mRNA_P-wetherbeei_contig17932.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17932.1.3
Unique NamemRNA_P-wetherbeei_contig17932.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17932.1.3 vs. uniprot
Match: D7G618_ECTSI (Putative serine protease-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G618_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 6.220e-37
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:   43 TPCLQYTHKYLVTKGKAPASVAAFKTMLHEAWFDMYSRDHGSLDSSGFEHVFVGESKLGKISGLHNWLQIYKEEKQGRLDYKGYI 297
            TPC++Y H YLV+KG+AP S   FK +LH+ WF MYSR  GS DSSGFEHVFVGESK G+I+GLHNW+Q+Y EEK GRLDY GYI
Sbjct:  207 TPCMRYAHAYLVSKGQAPESETDFKNLLHQTWFAMYSRSRGSDDSSGFEHVFVGESKRGEITGLHNWIQVYSEEKSGRLDYMGYI 291
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BLAST of mRNA_P-wetherbeei_contig17932.1.3 vs. uniprot
Match: A0A7S2UVQ1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVQ1_9STRA)

HSP 1 Score: 116 bits (291), Expect = 8.780e-29
Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:   52 LQYTHKYLVTKGKAPASVAAFKTMLHEAWFDMYSRDHGSLDSSGFEHVFVGESKLGKISGLHNWLQIYKEEKQGRLDYKGYIRARGQRSGSAPP 333
            +QY HK+L  KG APA    F+ +L + WF +Y R+  + DSSGFEHVF+GESK GKI+GLHNWLQ+Y EEK G LDY+GYIR R +  G + P
Sbjct:  170 MQYAHKWLNRKGLAPADGPGFRRLLDQLWFSLYRREVHN-DSSGFEHVFIGESKAGKITGLHNWLQMYNEEKAGNLDYRGYIRPRVRGRGFSEP 262
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BLAST of mRNA_P-wetherbeei_contig17932.1.3 vs. uniprot
Match: A0A6V1R029_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R029_HETAK)

HSP 1 Score: 116 bits (291), Expect = 1.630e-28
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:   31 LLWQTPCLQYTHKYLVTKGKAPASVAAFKTMLHEAWFDMYSRDHGSLDSSGFEHVFVGESKLGKISGLHNWLQIYKEEKQGRLDYKGYI--RARGQRSGSAPP 333
            L+  T  ++Y H YL  KGKAPA  AAFK  L + WF +Y R+  + DSSGFEHVFVGESK G+I+GLHNW+Q+Y EE++G  DY+GYI  R RG R+G   P
Sbjct:  212 LIMATGPMRYCHAYLARKGKAPAQAAAFKQTLSDLWFTLYRRETQN-DSSGFEHVFVGESKHGEITGLHNWIQMYLEEQRGSFDYQGYIYPRVRGGRNGFRHP 313
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BLAST of mRNA_P-wetherbeei_contig17932.1.3 vs. uniprot
Match: A0A7S1U4A5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4A5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.750e-28
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:   43 TPCLQYTHKYLVTKGKAPASVAAFKTMLHEAWFDMYSRDHG-SLDSSGFEHVFVGESKLGKISGLHNWLQIYKEEKQGRLDYKGYIRAR 306
            TP ++Y H YLV    APA V +FK  L + WFDMY R  G   DSSGFEHVF+GE K G+++G HNWLQ Y EE++G +DYKGYIR R
Sbjct:  220 TPVMKYAHAYLVANRLAPADVNSFKQRLRKIWFDMYKRSRGRGDDSSGFEHVFIGEVKNGEVTGFHNWLQFYIEERKGHVDYKGYIRPR 308
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BLAST of mRNA_P-wetherbeei_contig17932.1.3 vs. uniprot
Match: A0A1X7VGW2_AMPQE (Uridylate-specific endoribonuclease n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VGW2_AMPQE)

HSP 1 Score: 110 bits (276), Expect = 1.630e-27
Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:   40 QTPCLQYTHKYLVTKGKAPASVAAFKTMLHEAWFDMYSRDHGSLDSSGFEHVFVGESKLGKISGLHNWLQIYKEEKQGRLDYKGYIR 300
            +T  ++  H YLV+ GK+P  +  FK  L++ WF +Y R  G LDSSGFEHVFVGE++ GKI G HNW+Q Y +EK G +DY+GY+R
Sbjct:  106 ETKVMKRAHDYLVSCGKSPREIIPFKRQLYDIWFKLYRRTRGVLDSSGFEHVFVGETRDGKILGFHNWIQFYLQEKAGNVDYQGYVR 192
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BLAST of mRNA_P-wetherbeei_contig17932.1.3 vs. uniprot
Match: A0A1A8CFS5_9TELE (Uridylate-specific endoribonuclease (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8CFS5_9TELE)

HSP 1 Score: 107 bits (266), Expect = 1.710e-26
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:   40 QTPCLQYTHKYLVTKGKAPASVAAFKTMLHEAWFDMYSRDH-GSLDSSGFEHVFVGESKLGK-ISGLHNWLQIYKEEKQGRLDYKGY 294
            +T  +++THKYLV KG++P+    FK  L + WF +Y RD  G  DS GFEHVFVGE+K G+ I+GLHNW+Q Y +EK G++DYKGY
Sbjct:  106 ETEVMKFTHKYLVKKGQSPSDPTQFKKQLFDIWFRLYHRDRSGGEDSCGFEHVFVGEAKYGREITGLHNWVQFYLQEKLGQVDYKGY 192
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BLAST of mRNA_P-wetherbeei_contig17932.1.3 vs. uniprot
Match: UPI001EAED205 (uridylate-specific endoribonuclease C-like n=1 Tax=Oncorhynchus gorbuscha TaxID=8017 RepID=UPI001EAED205)

HSP 1 Score: 107 bits (266), Expect = 1.920e-26
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:   64 HKYLVTKGKAPASVAAFKTMLHEAWFDMYSRDH-GSLDSSGFEHVFVGESKLGK-ISGLHNWLQIYKEEKQGRLDYKGYIRARGQRS 318
            HKYLV+KG +P+    FK  L+  WF +Y RDH G  DS GFEHVFVGESK GK I+G HNW+Q Y +EK G +DYKGY +A+G R+
Sbjct:   55 HKYLVSKGHSPSDQQQFKRQLYNMWFRLYHRDHSGGEDSCGFEHVFVGESKKGKEITGFHNWVQFYLQEKHGNVDYKGY-KAQGNRN 140
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BLAST of mRNA_P-wetherbeei_contig17932.1.3 vs. uniprot
Match: A0A397FCF0_9STRA (XendoU domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FCF0_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.960e-26
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:   40 QTPCLQYTHKYLVTKGKAPASVAAFKTMLHEAWFDMYSRDHGSLDSSGFEHVFVGESKLGKISGLHNWLQIYKEEKQGRLDYKGYIR 300
            +T  ++Y H +L   GK    + AFK  LH+ WF +Y R+  + DSSGFEHVF+GE K GK+SG HNW+Q+Y EEK GRLDY GYI+
Sbjct:  109 ETKVIKYAHAWLEKNGKFHGDIRAFKRKLHDIWFGLYRREVAN-DSSGFEHVFIGEVKEGKVSGFHNWIQMYLEEKAGRLDYLGYIK 194
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BLAST of mRNA_P-wetherbeei_contig17932.1.3 vs. uniprot
Match: A0A5J4Y531_9CHLO (Poly(U)-specific endoribonuclease-C-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y531_9CHLO)

HSP 1 Score: 110 bits (276), Expect = 2.580e-26
Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:   40 QTPCLQYTHKYLVTKGKAPASVAAFKTMLHEAWFDMYSRDHGSLDSSGFEHVFVGESKLGKISGLHNWLQIYKEEKQGRLDYKGYIRARGQRSGSAPPAA 339
            QT C+QY H+ L+ +  A   V++FK  L++ WF  Y+R+    DSSGFEHVFVGE++ GKI GLHNW+Q   +E+QG+LDYKGYI  R  R G   P A
Sbjct:  107 QTQCMQYVHQILIQQQLADRDVSSFKQQLYQMWFRSYTREVRD-DSSGFEHVFVGEARDGKILGLHNWIQFSNQERQGKLDYKGYIFPRVHRHGCCEPVA 205
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BLAST of mRNA_P-wetherbeei_contig17932.1.3 vs. uniprot
Match: A0A7S2ULC3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2ULC3_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.820e-26
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:   40 QTPCLQYTHKYLVTKG--KAPASVAAFKTMLHEAWFDMYSRDHGSL-DSSGFEHVFVGESKLGKISGLHNWLQIYKEEKQGRLDYKGYIRAR 306
            QT  +Q+ HKY       K PA +A FK +LH  WFD+Y R  G   DSSGFEHVFVGE K G++SG HNW+Q Y EEK+G +DY+GYI+ R
Sbjct:  294 QTAPMQFCHKYCRENAPDKVPADLAGFKKLLHSMWFDLYGRSRGGRPDSSGFEHVFVGEVKNGEVSGFHNWIQFYLEEKKGTVDYRGYIKPR 385
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17932.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G618_ECTSI6.220e-3769.41Putative serine protease-like protein n=2 Tax=Ecto... [more]
A0A7S2UVQ1_9STRA8.780e-2957.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1R029_HETAK1.630e-2856.31Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1U4A5_9STRA6.750e-2858.43Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1X7VGW2_AMPQE1.630e-2752.87Uridylate-specific endoribonuclease n=1 Tax=Amphim... [more]
A0A1A8CFS5_9TELE1.710e-2655.17Uridylate-specific endoribonuclease (Fragment) n=1... [more]
UPI001EAED2051.920e-2658.62uridylate-specific endoribonuclease C-like n=1 Tax... [more]
A0A397FCF0_9STRA1.960e-2654.02XendoU domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A5J4Y531_9CHLO2.580e-2652.00Poly(U)-specific endoribonuclease-C-like n=1 Tax=T... [more]
A0A7S2ULC3_9STRA2.820e-2655.43Hypothetical protein (Fragment) n=2 Tax=Attheya se... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17932contigP-wetherbeei_contig17932:54..1153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G618
PFAMsXendoU
Model size345
Max annot lvl2759|Eukaryota
KEGG koko:K14648
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901363
Exons3
Evalue1.02e-37
EggNOG OGsKOG2849@1|root,KOG2849@2759|Eukaryota
DescriptionPoly(U)-specific
Cds size345
COG categoryP
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186131.323499-CDS-P-wetherbeei_contig17932:53..1281683186131.323499-CDS-P-wetherbeei_contig17932:53..128Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17932 54..128 -
1683186131.3374097-CDS-P-wetherbeei_contig17932:426..5791683186131.3374097-CDS-P-wetherbeei_contig17932:426..579Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17932 427..579 -
1683186131.3517234-CDS-P-wetherbeei_contig17932:1036..11531683186131.3517234-CDS-P-wetherbeei_contig17932:1036..1153Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17932 1037..1153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17932.1.3prot_P-wetherbeei_contig17932.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17932 54..1153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17932.1.3

>prot_P-wetherbeei_contig17932.1.3 ID=prot_P-wetherbeei_contig17932.1.3|Name=mRNA_P-wetherbeei_contig17932.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MLVPLPLIPALLWQTPCLQYTHKYLVTKGKAPASVAAFKTMLHEAWFDMY
SRDHGSLDSSGFEHVFVGESKLGKISGLHNWLQIYKEEKQGRLDYKGYIR
ARGQRSGSAPPAAR*
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mRNA from alignment at P-wetherbeei_contig17932:54..1153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17932.1.3 ID=mRNA_P-wetherbeei_contig17932.1.3|Name=mRNA_P-wetherbeei_contig17932.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1100bp|location=Sequence derived from alignment at P-wetherbeei_contig17932:54..1153- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGTCCCTCTTCCGCTCATCCCTGCGCTCCTTTGGCAGACGCCGTG
CCTGCAGTACACGCACAAGTACCTCGTGACGAAGGGAAAGGCTCCCGCCT
CTGTCGCCGCCTTCAAGGTGGGTCGATTAGGCCCGCCGACAGTCCTCTTC
CTGCTGCGCTGCGAACGCCGATCCTTTTCTGCTACGTTGTGGCCGTCCTT
CTGTACGTCGTCCCTCCCTGCCGCTCCTCCCCCTCTGCGGCCGCTGCAGG
CTCCGCTCTTGTTTGCAGTCGCCTGCCGTAGCTGCCGCGTTCATTGCCGC
CGCTCTGTCGGCTAGCTGTGCTCTTGGTCGCACGTTCCTTTCCCTGCGTT
TGGTGACCACGATTTTCCGTTCCGGTTATGGTCGCTGCCACTCTGCTCCA
TTCGCTTCTCGGCCCTTTCCCGTGCTTTCTATTCGAGGTCCTTCTTTTGT
GCATATCGTCTGTCTTTGTCCCGATCGGTCTTTTTATTACTCTCGTATTT
ATCCAGCATCTTCTGCGTGCGTAAGATGTCACTGACTTTGCATGACATCT
ATCCCTCTACCGACCTGCCGGCAGACGATGCTGCACGAGGCGTGGTTCGA
CATGTATTCGCGGGATCACGGCAGCCTCGACAGCAGCGGCTTTGAGCATG
TCTTCGTCGGGGAGTCCAAGCTCGGAAAGATATCGGGACTGCACAACTGG
CTGCAGATATACAAGGAGGAGAAGCAGGTCGGTGTTTTCGGCGGCGGCGG
TGGCGGCGGCCAATGACAGGACAGTATGGAATCATAATCCGAAATGCGGA
TGTACATTTCCTTTCTGCACGCTTCCTTGCTGTTGCCACTTGACGGCCGA
TCCGATCCGGATTGAATGCTATTAGAACTGGTTCTCAAAGACGGGGAGGA
GCCCCGTTTTGCTTGCCGCCTGTTATTTTGCTCTCCGGCTGGTATTACCC
GTCGTCATCTTCTTCCTTAGTCTCGTACAATGCCGTCCTGCTACAAATCT
TCTTGCTCTGGCTCCCCGTGTCCAGGGCCGCCTCGACTACAAGGGGTACA
TTCGCGCGCGGGGCCAGCGGTCAGGGTCGGCGCCACCGGCAGCAAGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17932:54..1153-

>mRNA_P-wetherbeei_contig17932.1.3 ID=mRNA_P-wetherbeei_contig17932.1.3|Name=mRNA_P-wetherbeei_contig17932.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig17932:54..1153- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGTCCCTCTTCCGCTCATCCCTGCGCTCCTTTGGCAGACGCCGTG
CCTGCAGTACACGCACAAGTACCTCGTGACGAAGGGAAAGGCTCCCGCCT
CTGTCGCCGCCTTCAAGACGATGCTGCACGAGGCGTGGTTCGACATGTAT
TCGCGGGATCACGGCAGCCTCGACAGCAGCGGCTTTGAGCATGTCTTCGT
CGGGGAGTCCAAGCTCGGAAAGATATCGGGACTGCACAACTGGCTGCAGA
TATACAAGGAGGAGAAGCAGGGCCGCCTCGACTACAAGGGGTACATTCGC
GCGCGGGGCCAGCGGTCAGGGTCGGCGCCACCGGCAGCAAGGTGA
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