTGGCG
CTTCAAGCCGTCGCCGCAGGGGGCGAGCGGTCGGCGTACGACGGTCAGGT
TCAAGCTGAAGTAG
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