mRNA_P-wetherbeei_contig17945.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17945.2.1
Unique NamemRNA_P-wetherbeei_contig17945.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17945.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17945contigP-wetherbeei_contig17945:776..1280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size505
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186131.6742246-UTR-P-wetherbeei_contig17945:775..8551683186131.6742246-UTR-P-wetherbeei_contig17945:775..855Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17945 776..855 -
1683186131.700515-UTR-P-wetherbeei_contig17945:1251..12801683186131.700515-UTR-P-wetherbeei_contig17945:1251..1280Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17945 1252..1280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186131.685079-CDS-P-wetherbeei_contig17945:855..12511683186131.685079-CDS-P-wetherbeei_contig17945:855..1251Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17945 856..1251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17945.2.1prot_P-wetherbeei_contig17945.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17945 856..1251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17945.2.1

>prot_P-wetherbeei_contig17945.2.1 ID=prot_P-wetherbeei_contig17945.2.1|Name=mRNA_P-wetherbeei_contig17945.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
MGGYGGRGSGITPGGSPGMTGGGGGSGMNGGRMNVSGMMGPGGSGGGGGG
VGMNVSRLMGPGGGMMAGGGGMPPPPPMIMGYPPNDLHLRGGGSPMPGAI
LPNYYMSGGVMTPPPGTMAGSMGGAPWQGPM*
back to top

mRNA from alignment at P-wetherbeei_contig17945:776..1280-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17945.2.1 ID=mRNA_P-wetherbeei_contig17945.2.1|Name=mRNA_P-wetherbeei_contig17945.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=505bp|location=Sequence derived from alignment at P-wetherbeei_contig17945:776..1280- (Phaeothamnion wetherbeei SAG_119_79)
TGCCGGACACCGCAGACCGGGGCCATGGCATGGGGGGCTACGGCGGCCGA
GGTAGTGGGATCACGCCTGGAGGCAGCCCGGGTATGACGGGCGGCGGCGG
CGGTAGTGGTATGAACGGCGGCAGAATGAACGTCAGCGGCATGATGGGTC
CCGGTGGCAGCGGCGGCGGCGGCGGCGGGGTGGGCATGAACGTCAGCAGG
CTGATGGGTCCTGGTGGCGGGATGATGGCCGGCGGCGGCGGAATGCCACC
GCCGCCGCCGATGATAATGGGCTACCCGCCCAACGATCTGCATCTGCGGG
GCGGCGGCAGCCCGATGCCCGGGGCCATACTGCCCAACTATTACATGAGC
GGCGGCGTCATGACCCCACCGCCGGGAACCATGGCCGGCAGCATGGGCGG
CGCGCCGTGGCAGGGGCCCATGTGAAGGACGATAAAATTTTGGGGAGGAT
GAACGAAGAGAGAAAGAAAGAAATACTGAACTGGCCCCACCTCCTGGTTG
ACGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17945:776..1280-

>mRNA_P-wetherbeei_contig17945.2.1 ID=mRNA_P-wetherbeei_contig17945.2.1|Name=mRNA_P-wetherbeei_contig17945.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig17945:776..1280- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGGCTACGGCGGCCGAGGTAGTGGGATCACGCCTGGAGGCAGCCC
GGGTATGACGGGCGGCGGCGGCGGTAGTGGTATGAACGGCGGCAGAATGA
ACGTCAGCGGCATGATGGGTCCCGGTGGCAGCGGCGGCGGCGGCGGCGGG
GTGGGCATGAACGTCAGCAGGCTGATGGGTCCTGGTGGCGGGATGATGGC
CGGCGGCGGCGGAATGCCACCGCCGCCGCCGATGATAATGGGCTACCCGC
CCAACGATCTGCATCTGCGGGGCGGCGGCAGCCCGATGCCCGGGGCCATA
CTGCCCAACTATTACATGAGCGGCGGCGTCATGACCCCACCGCCGGGAAC
CATGGCCGGCAGCATGGGCGGCGCGCCGTGGCAGGGGCCCATGTGA
back to top