mRNA_P-wetherbeei_contig179.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig179.5.1
Unique NamemRNA_P-wetherbeei_contig179.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig179.5.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.510e-7
Identity = 27/55 (49.09%), Postives = 42/55 (76.36%), Query Frame = 2 
Query:  698 KKHMSVLLIVTFLIKNSVFTVVFQTFACDSMDEFDASYLRTDYSISCKTAEHALW 862
            ++H+ VL+  +FL+ ++V T+VFQTFACD++DE   ++LR DYS+ C T EH L+
Sbjct: 1362 RRHVGVLVTASFLVYSTVSTIVFQTFACDTLDELGTTFLRADYSLECYTPEHKLY 1416
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BLAST of mRNA_P-wetherbeei_contig179.5.1 vs. uniprot
Match: A0A6H5JZ56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ56_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 7.100e-7
Identity = 30/51 (58.82%), Postives = 43/51 (84.31%), Query Frame = 2 
Query:  701 KHMSVLLIVTFLIKNSVFTVVFQTFACDSMDEFDASYLRTDYSISCKTAEH 853
            KH++VLL+VTFL+ +SV ++VFQTFAC+S+D+ + SYLR DY I C T++H
Sbjct:  175 KHVTVLLLVTFLVYSSVSSMVFQTFACNSLDDGN-SYLRADYRIFCTTSKH 224
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BLAST of mRNA_P-wetherbeei_contig179.5.1 vs. uniprot
Match: A0A836C6Y5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6Y5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 8.190e-7
Identity = 38/92 (41.30%), Postives = 50/92 (54.35%), Query Frame = 2 
Query:  578 PRAAAATVRRQCAGAYRTGXXXXXXGAVAADASSRWAAAVKKHMSVLLIVTFLIKNSVFTVVFQTFACDSMDEFDASYLRTDYSISCKTAEH 853
            PRA+AA + R    A            VA    S+        + +LL+ TF+I + V TVVFQTFAC+  +   AS+LR DYSISC+T EH
Sbjct:   70 PRASAAVLSRDSFSATL----------VAQRVKSKATRLASADLQLLLVFTFIIFSGVSTVVFQTFACEEFEATGASFLRADYSISCRTPEH 151
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BLAST of mRNA_P-wetherbeei_contig179.5.1 vs. uniprot
Match: D7FM10_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM10_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.630e-6
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 2 
Query:  701 KHMSVLLIVTFLIKNSVFTVVFQTFACDSMDEFDASYLRTDYSISCKTAEH 853
            KH++VLL VTFL+ +SV ++VFQTFACDS+D+ + +YLR DY I C T++H
Sbjct:  795 KHVTVLLFVTFLVYSSVSSMVFQTFACDSLDDGN-NYLRADYRILCTTSKH 844
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BLAST of mRNA_P-wetherbeei_contig179.5.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.880e-6
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = 2 
Query:  698 KKHMSVLLIVTFLIKNSVFTVVFQTFACDSMDEFDASYLRTDYSISCKTAEHALW 862
            ++H+ VL+  +FL+ ++V T+VFQ FACD++DE   ++LR DYS+ C T EH L+
Sbjct: 1657 RRHVGVLVTASFLVYSTVSTIVFQAFACDTLDEQGKTFLRADYSLECYTPEHKLY 1711
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BLAST of mRNA_P-wetherbeei_contig179.5.1 vs. uniprot
Match: A0A835YT01_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT01_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.600e-6
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 2 
Query:  692 AVKKHMSVLLIVTFLIKNSVFTVVFQTFACDSMDEFDASYLRTDYSISC 838
            A++KH +  L +TFL+  +V +++FQTFACD M E D  YLR DYSI C
Sbjct:  185 ALRKHWTAFLALTFLVYGTVSSIIFQTFACDYMQELDTYYLRADYSIQC 233
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BLAST of mRNA_P-wetherbeei_contig179.5.1 vs. uniprot
Match: A0A835Z836_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z836_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.650e-6
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 2 
Query:  692 AVKKHMSVLLIVTFLIKNSVFTVVFQTFACDSMDEFDASYLRTDYSISC 838
            A++KH +  L +TFL+  +V +++FQTFACD M E D  YLR DYSI C
Sbjct:  113 ALRKHWTAFLALTFLVYGTVSSIIFQTFACDYMQELDTYYLRADYSIQC 161
[Close]
BLAST of mRNA_P-wetherbeei_contig179.5.1 vs. uniprot
Match: A0A6H5J7J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.040e-6
Identity = 29/56 (51.79%), Postives = 42/56 (75.00%), Query Frame = 2 
Query:  701 KHMSVLLIVTFLIKNSVFTVVFQTFACDSMDEFDASYLRTDYSISCKTAEHALWEL 868
            KH+S LL++TFLI +SV + VFQTFAC+++D+    YLR DY+I C  A+H  +E+
Sbjct:  814 KHLSALLLLTFLIYSSVSSTVFQTFACETLDD-GIEYLRVDYTIHCTDAKHKAFEV 868
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BLAST of mRNA_P-wetherbeei_contig179.5.1 vs. uniprot
Match: A0A6H5KX12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 6.630e-6
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 2 
Query:  701 KHMSVLLIVTFLIKNSVFTVVFQTFACDSMDEFDASYLRTDYSISCKTAEHALWEL 868
            KH + LL++TFL+ +SV + VFQTFAC+++D+    YLR DY I+CK A H  +E+
Sbjct:  800 KHQAALLLLTFLVYSSVSSTVFQTFACETLDD-GVEYLRADYRINCKDAAHEAFEV 854
[Close]
BLAST of mRNA_P-wetherbeei_contig179.5.1 vs. uniprot
Match: A0A6H5LAD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAD4_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 7.930e-6
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 2 
Query:  701 KHMSVLLIVTFLIKNSVFTVVFQTFACDSMDEFDASYLRTDYSISCKTAEHALWEL 868
            KH + LL +TFL+ +SV + VFQTFAC+++D+ D  YLR DY I C  A+H  +E+
Sbjct:  488 KHQTALLFLTFLVYSSVSSTVFQTFACETLDD-DVEYLRADYRIHCTDAKHKAFEV 542
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig179.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LRF9_ECTSI1.510e-749.09Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JZ56_9PHAE7.100e-758.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C6Y5_9STRA8.190e-741.30Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FM10_ECTSI1.630e-658.82Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
A0A6H5JU65_9PHAE1.880e-647.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YT01_9STRA3.600e-653.06Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z836_9STRA4.650e-653.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5J7J9_9PHAE5.040e-651.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX12_9PHAE6.630e-650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LAD4_9PHAE7.930e-650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig179contigP-wetherbeei_contig179:8397..10367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRF9
PFAMsBeta_helix,Chlam_PMP
Model size1333
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons3
Evalue8.39e-10
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size573
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186130.429989-UTR-P-wetherbeei_contig179:8396..89671683186130.429989-UTR-P-wetherbeei_contig179:8396..8967Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig179 8397..8967 +
1683186130.4690351-UTR-P-wetherbeei_contig179:10178..103671683186130.4690351-UTR-P-wetherbeei_contig179:10178..10367Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig179 10179..10367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186130.439804-CDS-P-wetherbeei_contig179:8967..92541683186130.439804-CDS-P-wetherbeei_contig179:8967..9254Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig179 8968..9254 +
1683186130.4497724-CDS-P-wetherbeei_contig179:9610..96921683186130.4497724-CDS-P-wetherbeei_contig179:9610..9692Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig179 9611..9692 +
1683186130.4593043-CDS-P-wetherbeei_contig179:9974..101781683186130.4593043-CDS-P-wetherbeei_contig179:9974..10178Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig179 9975..10178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig179.5.1prot_P-wetherbeei_contig179.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig179 8968..10178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig179.5.1

>prot_P-wetherbeei_contig179.5.1 ID=prot_P-wetherbeei_contig179.5.1|Name=mRNA_P-wetherbeei_contig179.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=191bp
MPPRAAAATVRRQCAGAYRTGGAAAAVGAVAADASSRWAAAVKKHMSVLL
IVTFLIKNSVFTVVFQTFACDSMDEFDASYLRTDYSISCKTAEHALWELD
ECVPRLCLTGSLVFTMLGSLGRARQRLTELASGIHSADCFKRCHGDNDAG
ALLHRGGQGGRNGARGAVVVLARGAVMWQPGPLRRGGGKS*
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mRNA from alignment at P-wetherbeei_contig179:8397..10367+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig179.5.1 ID=mRNA_P-wetherbeei_contig179.5.1|Name=mRNA_P-wetherbeei_contig179.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1971bp|location=Sequence derived from alignment at P-wetherbeei_contig179:8397..10367+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGGGCCAGGGGCCAGGGGGGGAATACGCGCTTGTGAGCGTCTGCTCGG
TATTTTTACCTCCTGCCGTCCGAAAATGCATACTAGCATATCCTCGAAAG
ATTTGGCAAGAAAGCAGGAAGAAGAGGTGCAACTGGAGGGCAGCCTTTGG
GCCTGGTGAAGGGCGCCGTGGTCGATGGGCCAAGGGAACGCGCACGAAAG
GCGCGAAATCCACCGAGGCCTACGCGGTGAAATGGCTGGAGGGCGACGGC
TCGACCGAGGGTGCCGAGGTGGGAAGGACCCTGCCCTGTGGGCCAAAGAC
AATGCAGATGCCATTTCTTCCATTTATTCGTCAGTGCCACTAGCTCGATA
AATATTGGCGGTACCTCGCCCCGAGCGAGATATCGACGCCTCTGCTCCCA
GTTTGTACCTTGCCAGCCTTGCCACCGTGCTCATCGTAATAACAACGGTT
ATACTTTCGTTGAGTTGCTTCAATAGCTTGTCTATAATGTTCACCCAGAC
CTCGCTATAATAAGAGAATGACTGATATGAGTGTTTAAAACCCTGCCATC
TTGTTATGCTGGGATAGCACGATGCCGCCGAGGGCTGCGGCGGCCACAGT
GCGACGACAGTGCGCTGGCGCTTATAGAACGGGGGGCGCGGCAGCGGCGG
TGGGAGCAGTTGCAGCGGACGCGTCGTCCCGCTGGGCGGCTGCCGTCAAG
AAACACATGAGCGTGCTGCTGATCGTCACATTTCTCATCAAGAATTCTGT
CTTCACGGTCGTCTTCCAGACCTTTGCGTGCGACTCGATGGATGAGTTCG
ACGCTTCGTATTTGCGCACGGACTACAGCATCTCCTGCAAGACAGCCGAA
CACGCGCTGTACGTGATCTGTGCCGCCTTTGGTCGTTGTCTATCCCGTTG
GCATTCCCCTATTCTATTCGTGACTGCTGTCGCGTGTCCGCGACCGCCTC
GTCGTCGAAGTACCAACAGTGGAAGCCGGCGTCGCCGCTGCCCGTGGCGG
CGCCAGGAGCAGCGGCGGCATCGCAGAAAACAATTCCTGTGGCGGCCCTA
CTAGCCCGGCCGCTTCTGGTGTGTTGCTTGTTTCTTTCTTTGCCTGTTTT
TGCGTGCAGCAAGCGGTTTGACGGCTTTATGCCAGTGTTATAAGATAGAG
AAGAAGGCTTTCATTCTCACAGTTTCTTCTACCCGATCGCTTTTGCTTCG
TGACGAAGTCGCAGGTGGGAGCTGGACGAGTGCGTACCTCGGCTCTGTCT
CACCGGCTCCCTAGTTTTCACTATGCTCGGCTCATTGGGTCGAGCGGTAC
GTTAAACGCTGCATAGACGGAGCTCTGGGTTTGTCGTTCACTCACTCTTA
TCGTTGTAAAGCTCGAGGGGACGCAGGTTCAGCACTTTTTCGCTGCTCAA
TCCCCGACGGCACGTCTTCCCTGGCTGACTTTCCCTTTCCTCTTTGTCGG
GGCTGCCCGCACTTCACGTACTACGCGCCGCACGCCGATCCCGTAGACGC
CAACCTTTACCGGCTTTGGTTCATCACCGTTTTTTGCAGCACATTCTTCG
CCCTCACGATCAAATCCGATGCGAACAGCGGCAGAGACTCACAGAGCTGG
CAAGCGGAATCCATTCTGCTGATTGTTTTAAACGTTGTCATGGTGACAAT
GACGCTGGTGCATTGCTTCATCGTGGCGGTCAAGGTGGACGCAACGGTGC
GCGGGGAGCTGTCGTCGTACTGGCTCGCGGCGCGGTTATGTGGCAACCGG
GACCCCTCCGCAGGGGCGGCGGCAAAAGCTGAGAGTGCGGTGGCGGTGGG
GGCAGCGGTGCTTGCGGAAAAAGTGGTTTGCAGCAGCGATGGCGAGGAAC
AAATGGATAAAAAGCAAATGGACAGAGGTTCGACTAGGTGGCGCAGTGGC
GGAGGCTGACGCATTGGCAGCTGCGGGCAGCCGCTGCGGCGCGGTGGTTT
ACGTTTCTGGTGGCTGGTGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig179:8397..10367+

>mRNA_P-wetherbeei_contig179.5.1 ID=mRNA_P-wetherbeei_contig179.5.1|Name=mRNA_P-wetherbeei_contig179.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig179:8397..10367+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGAGGGCTGCGGCGGCCACAGTGCGACGACAGTGCGCTGGCGC
TTATAGAACGGGGGGCGCGGCAGCGGCGGTGGGAGCAGTTGCAGCGGACG
CGTCGTCCCGCTGGGCGGCTGCCGTCAAGAAACACATGAGCGTGCTGCTG
ATCGTCACATTTCTCATCAAGAATTCTGTCTTCACGGTCGTCTTCCAGAC
CTTTGCGTGCGACTCGATGGATGAGTTCGACGCTTCGTATTTGCGCACGG
ACTACAGCATCTCCTGCAAGACAGCCGAACACGCGCTGTGGGAGCTGGAC
GAGTGCGTACCTCGGCTCTGTCTCACCGGCTCCCTAGTTTTCACTATGCT
CGGCTCATTGGGTCGAGCGCGGCAGAGACTCACAGAGCTGGCAAGCGGAA
TCCATTCTGCTGATTGTTTTAAACGTTGTCATGGTGACAATGACGCTGGT
GCATTGCTTCATCGTGGCGGTCAAGGTGGACGCAACGGTGCGCGGGGAGC
TGTCGTCGTACTGGCTCGCGGCGCGGTTATGTGGCAACCGGGACCCCTCC
GCAGGGGCGGCGGCAAAAGCTGA
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