mRNA_P-wetherbeei_contig1796.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1796.2.1
Unique NamemRNA_P-wetherbeei_contig1796.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1796.2.1 vs. uniprot
Match: D7FT75_ECTSI (Vacuolar protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT75_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.130e-34
Identity = 81/99 (81.82%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:    1 MAKVLEALIAKGRRVKRPREQKEVAFGLADLSTHEELHDRIVKKGGIRSLTELLKRSQDVEAQRFAALAIANCASAVFTRVQMEIVGLGGIEALIGLLK 297
            MAKVLEALIAKGRRV+RPREQKEVAFGLADLSTHEELHDRIVKKGGIRSL ELL+RSQD EAQRF+AL IANCASAVFTR+Q  IV  G +E +I  +K
Sbjct:    1 MAKVLEALIAKGRRVRRPREQKEVAFGLADLSTHEELHDRIVKKGGIRSLLELLRRSQDAEAQRFSALCIANCASAVFTRLQ--IVEDGVLEPMINFIK 97
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BLAST of mRNA_P-wetherbeei_contig1796.2.1 vs. uniprot
Match: A0A835Z6R1_9STRA (Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R1_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.830e-34
Identity = 79/101 (78.22%), Postives = 88/101 (87.13%), Query Frame = 1 
Query:    1 MAKVLEALIAKGRRVKRPREQKEVAFGLADLSTHEELHDRIVKKGGIRSLTELLKRSQDVEAQRFAALAIANCASAVFTRVQMEIVGLGGIEALIGLLKAE 303
            MAKVLEALIAKGRRVKRPREQKEVAFGLADLSTHEELHDRIVKKGG+R++ +LL+RSQD EAQRF ALAIANCAS++FTR    IV  G +E LIG +K E
Sbjct:    1 MAKVLEALIAKGRRVKRPREQKEVAFGLADLSTHEELHDRIVKKGGVRTVVDLLRRSQDAEAQRFCALAIANCASSIFTRTH--IVEDGVLEPLIGFVKNE 99
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BLAST of mRNA_P-wetherbeei_contig1796.2.1 vs. uniprot
Match: A0A8J2SEI2_9STRA (Vacuolar protein 8 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEI2_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.110e-27
Identity = 72/101 (71.29%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 MAKVLEALIAKGRRVKRPREQKEVAFGLADLSTHEELHDRIVKKGGIRSLTELLKRSQDVEAQRFAALAIANCASAVFTRVQMEIVGLGGIEALIGLLKAE 303
            MAKVLEALIAKGRRV+RPREQKEVAFGL DLSTH ELH+RIVKKGGI+SL  LL  SQD EAQRFAALAI NCASA + R  + IV  G +  L+    AE
Sbjct:    1 MAKVLEALIAKGRRVRRPREQKEVAFGLCDLSTHTELHERIVKKGGIKSLVNLLAGSQDNEAQRFAALAIGNCASASYNR--LAIVAEGCLTTLVDYTAAE 99
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BLAST of mRNA_P-wetherbeei_contig1796.2.1 vs. uniprot
Match: A0A2R5GK93_9STRA (Vacuolar protein 8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GK93_9STRA)

HSP 1 Score: 122 bits (307), Expect = 3.720e-27
Identity = 83/126 (65.87%), Postives = 97/126 (76.98%), Query Frame = 1 
Query:    1 MAKVLEALIAKGRRVKRPREQKEVAFGLADLSTHEELHDRIVKKGGIRSLTELLKRSQDVEAQRFAALAIANCASAVFTRVQMEIVGLGGIEALIGLLKAEXXXXXXXXXXXXSNIGANANHREQI 378
            MAKVLE LIA+GRRV+RPREQ+EVAFGLADLSTH ++H R+V+KG   SL +LL+RS D+E QRF+ALA+ N AS    RV+MEIV L  IEALI LL+  XXXXXXXXXXXX     N  HR QI
Sbjct:    1 MAKVLETLIARGRRVRRPREQREVAFGLADLSTHPDIHTRMVQKGACTSLIQLLERSGDLETQRFSALALGNMASTAENRVKMEIVHLNAIEALIMLLRXXXXXXXXXXXXXXXXXXXNEQHRAQI 126
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BLAST of mRNA_P-wetherbeei_contig1796.2.1 vs. uniprot
Match: A0A7S2P367_9STRA (Vacuolar protein 8 n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P367_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.910e-19
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 MAKVLEALIAKGRRVKRPREQKEVAFGLADLSTHEELHDRIVKKGGIRSLTELLKRSQDVEAQRFAALAIANCASAVFTRV 243
            MAK LEAL+A+GRRV+RPREQ+EVAFGLADLST  E H+RIVKKGGI++L  LL  S D++AQRFAALA+AN ASA   R+
Sbjct:    1 MAKRLEALVAQGRRVRRPREQREVAFGLADLSTKAEAHERIVKKGGIKTLVGLL-HSTDMDAQRFAALAVANVASAEVNRM 80
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BLAST of mRNA_P-wetherbeei_contig1796.2.1 vs. uniprot
Match: A0A812KVL6_9DINO (Vacuolar protein 8 (Fragment) n=5 Tax=Sar TaxID=2698737 RepID=A0A812KVL6_9DINO)

HSP 1 Score: 94.0 bits (232), Expect = 2.280e-17
Identity = 48/88 (54.55%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:    1 MAKVLEALIAKGRRVKRPREQKEVAFGLADLSTHEELHDRIVKKGGIRSLTELLKRSQDVEAQRFAALAIANCASAVFTRVQMEIVGL 264
            M++VLEALIA+GRRV++P+EQ+EVAFGLADLSTH E+H  +V+KG +++L  +L+ S D +AQRFAALA+ N A+    R+ +   G+
Sbjct:   24 MSRVLEALIARGRRVRKPKEQREVAFGLADLSTHPEIHVNMVRKGTVKTLMHILETSGDADAQRFAALALGNVAATTENRIPIAEEGV 111
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BLAST of mRNA_P-wetherbeei_contig1796.2.1 vs. uniprot
Match: K0RWP8_THAOC (Vacuolar protein 8 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RWP8_THAOC)

HSP 1 Score: 92.4 bits (228), Expect = 7.460e-17
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    1 MAKVLEALIAKGRRVKRPREQKEVAFGLADLSTHEELHDRIVKKGGIRSLTELLKRSQDVEAQRFAALAIANCASAVFTRVQMEIVGLGGI-EALI 285
            MA VLE+L+A+GRRV+  R+Q+EV FGLADLST + +HDR+V+KGGI +L+ LL  +QD EAQ+FAAL IAN +S+    +  EIV L G+ E LI
Sbjct:   65 MASVLESLVARGRRVRNYRDQREVCFGLADLSTDQSVHDRLVRKGGISTLSNLLATAQDAEAQQFAALGIANTSSS--RALCEEIVQLDGLAEGLI 158
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BLAST of mRNA_P-wetherbeei_contig1796.2.1 vs. uniprot
Match: A0A421FVK0_9STRA (Vacuolar protein 8 n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FVK0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.760e-14
Identity = 49/99 (49.49%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    1 MAKVLEALIAKGRRVKRPREQKEVAFGLADLSTHEELHDRIVKKGGIRSLTELLKRSQDVEAQRFAALAIANCASAVFTRVQMEIVGLGGIEALIGLLK 297
            M+KVLE LIA+GRR ++P EQ++VAF LA++ST+ ELHD++V KG I++L  L+ +S D EA R A L +AN AS   +RV+  IV  G +  L+   K
Sbjct:    1 MSKVLEQLIARGRRERKPTEQRDVAFSLAEISTNAELHDKMVSKGVIKALLALILQSSDAEALRLACLCLANVASCPTSRVR--IVEEGALPPLVNFFK 97
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BLAST of mRNA_P-wetherbeei_contig1796.2.1 vs. uniprot
Match: A0A421GNU9_9STRA (Vacuolar protein 8 n=31 Tax=Phytophthora TaxID=4783 RepID=A0A421GNU9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.810e-14
Identity = 49/99 (49.49%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:    1 MAKVLEALIAKGRRVKRPREQKEVAFGLADLSTHEELHDRIVKKGGIRSLTELLKRSQDVEAQRFAALAIANCASAVFTRVQMEIVGLGGIEALIGLLK 297
            M+KVLE LIA+GRR ++P EQ++VAF LA++ST+ ELHD++V KG I++L  L+ +S D EA R A L +AN AS   +RV+  IV  G +  L+   K
Sbjct:  430 MSKVLEQLIARGRRERKPTEQRDVAFSLAEISTNAELHDKMVSKGVIKALLALILQSSDAEALRLACLCLANVASCPTSRVR--IVEEGALPPLVNFFK 526
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BLAST of mRNA_P-wetherbeei_contig1796.2.1 vs. uniprot
Match: A0A1W0A0C2_9STRA (Vacuolar protein 8 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0C2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.180e-14
Identity = 48/97 (49.48%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    4 AKVLEALIAKGRRVKRPREQKEVAFGLADLSTHEELHDRIVKKGGIRSLTELLKRSQDVEAQRFAALAIANCASAVFTRVQMEIVGLGGIEALIGLL 294
            AKVLE LIA+GRR K+P EQ+EVAF LA++ST+ E H ++++KG +R+L  L++ S D +A RFA L + N +S   T +++ IV  G + AL+GLL
Sbjct:    3 AKVLEQLIARGRREKKPSEQREVAFNLAEISTNPEFHVKMIEKGVVRALLHLIQDSTDDQALRFACLCLGNASSC--TSMRIRIVEEGVLPALVGLL 97
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1796.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT75_ECTSI1.130e-3481.82Vacuolar protein 8 n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A835Z6R1_9STRA2.830e-3478.22Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=3... [more]
A0A8J2SEI2_9STRA1.110e-2771.29Vacuolar protein 8 n=1 Tax=Pelagomonas calceolata ... [more]
A0A2R5GK93_9STRA3.720e-2765.87Vacuolar protein 8 n=1 Tax=Hondaea fermentalgiana ... [more]
A0A7S2P367_9STRA1.910e-1970.37Vacuolar protein 8 n=2 Tax=Leptocylindrus danicus ... [more]
A0A812KVL6_9DINO2.280e-1754.55Vacuolar protein 8 (Fragment) n=5 Tax=Sar TaxID=26... [more]
K0RWP8_THAOC7.460e-1757.29Vacuolar protein 8 n=1 Tax=Thalassiosira oceanica ... [more]
A0A421FVK0_9STRA2.760e-1449.49Vacuolar protein 8 n=1 Tax=Phytophthora kernoviae ... [more]
A0A421GNU9_9STRA2.810e-1449.49Vacuolar protein 8 n=31 Tax=Phytophthora TaxID=478... [more]
A0A1W0A0C2_9STRA5.180e-1449.48Vacuolar protein 8 n=1 Tax=Thraustotheca clavata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1796contigP-wetherbeei_contig1796:1042..2332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FT75
PFAMsArm
Model size981
Max annot lvl2759|Eukaryota
KEGG koko:K08332
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.85e-35
EggNOG OGsKOG0167@1|root,KOG4224@1|root,KOG0167@2759|Eukaryota,KOG4224@2759|Eukaryota
Descriptionnucleus-vacuole junction assembly
Cds size981
COG categoryS
BRITEko00000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186132.0774138-CDS-P-wetherbeei_contig1796:1041..16471683186132.0774138-CDS-P-wetherbeei_contig1796:1041..1647Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1796 1042..1647 -
1683186132.0867982-CDS-P-wetherbeei_contig1796:1834..19601683186132.0867982-CDS-P-wetherbeei_contig1796:1834..1960Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1796 1835..1960 -
1683186132.0948412-CDS-P-wetherbeei_contig1796:2083..23321683186132.0948412-CDS-P-wetherbeei_contig1796:2083..2332Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1796 2084..2332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1796.2.1prot_P-wetherbeei_contig1796.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1796 1042..2332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1796.2.1

>prot_P-wetherbeei_contig1796.2.1 ID=prot_P-wetherbeei_contig1796.2.1|Name=mRNA_P-wetherbeei_contig1796.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=327bp
MAKVLEALIAKGRRVKRPREQKEVAFGLADLSTHEELHDRIVKKGGIRSL
TELLKRSQDVEAQRFAALAIANCASAVFTRVQMEIVGLGGIEALIGLLKA
EDVESGRYAAFALSNIGANANHREQIVSAGGVHALVALACCEDLNAQRQA
LSALRGLCITPAYRVQVVRDGFLDPLVLMARTDELVVLREVAAALNCLSC
MEENKMEIADRAIANVIAMTMCGDIETERHACCAIANLVELPDLHNRLLE
ERGLAPLVALTTSGDANCREEASRALANLAANPDLQQAILREGAMQPMVD
ALGSSEVNCQRFAALGLANLATTVSCQ
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mRNA from alignment at P-wetherbeei_contig1796:1042..2332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1796.2.1 ID=mRNA_P-wetherbeei_contig1796.2.1|Name=mRNA_P-wetherbeei_contig1796.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1291bp|location=Sequence derived from alignment at P-wetherbeei_contig1796:1042..2332- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAAGGTGCTCGAGGCGCTAATCGCCAAGGGTAGGCGAGTGAAACG
GCCGCGGGAGCAGAAGGAGGTCGCGTTTGGCCTGGCCGATCTCTCGACCC
ATGAGGAGCTGCACGACCGCATCGTGAAGAAGGGCGGCATTCGCTCCCTT
ACAGAGCTGCTGAAGCGATCACAGGATGTCGAGGCGCAGCGTTTTGCTGC
CCTCGCCATTGCCAATTGCGCGTCAGCCGTCTTTACGCGCGTCCAAATGG
TCAACGACGGCGCCTTGGAACCACTGCTATCTTTCATAAAAGATGACGAT
GCAGATCTAATAACCAGGCAATACTGCGCCATGGCGGTGGGGAACTTAGC
TGCAGAACCGGAAAATCATGAGGAGATCGTCGGTTTAGGCGGCATCGAGG
CCCTCATCGGACTCTTAAAGGCAGAGGACGTCGAGTCGGGCCGATACGCC
GCGTTTGCGCTCAGCAATATTGGCGCCAATGCCAACCATCGTGAGCAGGT
GACGACTAAGAATTTTGGATGCGGATTTGGCACCTGCATGTTTCCTGGTT
TTTCTGCGGATTCTAAGATCTTAATTTGCCATTTGATTGCGATCAACGTG
CTGCCAGCATGTGTTCCCATCACCGTCGAACTTAAAAGTCAACTTCTATC
TCCCCTGGCCCTTCCTCCTCGTCGCCCTGGCCTAGATTGTCTCGGCGGGC
GGCGTCCACGCGCTCGTGGCGCTGGCGTGCTGCGAGGACCTCAACGCGCA
GCGGCAGGCGCTGTCTGCGCTGCGCGGCCTCTGCATCACCCCGGCCTACC
GCGTCCAGGTGGTGCGGGACGGCTTCCTGGACCCGCTGGTTCTCATGGCG
CGGACCGACGAGCTGGTCGTGCTACGCGAGGTGGCGGCGGCGCTCAACTG
CCTGAGCTGTATGGAGGAGAACAAAATGGAGATCGCCGACCGTGCCATTG
CCAACGTCATCGCCATGACTATGTGCGGCGATATCGAGACGGAGCGCCAC
GCCTGCTGTGCCATCGCCAATCTCGTCGAGCTCCCGGACCTCCACAACCG
CCTGCTGGAGGAGCGCGGCCTGGCGCCGCTCGTCGCTTTGACCACCAGCG
GCGACGCCAACTGCCGAGAGGAGGCGTCGCGGGCGCTGGCGAACCTGGCG
GCGAATCCGGACCTGCAGCAGGCCATCCTGCGTGAGGGGGCCATGCAGCC
GATGGTGGACGCGCTGGGCAGCTCCGAGGTGAACTGCCAGCGGTTCGCGG
CGCTGGGGCTGGCCAATCTGGCGACCACGGTCAGCTGCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1796:1042..2332-

>mRNA_P-wetherbeei_contig1796.2.1 ID=mRNA_P-wetherbeei_contig1796.2.1|Name=mRNA_P-wetherbeei_contig1796.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=981bp|location=Sequence derived from alignment at P-wetherbeei_contig1796:1042..2332- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAAGGTGCTCGAGGCGCTAATCGCCAAGGGTAGGCGAGTGAAACG
GCCGCGGGAGCAGAAGGAGGTCGCGTTTGGCCTGGCCGATCTCTCGACCC
ATGAGGAGCTGCACGACCGCATCGTGAAGAAGGGCGGCATTCGCTCCCTT
ACAGAGCTGCTGAAGCGATCACAGGATGTCGAGGCGCAGCGTTTTGCTGC
CCTCGCCATTGCCAATTGCGCGTCAGCCGTCTTTACGCGCGTCCAAATGG
AGATCGTCGGTTTAGGCGGCATCGAGGCCCTCATCGGACTCTTAAAGGCA
GAGGACGTCGAGTCGGGCCGATACGCCGCGTTTGCGCTCAGCAATATTGG
CGCCAATGCCAACCATCGTGAGCAGATTGTCTCGGCGGGCGGCGTCCACG
CGCTCGTGGCGCTGGCGTGCTGCGAGGACCTCAACGCGCAGCGGCAGGCG
CTGTCTGCGCTGCGCGGCCTCTGCATCACCCCGGCCTACCGCGTCCAGGT
GGTGCGGGACGGCTTCCTGGACCCGCTGGTTCTCATGGCGCGGACCGACG
AGCTGGTCGTGCTACGCGAGGTGGCGGCGGCGCTCAACTGCCTGAGCTGT
ATGGAGGAGAACAAAATGGAGATCGCCGACCGTGCCATTGCCAACGTCAT
CGCCATGACTATGTGCGGCGATATCGAGACGGAGCGCCACGCCTGCTGTG
CCATCGCCAATCTCGTCGAGCTCCCGGACCTCCACAACCGCCTGCTGGAG
GAGCGCGGCCTGGCGCCGCTCGTCGCTTTGACCACCAGCGGCGACGCCAA
CTGCCGAGAGGAGGCGTCGCGGGCGCTGGCGAACCTGGCGGCGAATCCGG
ACCTGCAGCAGGCCATCCTGCGTGAGGGGGCCATGCAGCCGATGGTGGAC
GCGCTGGGCAGCTCCGAGGTGAACTGCCAGCGGTTCGCGGCGCTGGGGCT
GGCCAATCTGGCGACCACGGTCAGCTGCCAG
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