mRNA_P-wetherbeei_contig17912.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17912.1.1
Unique NamemRNA_P-wetherbeei_contig17912.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17912.1.1 vs. uniprot
Match: UPI001C3C3B25 (peptidylprolyl isomerase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C3B25)

HSP 1 Score: 268 bits (685), Expect = 3.450e-90
Identity = 125/148 (84.46%), Postives = 134/148 (90.54%), Query Frame = 1
Query:   52 IETPAGEIHLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIHDFMIQGGCPKGTGTGGPGYNFTDEINDQKLVNGVLAMANAGPNTNGSQFFIITAAATPWLDGAHTGFGRVSGGEDVVGALGTIPTGPGDRPREPQTITTIRIEEG 495
            +ET AGEI +ELWPDKAPQTVGNFVGLA+QG+YD  VFHR+IHDFMIQGGCPKGTGTGGPGY+F DEIND+KLV GVLAMANAGPNTNGSQFFIITAAATPWLDGAHTGFGRV  G DVV  LGT PTGPGDRPRE Q +TT+RIEEG
Sbjct:    1 METSAGEIRIELWPDKAPQTVGNFVGLAQQGYYDDLVFHRIIHDFMIQGGCPKGTGTGGPGYDFEDEINDEKLVKGVLAMANAGPNTNGSQFFIITAAATPWLDGAHTGFGRVVDGMDVVETLGTTPTGPGDRPRETQRLTTVRIEEG 148          
BLAST of mRNA_P-wetherbeei_contig17912.1.1 vs. uniprot
Match: UPI0003B7B625 (peptidylprolyl isomerase n=1 Tax=Patulibacter americanus TaxID=588672 RepID=UPI0003B7B625)

HSP 1 Score: 214 bits (545), Expect = 8.380e-69
Identity = 101/150 (67.33%), Postives = 116/150 (77.33%), Query Frame = 1
Query:   43 SAVIETPAGEIHLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIHDFMIQGGCPKGTGTGGPGYNFTDEINDQKLVNGVLAMANAGPNTNGSQFFIITAAATPWLDGAHTGFGRVSGGEDVVGALGTIPTGPGDRPREPQTITTIRIEE 492
            +A I T  G++  EL+   AP+TV NF  LA+ GFYDG +FHRVI DFMIQGGCP GTGTGGPGY F DEIN+ K+V G LAMANAGPNTNGSQFFI+TA ATPWLDG HT FG+VSGGEDVV  +GT  TGPGDRP  P  I ++ IE+
Sbjct:    3 TATISTSEGDVAFELFDADAPKTVENFKKLAKDGFYDGLIFHRVIPDFMIQGGCPNGTGTGGPGYQFEDEINEHKIVRGTLAMANAGPNTNGSQFFIVTADATPWLDGKHTAFGQVSGGEDVVQKIGTTQTGPGDRPVTPIEIRSVTIED 152          
BLAST of mRNA_P-wetherbeei_contig17912.1.1 vs. uniprot
Match: UPI00047B54D5 (peptidylprolyl isomerase n=1 Tax=Patulibacter minatonensis TaxID=298163 RepID=UPI00047B54D5)

HSP 1 Score: 207 bits (527), Expect = 4.600e-66
Identity = 98/149 (65.77%), Postives = 115/149 (77.18%), Query Frame = 1
Query:   43 SAVIETPAGEIHLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIHDFMIQGGCPKGTGTGGPGYNFTDEINDQKLVNGVLAMANAGPNTNGSQFFIITAAATPWLDGAHTGFGRVSGGEDVVGALGTIPTGPGDRPREPQTITTIRIE 489
            +A I T  G++  EL+   AP+TV NF  L+ +GFYDG +FHRVI DFMIQGGCP+GTGTGGPGY F DEIN+ K+V G LAMANAGPNTNGSQFFI+TA ATPWLDG HT FG+V+ GEDVV  +GT PT  GDRP  P  I +I+IE
Sbjct:    3 TATISTSEGDVVFELFDADAPKTVQNFKDLSGKGFYDGLIFHRVIADFMIQGGCPQGTGTGGPGYEFEDEINEHKIVRGTLAMANAGPNTNGSQFFIVTADATPWLDGKHTAFGQVTAGEDVVQRIGTTPTAAGDRPVTPIEIRSIKIE 151          
BLAST of mRNA_P-wetherbeei_contig17912.1.1 vs. uniprot
Match: H0EA10_9ACTN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Patulibacter medicamentivorans TaxID=1097667 RepID=H0EA10_9ACTN)

HSP 1 Score: 207 bits (526), Expect = 5.550e-66
Identity = 99/145 (68.28%), Postives = 109/145 (75.17%), Query Frame = 1
Query:   58 TPAGEIHLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIHDFMIQGGCPKGTGTGGPGYNFTDEINDQKLVNGVLAMANAGPNTNGSQFFIITAAATPWLDGAHTGFGRVSGGEDVVGALGTIPTGPGDRPREPQTITTIRIEE 492
            T  G++  EL+   AP+TV NF  LA  GFYDG +FHRVI DFMIQGGCP GTGTGGPGY F DEIND K+V G LAMANAGPNTNGSQFFI+T  ATPWLDG HT FGRV GGEDVV  +GT PTGP DRP  P  I +I I +
Sbjct:    3 TSEGDVVFELFDADAPKTVENFKKLANDGFYDGLIFHRVIADFMIQGGCPNGTGTGGPGYEFEDEINDHKIVRGTLAMANAGPNTNGSQFFIVTTDATPWLDGKHTNFGRVVGGEDVVQRIGTTPTGPQDRPVTPIEIRSITITD 147          
BLAST of mRNA_P-wetherbeei_contig17912.1.1 vs. uniprot
Match: A0A538EQV9_9ACTN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538EQV9_9ACTN)

HSP 1 Score: 205 bits (522), Expect = 2.650e-65
Identity = 96/150 (64.00%), Postives = 111/150 (74.00%), Query Frame = 1
Query:   43 SAVIETPAGEIHLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIHDFMIQGGCPKGTGTGGPGYNFTDEINDQKLVNGVLAMANAGPNTNGSQFFIITAAATPWLDGAHTGFGRVSGGEDVVGALGTIPTGPGDRPREPQTITTIRIEE 492
            +A + T AG + +EL+ D AP+TVGNF  LA  GFYDG +FHRVI DFMIQGGCP+GTGTGGPGY F DEIN  K+V G LAMANAGPNTNGSQFFI+T  A PWLDG HT FGRV+ G D V A+   PTG GDRP E Q I  + + +
Sbjct:    3 TATLHTTAGPVEVELFDDDAPKTVGNFRQLAGDGFYDGLIFHRVIKDFMIQGGCPEGTGTGGPGYTFEDEINPHKIVRGALAMANAGPNTNGSQFFIVTTEAAPWLDGKHTVFGRVASGMDAVDAIEATPTGAGDRPVEDQRIERVELSD 152          
BLAST of mRNA_P-wetherbeei_contig17912.1.1 vs. uniprot
Match: A0A538F6Q5_9ACTN (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538F6Q5_9ACTN)

HSP 1 Score: 204 bits (518), Expect = 9.770e-65
Identity = 98/147 (66.67%), Postives = 110/147 (74.83%), Query Frame = 1
Query:   52 IETPAGEIHLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIHDFMIQGGCPKGTGTGGPGYNFTDEINDQKLVNGVLAMANAGPNTNGSQFFIITAAATPWLDGAHTGFGRVSGGEDVVGALGTIPTGPGDRPREPQTITTIRIEE 492
            + T  G I LEL+ D AP+TVGNF  LA  GFYDG +FHRVI DFMIQGGCP+GTGTGGPGY F DEINDQK+V G LAMANAGPNTNGSQFFI+T  A PWLDG HT FGRV+ G D V A+ + PTG GDRP E   I  + + E
Sbjct:    1 MHTNHGPIRLELFDDDAPKTVGNFRKLAGDGFYDGLIFHRVIRDFMIQGGCPQGTGTGGPGYTFEDEINDQKVVRGALAMANAGPNTNGSQFFIVTTDAAPWLDGKHTVFGRVADGMDAVDAIESQPTGAGDRPVEDVVIERVELAE 147          
BLAST of mRNA_P-wetherbeei_contig17912.1.1 vs. uniprot
Match: A0A538A0P6_9ACTN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538A0P6_9ACTN)

HSP 1 Score: 203 bits (517), Expect = 1.530e-64
Identity = 95/149 (63.76%), Postives = 110/149 (73.83%), Query Frame = 1
Query:   46 AVIETPAGEIHLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIHDFMIQGGCPKGTGTGGPGYNFTDEINDQKLVNGVLAMANAGPNTNGSQFFIITAAATPWLDGAHTGFGRVSGGEDVVGALGTIPTGPGDRPREPQTITTIRIEE 492
            A + T AG + LEL+ D AP+TV NF  LA  GFYDG +FHRVI DFMIQGGCP+GTGTGGPGY F DEIN+ K+V G LAMANAGPNTNGSQFFI+T+ A PWLDG HT FG V  G D + A+   PTGP DRP EPQ I  + + +
Sbjct:    4 ATLHTNAGRVTLELFDDDAPKTVENFRKLAGDGFYDGLIFHRVIPDFMIQGGCPEGTGTGGPGYTFDDEINEHKIVRGALAMANAGPNTNGSQFFIVTSEAAPWLDGKHTVFGEVVDGMDAIDAIEGTPTGPSDRPLEPQVIERVELSD 152          
BLAST of mRNA_P-wetherbeei_contig17912.1.1 vs. uniprot
Match: UPI001FEE69A3 (peptidylprolyl isomerase n=1 Tax=Patulibacter sp. SYSU D01012 TaxID=2817381 RepID=UPI001FEE69A3)

HSP 1 Score: 199 bits (507), Expect = 3.020e-63
Identity = 93/130 (71.54%), Postives = 104/130 (80.00%), Query Frame = 1
Query:  100 APQTVGNFVGLARQGFYDGTVFHRVIHDFMIQGGCPKGTGTGGPGYNFTDEINDQKLVNGVLAMANAGPNTNGSQFFIITAAATPWLDGAHTGFGRVSGGEDVVGALGTIPTGPGDRPREPQTITTIRIE 489
            AP+TV NF  L+  GFYDG +FHRVI DFMIQGGCP+GTGTGGPGY F DEIND K+V G LAMANAGPNTNGSQFFI+TA +TPWLDG HT FG+V+ GEDVV  +GT  TGPGDRP  P  I TI +E
Sbjct:    6 APKTVENFKKLSADGFYDGLIFHRVIPDFMIQGGCPQGTGTGGPGYTFEDEINDHKIVRGTLAMANAGPNTNGSQFFIVTAESTPWLDGKHTAFGQVTAGEDVVQRIGTTQTGPGDRPVTPIEIRTISVE 135          
BLAST of mRNA_P-wetherbeei_contig17912.1.1 vs. uniprot
Match: A0A538A0I8_9ACTN (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A538A0I8_9ACTN)

HSP 1 Score: 198 bits (504), Expect = 1.450e-62
Identity = 94/150 (62.67%), Postives = 110/150 (73.33%), Query Frame = 1
Query:   43 SAVIETPAGEIHLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIHDFMIQGGCPKGTGTGGPGYNFTDEINDQKLVNGVLAMANAGPNTNGSQFFIITAAATPWLDGAHTGFGRVSGGEDVVGALGTIPTGPGDRPREPQTITTIRIEE 492
            +A + T AG + +EL  + AP+TV NF  LA   FYDG VFHRVI DFMIQGGCP+GTGTGGPGY F DEIN+ K+V G +AMAN+GP+TNGSQFFI+T  A PWLDG HT FGRV+ G D V A+   PTG GDRP EPQ I  I + E
Sbjct:    3 NATLHTNAGPVTVELHDEAAPKTVANFRKLAADSFYDGLVFHRVIPDFMIQGGCPQGTGTGGPGYTFEDEINEHKVVRGAVAMANSGPDTNGSQFFIVTTEAAPWLDGKHTVFGRVTDGMDAVDAIEAAPTGAGDRPLEPQLIERIELSE 152          
BLAST of mRNA_P-wetherbeei_contig17912.1.1 vs. uniprot
Match: UPI0004029027 (peptidylprolyl isomerase n=1 Tax=Solirubrobacter sp. URHD0082 TaxID=1298857 RepID=UPI0004029027)

HSP 1 Score: 198 bits (504), Expect = 1.450e-62
Identity = 94/149 (63.09%), Postives = 109/149 (73.15%), Query Frame = 1
Query:   46 AVIETPAGEIHLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIHDFMIQGGCPKGTGTGGPGYNFTDEINDQKLVNGVLAMANAGPNTNGSQFFIITAAATPWLDGAHTGFGRVSGGEDVVGALGTIPTGPGDRPREPQTITTIRIEE 492
            A + T  GEI  EL+ + AP+TVGNF  LAR GFYDG  FHR+I DFMIQGGCP+GTGTGGPGY F DEIN  K+V G LAMANAGPNTNGSQFFI+T    PWLDG HT FG+V+GG DVV  L ++PT   DRPRE   I  + + +
Sbjct:    4 ATMTTNHGEIIFELFDEDAPKTVGNFRKLARDGFYDGLTFHRIISDFMIQGGCPEGTGTGGPGYTFEDEINQHKIVRGALAMANAGPNTNGSQFFIVTVGQAPWLDGKHTVFGKVTGGMDVVDKLESLPTDGRDRPREDARIDKLEVTD 152          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17912.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3C3B253.450e-9084.46peptidylprolyl isomerase n=1 Tax=Miltoncostaea oce... [more]
UPI0003B7B6258.380e-6967.33peptidylprolyl isomerase n=1 Tax=Patulibacter amer... [more]
UPI00047B54D54.600e-6665.77peptidylprolyl isomerase n=1 Tax=Patulibacter mina... [more]
H0EA10_9ACTN5.550e-6668.28Peptidyl-prolyl cis-trans isomerase n=1 Tax=Patuli... [more]
A0A538EQV9_9ACTN2.650e-6564.00Peptidyl-prolyl cis-trans isomerase n=1 Tax=Actino... [more]
A0A538F6Q5_9ACTN9.770e-6566.67Peptidyl-prolyl cis-trans isomerase n=2 Tax=Actino... [more]
A0A538A0P6_9ACTN1.530e-6463.76Peptidyl-prolyl cis-trans isomerase n=1 Tax=Actino... [more]
UPI001FEE69A33.020e-6371.54peptidylprolyl isomerase n=1 Tax=Patulibacter sp. ... [more]
A0A538A0I8_9ACTN1.450e-6262.67Peptidyl-prolyl cis-trans isomerase n=2 Tax=Actino... [more]
UPI00040290271.450e-6263.09peptidylprolyl isomerase n=1 Tax=Solirubrobacter s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17912contigP-wetherbeei_contig17912:49..546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1122939.ATUD01000001_gene105
PFAMsPro_isomerase
Model size498
Max annot lvl84995|Rubrobacteria
KEGG koko:K03768
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.37e-69
EggNOG OGsCOG0652@1|root,COG0652@2|Bacteria,2IFUE@201174|Actinobacteria,4CQGA@84995|Rubrobacteria
EC5.2.1.8
DescriptionPPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Cds size498
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186130.8451498-CDS-P-wetherbeei_contig17912:48..5461683186130.8451498-CDS-P-wetherbeei_contig17912:48..546Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17912 49..546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17912.1.1prot_P-wetherbeei_contig17912.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17912 49..546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17912.1.1

>prot_P-wetherbeei_contig17912.1.1 ID=prot_P-wetherbeei_contig17912.1.1|Name=mRNA_P-wetherbeei_contig17912.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MPDLPAPADPSTSYSAVIETPAGEIHLELWPDKAPQTVGNFVGLARQGFY
DGTVFHRVIHDFMIQGGCPKGTGTGGPGYNFTDEINDQKLVNGVLAMANA
GPNTNGSQFFIITAAATPWLDGAHTGFGRVSGGEDVVGALGTIPTGPGDR
PREPQTITTIRIEEG*
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mRNA from alignment at P-wetherbeei_contig17912:49..546-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17912.1.1 ID=mRNA_P-wetherbeei_contig17912.1.1|Name=mRNA_P-wetherbeei_contig17912.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig17912:49..546- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGACCTGCCCGCGCCCGCCGACCCGAGCACCAGCTACTCCGCCGT GATCGAGACACCCGCCGGAGAGATCCACCTGGAGCTCTGGCCGGACAAGG CCCCGCAGACGGTGGGCAACTTTGTCGGCCTCGCCCGACAGGGCTTCTAC GACGGCACGGTCTTCCACCGCGTGATCCACGACTTCATGATCCAGGGTGG CTGCCCCAAGGGCACCGGCACCGGCGGGCCGGGCTACAACTTCACGGACG AGATCAACGACCAGAAGCTCGTGAACGGGGTCCTCGCGATGGCCAACGCC GGCCCCAACACCAACGGGAGCCAGTTCTTCATCATCACCGCGGCGGCCAC CCCTTGGTTGGACGGTGCCCACACCGGCTTCGGACGGGTGAGCGGCGGCG AGGATGTCGTCGGTGCGCTCGGCACGATCCCGACAGGGCCCGGCGATCGC CCGCGCGAGCCCCAGACGATCACCACCATCCGGATCGAGGAGGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17912:49..546-

>mRNA_P-wetherbeei_contig17912.1.1 ID=mRNA_P-wetherbeei_contig17912.1.1|Name=mRNA_P-wetherbeei_contig17912.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig17912:49..546- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGACCTGCCCGCGCCCGCCGACCCGAGCACCAGCTACTCCGCCGT
GATCGAGACACCCGCCGGAGAGATCCACCTGGAGCTCTGGCCGGACAAGG
CCCCGCAGACGGTGGGCAACTTTGTCGGCCTCGCCCGACAGGGCTTCTAC
GACGGCACGGTCTTCCACCGCGTGATCCACGACTTCATGATCCAGGGTGG
CTGCCCCAAGGGCACCGGCACCGGCGGGCCGGGCTACAACTTCACGGACG
AGATCAACGACCAGAAGCTCGTGAACGGGGTCCTCGCGATGGCCAACGCC
GGCCCCAACACCAACGGGAGCCAGTTCTTCATCATCACCGCGGCGGCCAC
CCCTTGGTTGGACGGTGCCCACACCGGCTTCGGACGGGTGAGCGGCGGCG
AGGATGTCGTCGGTGCGCTCGGCACGATCCCGACAGGGCCCGGCGATCGC
CCGCGCGAGCCCCAGACGATCACCACCATCCGGATCGAGGAGGGCTGA
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