mRNA_P-wetherbeei_contig17923.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17923.1.1
Unique NamemRNA_P-wetherbeei_contig17923.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17923.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17923contigP-wetherbeei_contig17923:548..1387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1111069.TCCBUS3UF1_19940
PFAMsDUF4384,PEGA
Model size840
Max annot lvl1297|Deinococcus-Thermus
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.000583
EggNOG OGsCOG1470@1|root,COG3895@1|root,COG1470@2|Bacteria,COG3895@2|Bacteria,1WIA5@1297|Deinococcus-Thermus
DescriptionPFAM PEGA domain
Cds size840
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186131.143317-CDS-P-wetherbeei_contig17923:547..13871683186131.143317-CDS-P-wetherbeei_contig17923:547..1387Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17923 548..1387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17923.1.1prot_P-wetherbeei_contig17923.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17923 548..1387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17923.1.1

>prot_P-wetherbeei_contig17923.1.1 ID=prot_P-wetherbeei_contig17923.1.1|Name=mRNA_P-wetherbeei_contig17923.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=280bp
MKATIFTLLLGLSLQAAVSAQPSATLELTSVPSQALIFLDRTMQGKGHVV
LSVPAGKHLLRVAAGDDFEPYTREIDLTPDQPTRLKIQLAPSARRWIQSG
RTLLEQGDAAQAQTYFARSEVRMPVESSWWQGIALWKLGRSQEAVPHFRK
YAQYVTDAPELYLFLGLLHAQGGRSGEAFTAYKTALLQPTVLGPAVLQNL
PEATFDSIKAMGKPSKVEDKVRLAQLYMLKGMKPEALSTIQSAVSDKFGN
WTARDWAKFDPKVPPAKVEEVAPPEDVQK*
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mRNA from alignment at P-wetherbeei_contig17923:548..1387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17923.1.1 ID=mRNA_P-wetherbeei_contig17923.1.1|Name=mRNA_P-wetherbeei_contig17923.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig17923:548..1387- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGCAACCATCTTCACCCTTCTCCTTGGCCTCAGCCTGCAGGCCGC
CGTCAGCGCTCAGCCCTCCGCGACCCTGGAATTAACCTCGGTCCCCTCGC
AAGCGCTCATCTTCCTCGATCGCACGATGCAAGGCAAAGGCCACGTCGTC
CTATCCGTTCCCGCCGGCAAGCATCTCTTGCGCGTTGCCGCCGGCGACGA
CTTCGAGCCCTACACTCGAGAGATCGACCTGACCCCCGATCAGCCCACGC
GGCTGAAAATTCAGCTAGCCCCCAGCGCGCGACGCTGGATCCAGAGCGGC
CGCACGCTCCTCGAGCAAGGAGACGCCGCCCAGGCCCAGACCTATTTTGC
GCGCTCGGAAGTCCGCATGCCCGTAGAATCGTCCTGGTGGCAGGGCATCG
CGCTCTGGAAGCTGGGCCGCTCGCAAGAGGCCGTGCCCCATTTCCGCAAG
TATGCCCAGTATGTGACGGACGCCCCCGAGCTCTACCTGTTCCTGGGCCT
GTTGCACGCTCAGGGTGGGCGATCGGGCGAAGCCTTCACCGCGTATAAGA
CAGCGCTGCTTCAACCGACGGTTCTGGGACCTGCGGTTCTCCAAAATCTC
CCCGAGGCCACCTTTGACTCCATCAAAGCTATGGGCAAACCCAGCAAGGT
CGAAGACAAGGTGCGCCTGGCCCAACTCTACATGCTCAAGGGAATGAAGC
CGGAAGCTCTGTCCACGATCCAGAGCGCCGTGTCCGATAAATTCGGCAAC
TGGACGGCGCGCGACTGGGCAAAATTCGATCCCAAGGTGCCCCCGGCCAA
GGTCGAGGAAGTCGCCCCTCCGGAAGACGTCCAAAAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17923:548..1387-

>mRNA_P-wetherbeei_contig17923.1.1 ID=mRNA_P-wetherbeei_contig17923.1.1|Name=mRNA_P-wetherbeei_contig17923.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig17923:548..1387- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGCAACCATCTTCACCCTTCTCCTTGGCCTCAGCCTGCAGGCCGC
CGTCAGCGCTCAGCCCTCCGCGACCCTGGAATTAACCTCGGTCCCCTCGC
AAGCGCTCATCTTCCTCGATCGCACGATGCAAGGCAAAGGCCACGTCGTC
CTATCCGTTCCCGCCGGCAAGCATCTCTTGCGCGTTGCCGCCGGCGACGA
CTTCGAGCCCTACACTCGAGAGATCGACCTGACCCCCGATCAGCCCACGC
GGCTGAAAATTCAGCTAGCCCCCAGCGCGCGACGCTGGATCCAGAGCGGC
CGCACGCTCCTCGAGCAAGGAGACGCCGCCCAGGCCCAGACCTATTTTGC
GCGCTCGGAAGTCCGCATGCCCGTAGAATCGTCCTGGTGGCAGGGCATCG
CGCTCTGGAAGCTGGGCCGCTCGCAAGAGGCCGTGCCCCATTTCCGCAAG
TATGCCCAGTATGTGACGGACGCCCCCGAGCTCTACCTGTTCCTGGGCCT
GTTGCACGCTCAGGGTGGGCGATCGGGCGAAGCCTTCACCGCGTATAAGA
CAGCGCTGCTTCAACCGACGGTTCTGGGACCTGCGGTTCTCCAAAATCTC
CCCGAGGCCACCTTTGACTCCATCAAAGCTATGGGCAAACCCAGCAAGGT
CGAAGACAAGGTGCGCCTGGCCCAACTCTACATGCTCAAGGGAATGAAGC
CGGAAGCTCTGTCCACGATCCAGAGCGCCGTGTCCGATAAATTCGGCAAC
TGGACGGCGCGCGACTGGGCAAAATTCGATCCCAAGGTGCCCCCGGCCAA
GGTCGAGGAAGTCGCCCCTCCGGAAGACGTCCAAAAATAA
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