mRNA_P-wetherbeei_contig1794.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1794.1.1
Unique NamemRNA_P-wetherbeei_contig1794.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1794.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1794contigP-wetherbeei_contig1794:3500..3952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size283
Hectar predicted targeting categorysignal peptide
Exons2
Cds size195
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186131.532787-UTR-P-wetherbeei_contig1794:3499..35851683186131.532787-UTR-P-wetherbeei_contig1794:3499..3585Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1794 3500..3585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186131.543751-CDS-P-wetherbeei_contig1794:3585..37101683186131.543751-CDS-P-wetherbeei_contig1794:3585..3710Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1794 3586..3710 +
1683186131.5609534-CDS-P-wetherbeei_contig1794:3882..39521683186131.5609534-CDS-P-wetherbeei_contig1794:3882..3952Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1794 3883..3952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1794.1.1prot_P-wetherbeei_contig1794.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1794 3586..3952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1794.1.1

>prot_P-wetherbeei_contig1794.1.1 ID=prot_P-wetherbeei_contig1794.1.1|Name=mRNA_P-wetherbeei_contig1794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
MILSALSVYSSMLWTACSRFGRQQEGDTSQGRVGQAANGWARSSCPTSGS
RCGTTPSSVTIKLSS
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mRNA from alignment at P-wetherbeei_contig1794:3500..3952+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1794.1.1 ID=mRNA_P-wetherbeei_contig1794.1.1|Name=mRNA_P-wetherbeei_contig1794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig1794:3500..3952+ (Phaeothamnion wetherbeei SAG_119_79)
CCTGGTTGCAGAGGCATGTGATGTATACCTCGCATACGACGGCGTAGCTG
TGCTTGTGCGTCGGCAGCATCGGCCGCGTGTTCTTAATGATCTTGAGCGC
CTTGTCCGTGTACTCGAGCATGCTTTGGACCGCCTGTTCGAGGTTCGGAC
GGCAGCAAGAAGGTGATACCAGCCAAGGCAGGGTGGGTCAAGCTGCAAAC
GGCTGGGCGAGGTGAGAATGATGAAAAGAAACGGGAACTGGTTGCTGGAA
TACTTCGGTGGCAGGTGCCGCATGCCGTTTGCCTGCCAGAGCGAGAGCAA
ACGGTTTGTCTTGCACTCACGTAAGAGTCTTCGCTCTCAAAGCCGTCCAT
GAGGAGGTAACTCTGCGCATACGCCGCGTACAGGTCCAGTTGCCCCACCA
GCGGGAGCAGGTGCGGCACCACGCCGTCCAGCGTCACAATCAAGCTCTCC
AGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1794:3500..3952+

>mRNA_P-wetherbeei_contig1794.1.1 ID=mRNA_P-wetherbeei_contig1794.1.1|Name=mRNA_P-wetherbeei_contig1794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig1794:3500..3952+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCTTGAGCGCCTTGTCCGTGTACTCGAGCATGCTTTGGACCGCCTG
TTCGAGGTTCGGACGGCAGCAAGAAGGTGATACCAGCCAAGGCAGGGTGG
GTCAAGCTGCAAACGGCTGGGCGAGGTCCAGTTGCCCCACCAGCGGGAGC
AGGTGCGGCACCACGCCGTCCAGCGTCACAATCAAGCTCTCCAGC
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