mRNA_P-wetherbeei_contig17951.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17951.2.1
Unique NamemRNA_P-wetherbeei_contig17951.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17951.2.1 vs. uniprot
Match: A0A831YJI2_9PROT (NAD-dependent epimerase/dehydratase family protein (Fragment) n=1 Tax=Caulobacterales bacterium TaxID=2282150 RepID=A0A831YJI2_9PROT)

HSP 1 Score: 97.1 bits (240), Expect = 1.430e-23
Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:   16 LRLIVTGGAGFIGSAVCRLVAGRPGWHVLNIDNLTYAGTLTSLASISGAPDYSFLQADICDSQAMTAAFRDFAPDAI 246
            ++++VTGGAGFIGSAVCRL+ G  G  V+N+D LTYAGTLTS+A I+G+P+YSF+QADI D  A+ A F    PDA+
Sbjct:    1 MKILVTGGAGFIGSAVCRLLVGETGDQVVNVDKLTYAGTLTSVAEIAGSPNYSFVQADIADRAAIKAIFDTHKPDAV 77
[Close]
BLAST of mRNA_P-wetherbeei_contig17951.2.1 vs. uniprot
Match: A0A5B2VA73_9HYPH (dTDP-glucose 4,6-dehydratase n=1 Tax=Salinarimonas soli TaxID=1638099 RepID=A0A5B2VA73_9HYPH)

HSP 1 Score: 97.1 bits (240), Expect = 3.370e-22
Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:   16 LRLIVTGGAGFIGSAVCRLVAGRPGWHVLNIDNLTYAGTLTSLASISGAPDYSFLQADICDSQAMTAAFRDFAPDAI 246
            +RLIVTGGAGFIGSAVCR ++G  G  VLN+D LTYAG L SL S+  A  Y F++ADICD QAM   F++F PD +
Sbjct:    1 MRLIVTGGAGFIGSAVCRFLSGELGHQVLNVDKLTYAGNLASLRSLDSAKTYRFVRADICDEQAMAVLFQEFRPDGV 77
[Close]
BLAST of mRNA_P-wetherbeei_contig17951.2.1 vs. uniprot
Match: UPI00107449AF (dTDP-glucose 4,6-dehydratase n=1 Tax=Terasakiella sp. SH-1 TaxID=2560057 RepID=UPI00107449AF)

HSP 1 Score: 96.7 bits (239), Expect = 4.420e-22
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:   16 LRLIVTGGAGFIGSAVCRLVAGRPGWHVLNIDNLTYAGTLTSLASISGAPDYSFLQADICDSQAMTAAFRDFAPDAI 246
            +++IVTGGAGFIGSAVCRL+    GW+VLNID LTYA  L SL+ I   P Y F Q DICD  A+  AFR+F PDAI
Sbjct:    1 MKVIVTGGAGFIGSAVCRLLVKEKGWYVLNIDKLTYAADLRSLSEIQETPSYQFKQIDICDRLALGQAFREFQPDAI 77
[Close]
BLAST of mRNA_P-wetherbeei_contig17951.2.1 vs. uniprot
Match: A0A0Q7T9B5_9CAUL (dTDP-glucose 4,6-dehydratase n=3 Tax=Caulobacter TaxID=75 RepID=A0A0Q7T9B5_9CAUL)

HSP 1 Score: 95.5 bits (236), Expect = 1.240e-21
Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:   16 LRLIVTGGAGFIGSAVCRLVAGRPGWHVLNIDNLTYAGTLTSLASISGAPDYSFLQADICDSQAMTAAFRDFAPDAI 246
            ++++VTGGAGFIGSAVCRL+ G  G  V+N+D LTYAG+LTS+A +S +PDY F+QAD+ D  AM A F    PDA+
Sbjct:    1 MKILVTGGAGFIGSAVCRLLLGETGDQVVNVDKLTYAGSLTSVAEVSASPDYVFVQADVADRAAMQAVFETHRPDAV 77
[Close]
BLAST of mRNA_P-wetherbeei_contig17951.2.1 vs. uniprot
Match: A0A3C0FJ77_9PROT (dTDP-glucose 4,6-dehydratase (Fragment) n=1 Tax=Thalassospira sp. TaxID=1912094 RepID=A0A3C0FJ77_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 3.150e-21
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:   16 LRLIVTGGAGFIGSAVCRLVAGRPGWHVLNIDNLTYAGTLTSLASISGAPDYSFLQADICDSQAMTAAFRDFAPDAI 246
            +++IVTGGAGFIGSAVCRL+ G  G+ VLNID LTYAG L +LASIS   +Y F   DIC+  A+   F +F PDA+
Sbjct:    1 MKVIVTGGAGFIGSAVCRLMTGLKGYEVLNIDKLTYAGDLRTLASISSRDNYHFAHQDICNRDAIVKLFDEFQPDAV 77
[Close]
BLAST of mRNA_P-wetherbeei_contig17951.2.1 vs. uniprot
Match: A0A2P5LT75_9HYPH (dTDP-glucose 4,6-dehydratase n=1 Tax=Methylobacterium sp. TaxID=409 RepID=A0A2P5LT75_9HYPH)

HSP 1 Score: 94.4 bits (233), Expect = 3.270e-21
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:   16 LRLIVTGGAGFIGSAVCRLVAGRPGWHVLNIDNLTYAGTLTSLASISGAPDYSFLQADICDSQAMTAAFRDFAPDAI 246
            +R++VTGGAGFIGSAVCR +    G  VLN+D LTYAG L SL +I+ AP YSF QADICD++ M A F +F PDA+
Sbjct:    1 MRVLVTGGAGFIGSAVCRYLVSDCGDTVLNVDKLTYAGNLASLNAIANAPGYSFAQADICDTERMRALFAEFRPDAV 77
[Close]
BLAST of mRNA_P-wetherbeei_contig17951.2.1 vs. uniprot
Match: A0A2S6MZZ1_9HYPH (dTDP-glucose 4,6-dehydratase n=1 Tax=Rhodoblastus sphagnicola TaxID=333368 RepID=A0A2S6MZZ1_9HYPH)

HSP 1 Score: 94.0 bits (232), Expect = 4.660e-21
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:   16 LRLIVTGGAGFIGSAVCRLVAGRPGWHVLNIDNLTYAGTLTSLASISGAPDYSFLQADICDSQAMTAAFRDFAPDAI 246
            +R++VTGGAGFIGSA+CR + G  G  VLN+D LTYAG L SL  I+  P+Y FLQADICD  A+ AAF  F PD +
Sbjct:    1 MRILVTGGAGFIGSALCRYLVGEAGATVLNVDKLTYAGNLASLREIAQNPNYHFLQADICDRAALDAAFAQFQPDGV 77
[Close]
BLAST of mRNA_P-wetherbeei_contig17951.2.1 vs. uniprot
Match: A0A7W6P1R9_9HYPH (dTDP-glucose 4,6-dehydratase n=1 Tax=Rhizobium borbori TaxID=485907 RepID=A0A7W6P1R9_9HYPH)

HSP 1 Score: 94.0 bits (232), Expect = 4.660e-21
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:   16 LRLIVTGGAGFIGSAVCRLVAGRPGWHVLNIDNLTYAGTLTSLASISGAPDYSFLQADICDSQAMTAAFRDFAPDAI 246
            +R+ VTGGAGFIGSAV R +  + G+ VLN+D LTYAGTLTSL S+ G P Y FL+ADICD++AM  AF  F PD +
Sbjct:    1 MRVFVTGGAGFIGSAVVRHLVLQKGYDVLNVDKLTYAGTLTSLTSVDGNPLYRFLKADICDARAMAEAFESFKPDRV 77
[Close]
BLAST of mRNA_P-wetherbeei_contig17951.2.1 vs. uniprot
Match: A0A358HPM2_9PROT (dTDP-glucose 4,6-dehydratase n=7 Tax=Thalassospira TaxID=168934 RepID=A0A358HPM2_9PROT)

HSP 1 Score: 93.6 bits (231), Expect = 6.480e-21
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:   16 LRLIVTGGAGFIGSAVCRLVAGRPGWHVLNIDNLTYAGTLTSLASISGAPDYSFLQADICDSQAMTAAFRDFAPDAI 246
            ++++VTGGAGFIGSAVCRL+AG+ G+ VLN+D LTYA  L ++  +S  P+YSF + D+C+ QA+   F DF PDA+
Sbjct:    1 MKVVVTGGAGFIGSAVCRLLAGKKGFEVLNLDKLTYAADLRTVEVVSAFPNYSFAKVDVCNKQAVATVFSDFQPDAV 77
[Close]
BLAST of mRNA_P-wetherbeei_contig17951.2.1 vs. uniprot
Match: A0A2N3KEJ1_9PROT (dTDP-glucose 4,6-dehydratase n=4 Tax=Thalassospira TaxID=168934 RepID=A0A2N3KEJ1_9PROT)

HSP 1 Score: 93.2 bits (230), Expect = 8.740e-21
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:   16 LRLIVTGGAGFIGSAVCRLVAGRPGWHVLNIDNLTYAGTLTSLASISGAPDYSFLQADICDSQAMTAAFRDFAPDAI 246
            +R+IVTGGAGFIGSA+CR + G  GW VLNID LTYA    SLASI GAP Y F+QADI D   ++    D+ PDA+
Sbjct:    1 MRVIVTGGAGFIGSALCRYLVGECGWQVLNIDKLTYAADQRSLASIEGAPGYRFMQADIADGDKISHILDDYQPDAV 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17951.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A831YJI2_9PROT1.430e-2361.04NAD-dependent epimerase/dehydratase family protein... [more]
A0A5B2VA73_9HYPH3.370e-2261.04dTDP-glucose 4,6-dehydratase n=1 Tax=Salinarimonas... [more]
UPI00107449AF4.420e-2262.34dTDP-glucose 4,6-dehydratase n=1 Tax=Terasakiella ... [more]
A0A0Q7T9B5_9CAUL1.240e-2158.44dTDP-glucose 4,6-dehydratase n=3 Tax=Caulobacter T... [more]
A0A3C0FJ77_9PROT3.150e-2158.44dTDP-glucose 4,6-dehydratase (Fragment) n=1 Tax=Th... [more]
A0A2P5LT75_9HYPH3.270e-2161.04dTDP-glucose 4,6-dehydratase n=1 Tax=Methylobacter... [more]
A0A2S6MZZ1_9HYPH4.660e-2159.74dTDP-glucose 4,6-dehydratase n=1 Tax=Rhodoblastus ... [more]
A0A7W6P1R9_9HYPH4.660e-2161.04dTDP-glucose 4,6-dehydratase n=1 Tax=Rhizobium bor... [more]
A0A358HPM2_9PROT6.480e-2154.55dTDP-glucose 4,6-dehydratase n=7 Tax=Thalassospira... [more]
A0A2N3KEJ1_9PROT8.740e-2159.74dTDP-glucose 4,6-dehydratase n=4 Tax=Thalassospira... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17951contigP-wetherbeei_contig17951:1143..1388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog311402.Avi_1491
Preferred namerfbB
PFAMsGDP_Man_Dehyd
Model size246
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00402
KEGG koko:K01710
KEGG ReactionR06513
KEGG Pathwayko00521,ko00523,ko00525,ko01055,ko01130,map00521,map00523,map00525,map01055,map01130
KEGG ModuleM00793
Hectar predicted targeting categorysignal peptide
GOsGO:0000271,GO:0003674,GO:0003824,GO:0005975,GO:0005976,GO:0006629,GO:0008150,GO:0008152,GO:0008460,GO:0008610,GO:0008653,GO:0009058,GO:0009059,GO:0009103,GO:0009987,GO:0016051,GO:0016829,GO:0016835,GO:0016836,GO:0033692,GO:0034637,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0045226,GO:0046379,GO:0071704,GO:1901135,GO:1901137,GO:1901576,GO:1903509
Exons1
Evalue1.46e-21
EggNOG OGsCOG1088@1|root,COG1088@2|Bacteria,1MU5E@1224|Proteobacteria,2TT5T@28211|Alphaproteobacteria,4B78X@82115|Rhizobiaceae
EC4.2.1.46
DescriptionBelongs to the NAD(P)-dependent epimerase dehydratase family. dTDP-glucose dehydratase subfamily
Cds size246
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186131.895382-CDS-P-wetherbeei_contig17951:1142..13881683186131.895382-CDS-P-wetherbeei_contig17951:1142..1388Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17951 1143..1388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17951.2.1prot_P-wetherbeei_contig17951.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17951 1143..1388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17951.2.1

>prot_P-wetherbeei_contig17951.2.1 ID=prot_P-wetherbeei_contig17951.2.1|Name=mRNA_P-wetherbeei_contig17951.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
MSLSALRLIVTGGAGFIGSAVCRLVAGRPGWHVLNIDNLTYAGTLTSLAS
ISGAPDYSFLQADICDSQAMTAAFRDFAPDAI
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mRNA from alignment at P-wetherbeei_contig17951:1143..1388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17951.2.1 ID=mRNA_P-wetherbeei_contig17951.2.1|Name=mRNA_P-wetherbeei_contig17951.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig17951:1143..1388+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTTTGTCCGCCCTGAGATTGATCGTGACCGGAGGCGCCGGCTTCAT
CGGTTCCGCTGTCTGCCGCCTCGTCGCGGGACGCCCCGGCTGGCATGTCC
TCAACATCGACAACCTCACATATGCGGGCACCCTGACCTCGCTGGCCTCG
ATCTCGGGCGCGCCGGATTACAGCTTTCTGCAGGCCGACATTTGCGACAG
CCAGGCGATGACAGCCGCCTTCCGCGACTTTGCCCCCGATGCCATA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17951:1143..1388+

>mRNA_P-wetherbeei_contig17951.2.1 ID=mRNA_P-wetherbeei_contig17951.2.1|Name=mRNA_P-wetherbeei_contig17951.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig17951:1143..1388+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTTTGTCCGCCCTGAGATTGATCGTGACCGGAGGCGCCGGCTTCAT
CGGTTCCGCTGTCTGCCGCCTCGTCGCGGGACGCCCCGGCTGGCATGTCC
TCAACATCGACAACCTCACATATGCGGGCACCCTGACCTCGCTGGCCTCG
ATCTCGGGCGCGCCGGATTACAGCTTTCTGCAGGCCGACATTTGCGACAG
CCAGGCGATGACAGCCGCCTTCCGCGACTTTGCCCCCGATGCCATA
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