mRNA_P-wetherbeei_contig17893.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: A0A3C0TST5_9PROT (LexA repressor n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TST5_9PROT) HSP 1 Score: 402 bits (1033), Expect = 1.150e-140 Identity = 202/236 (85.59%), Postives = 222/236 (94.07%), Query Frame = 1
Query: 1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGRTRGFSPNVIEGSRSAFTGVSAPANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKYH 708
MLTNKQYELLIYIN+ +RE+GVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLP++ A G R+RGFSPNVIEGSRS F+GV+ PA+A N+++++N+PMIGRIAAGTPIEALED+S +GVPS ML GQH+ALEVQGDSMINAGI DGDIAI++QCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKYH
Sbjct: 1 MLTNKQYELLIYINECLREHGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPDSAAHKG-RSRGFSPNVIEGSRSPFSGVTPPASASNDDSVVNLPMIGRIAAGTPIEALEDKSASIGVPSSMLAGGQHFALEVQGDSMINAGILDGDIAIIRQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKYH 235
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: A0A353LSK7_9PROT (LexA repressor n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LSK7_9PROT) HSP 1 Score: 342 bits (876), Expect = 9.390e-117 Identity = 172/236 (72.88%), Postives = 207/236 (87.71%), Query Frame = 1
Query: 1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGRTRGFSPNVIEGSRSAFTGVSAPANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKYH 708
MLTNKQYELLI+IN+RIRE G+SPSFDEMK+AL+LKSKSGIHRLI+ALEERGFIRRLPNRARALEVLRLP+++AQ G R++GF+PNVI+ SA + ++ ++ IP++G+IAAG PIEALEDRS M+GVP+ +L G H+ALEV+GDSMI AGI DGDIAI+K+CDTAENG IVVALVDGQ+ATLKRLRRKGASIALEPANP+Y+TRI GPDQVAVQGR+VG++R+YH
Sbjct: 1 MLTNKQYELLIFINERIRESGISPSFDEMKEALNLKSKSGIHRLISALEERGFIRRLPNRARALEVLRLPDSVAQFG-RSKGFAPNVIDSDGSARPVPRKQPQSLPDSNVVEIPLLGKIAAGIPIEALEDRSNMIGVPAALLAGGDHFALEVEGDSMITAGILDGDIAIIKRCDTAENGTIVVALVDGQDATLKRLRRKGASIALEPANPDYETRIYGPDQVAVQGRMVGLYRQYH 235
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: UPI001BC73D6D (Transcriptional repressor LexA n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI001BC73D6D) HSP 1 Score: 311 bits (797), Expect = 1.090e-104 Identity = 161/238 (67.65%), Postives = 196/238 (82.35%), Query Frame = 1
Query: 1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGRTRG---FSPNVIEGSRSAFTGVSAPANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
MLT KQYELL +I++R++E GV PSFDEMKDALDL+SKSGIHRLI ALEERGFIRRLPNRARALEV+RLPET+A + G RG FSPNVIEGS V + G N I IP++GRIAAGTPIEA+++RS + VP +ML AG+HYALEV+GDSMI+AGI +GD+A++K+ D A++G IVVALVD +EATLKRLR+KGASIALE ANP Y+TRI GPD+V +QG+LVGI+R+Y
Sbjct: 1 MLTRKQYELLRFIHERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNRARALEVIRLPETVAPAMGSPRGRGGFSPNVIEGSLGKVAKVPSDKEDGGSNRPIAIPVMGRIAAGTPIEAIQNRSHTVHVPPEMLSAGEHYALEVKGDSMIDAGILEGDLALIKKADVADSGDIVVALVDSEEATLKRLRKKGASIALEAANPAYETRIFGPDRVEIQGKLVGIYRRY 238
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: A0A2A4SB33_9HYPH (LexA repressor n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4SB33_9HYPH) HSP 1 Score: 311 bits (796), Expect = 1.660e-104 Identity = 160/240 (66.67%), Postives = 193/240 (80.42%), Query Frame = 1
Query: 1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPE----TMAQSGGRTRGFSPNVIEGSRSAFTGV-SAPANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
MLT KQ+ELL++IN+R++E GV+PSFDEMK+ALDL+SKSGIHRLI ALEERGFIRRLP+RARALE+L+LPE T+ GFSP+VIEGS S + S N+ NEN +N+P++GRIAAGTPIEAL++ S + VP M+G G HYALEV+GDSMI+AGI DGD I+++CDTA NG IVVALV+G EATLKRLRRKG SIALE ANP Y+TRI GPDQV VQGRLVG+ R+Y
Sbjct: 1 MLTRKQHELLMFINERLKETGVAPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLPHRARALEILKLPESSSPTLGHGAPAATGFSPSVIEGSLSKQSSAGSGTFNSANENDAMNVPVMGRIAAGTPIEALQEESHQVSVPLSMMGTGDHYALEVKGDSMIDAGILDGDTVIIQRCDTANNGEIVVALVEGHEATLKRLRRKGGSIALEAANPAYETRIFGPDQVKVQGRLVGLMRRY 240
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: A0A327JVK6_9HYPH (LexA repressor n=1 Tax=Rhodobium orientis TaxID=34017 RepID=A0A327JVK6_9HYPH) HSP 1 Score: 306 bits (783), Expect = 1.420e-102 Identity = 157/238 (65.97%), Postives = 194/238 (81.51%), Query Frame = 1
Query: 1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQ---SGGRTRGFSPNVIEGSRSAFTGVSAPANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
MLT KQYELL++I++R++E GV PSFDEMKDALDL+SKSGIHRLI ALEERGFIRRLPNRARALEV++LPE+++ S GR RGF P+VIEGS + G+ T+ IP++GRIAAGTPIEA++ R+ + VP+D+LGAG+HYALEV+GDSMI AGI DGD ++++ DTA +G I+VALVD +EATLKRLRRKGASIALE ANP Y+TRI GPD+V +QGRLVG+FR Y
Sbjct: 1 MLTPKQYELLMFIHERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNRARALEVIKLPESVSPGLASSGRGRGFQPSVIEGSLGRAPAAAKAGGDGDARTV-TIPVMGRIAAGTPIEAIQHRTHSVPVPADLLGAGEHYALEVRGDSMIEAGILDGDTVVIRRADTANSGDIIVALVDEEEATLKRLRRKGASIALEAANPAYETRIFGPDRVRIQGRLVGLFRSY 237
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: A0A2E5BVK3_9HYPH (LexA repressor n=5 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E5BVK3_9HYPH) HSP 1 Score: 301 bits (770), Expect = 1.350e-100 Identity = 161/240 (67.08%), Postives = 196/240 (81.67%), Query Frame = 1
Query: 1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGR-TRGFSPNVIEGSRSAFTGVSAPAN----AGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
MLT KQ+ELL++IN+RI+E GVSPSFDEMK+ALDL+SKSGIHRLI ALEERGF+RRLP+RARALE+++LPE+ + S GR + GFSP VIEGS +AP N A NE+++ +P++GRIAAGTPIEAL+ S + VP DML G+HYALEV+GDSMI+AGI DGD I+++CDTA NG IVVALVD QEATLKRLRRKG S+ALE ANP Y+TRI GPD+V VQGRLVG+ R+Y
Sbjct: 1 MLTRKQHELLMFINERIKESGVSPSFDEMKEALDLRSKSGIHRLITALEERGFLRRLPHRARALEIVKLPESASPSFGRNSNGFSPAVIEGSLGKER--TAPQNTRPVAANEDSM-PVPVMGRIAAGTPIEALQQESHQVSVPLDMLARGEHYALEVKGDSMIDAGILDGDTVIIERCDTATNGDIVVALVDDQEATLKRLRRKGNSVALEAANPAYETRIFGPDRVKVQGRLVGLMRRY 237
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: A0A2E0IRQ6_9HYPH (LexA repressor n=2 Tax=Ahrensia sp. TaxID=1872419 RepID=A0A2E0IRQ6_9HYPH) HSP 1 Score: 301 bits (770), Expect = 1.390e-100 Identity = 159/243 (65.43%), Postives = 195/243 (80.25%), Query Frame = 1
Query: 1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGRTRGFSPNVIEGSRSAFTGVSAPA--------NAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
MLT KQ +LL++IN+R++E GV PSFDEMK+ALDL SKSGIHRLI ALEERGFIRRLPNRARALEV+RLP+++ +G R RGFSP+VIEGS G APA N + ++I +PM+G+IAAG PI A+E ++ M+ +P+DM+G G+HYALEV+GDSMI AGIFDGD AI+K+ DTA G I+VALVD +EATLKRLRRKGASIALE ANP Y+TRI GPD+V VQGRLVG+ R+Y
Sbjct: 1 MLTRKQLDLLMFINERLKETGVPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNRARALEVIRLPDSLTPAGQR-RGFSPSVIEGS----LGKPAPAXXXXXRASNDSDGGSMIPVPMMGKIAAGVPISAIEHQTRMISLPADMIGKGEHYALEVEGDSMIEAGIFDGDTAIIKKGDTANAGDIIVALVDDEEATLKRLRRKGASIALEAANPAYETRIFGPDRVRVQGRLVGLMRRY 238
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: UPI001BCDD8EC (transcriptional repressor LexA n=1 Tax=Ancylobacter dichloromethanicus TaxID=518825 RepID=UPI001BCDD8EC) HSP 1 Score: 300 bits (768), Expect = 2.210e-100 Identity = 150/235 (63.83%), Postives = 191/235 (81.28%), Query Frame = 1
Query: 1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGRTRGFSPNVIEGSRSAFTGVSAPANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
MLT KQ+ELL++IN+R+++ GV PSF+EMK+ALDL+SKSGIHRLI ALEERGFIRRLPNRARALEV+RLPE Q R F+PNVIEGS V P++ G E ++++P++GRIAAGTPI A++ R +G+P +ML G+HYALEV+GDSMI AGI DGD+A++++CD A G IVVAL+D +EATLKRLRRKGAS+ALE ANP Y+TRI GPD+V +QG+LVG+FR+Y
Sbjct: 1 MLTRKQHELLLFINERLQQDGVPPSFEEMKEALDLRSKSGIHRLITALEERGFIRRLPNRARALEVVRLPED-TQPQRPVRAFAPNVIEGSLGK---VRPPSDDGAERRVVSVPVMGRIAAGTPISAIQSRDHTIGMPPEMLSGGEHYALEVRGDSMIEAGILDGDLALIRKCDAASTGEIVVALIDDEEATLKRLRRKGASVALEAANPAYETRIFGPDRVRIQGKLVGLFRRY 231
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: UPI0018693A2B (transcriptional repressor LexA n=1 Tax=Oricola sp. NBU1457 TaxID=2775868 RepID=UPI0018693A2B) HSP 1 Score: 299 bits (766), Expect = 5.850e-100 Identity = 158/240 (65.83%), Postives = 191/240 (79.58%), Query Frame = 1
Query: 1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGRTRGFSPNVIEGSRSAFTGVSAPANAGN--ENT---IINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
MLT KQ ELL++IN+R++E GV PSFDEMKDALDL SKSGIHRLI ALEERGFIRRLPNRARALEV+RLP+ MA SGGR RGFSP+VIEGS P +NT ++ IP++G+IAAG PI A+E ++ + +P DMLG+G+HYALEV+GDSMI AGIFDGD AI+K+ ++A G I+VALVD +EATLKR RRKGASIALE ANP Y+TRI GPD+V VQGRL+G+ R+Y
Sbjct: 1 MLTRKQLELLMFINERLKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIRLPDNMAPSGGR-RGFSPSVIEGSLGKPQPAPMPKAPARFADNTDGGVVPIPVMGKIAAGVPISAIEHQTRTLSLPPDMLGSGEHYALEVEGDSMIEAGIFDGDTAIIKKGESANAGDIIVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVRVQGRLIGLIRRY 239
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: A0A2N9W200_9HYPH (LexA repressor n=20 Tax=Bacteria TaxID=2 RepID=A0A2N9W200_9HYPH) HSP 1 Score: 298 bits (764), Expect = 1.180e-99 Identity = 153/239 (64.02%), Postives = 193/239 (80.75%), Query Frame = 1
Query: 1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGRTRGFSPNVIEGSRSAFTGVSAP----ANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
MLT KQ+ELL++I++R++E G+ PSFDEMKDALDL SKSGIHRLI ALEERGFIRRL NRARALEVLRLP+++A R FSP+VIEGS P A+ + +TI++IP++GRIAAG PI A+++++ M+G+P DM+G+G+HYALEV+GDSMI+AGIFDGD ++K+ DTA G IVVALVD +EATLKR RRKGASIALE ANP Y+TRI GPD+V VQG+LVG+ R+Y
Sbjct: 1 MLTRKQHELLLFIHERLKETGIPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLANRARALEVLRLPDSIAPGLNAQRKFSPSVIEGSLGRNIAPPRPQSRSADDSSASTIVSIPVMGRIAAGVPISAIQNQTHMIGLPPDMIGSGEHYALEVKGDSMIDAGIFDGDTVVIKRSDTANPGEIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVRVQGKLVGLIRRY 239 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17893.2.1 >prot_P-wetherbeei_contig17893.2.1 ID=prot_P-wetherbeei_contig17893.2.1|Name=mRNA_P-wetherbeei_contig17893.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=237bp MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEEback to top mRNA from alignment at P-wetherbeei_contig17893:603..1313- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17893.2.1 ID=mRNA_P-wetherbeei_contig17893.2.1|Name=mRNA_P-wetherbeei_contig17893.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig17893:603..1313- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17893:603..1313- >mRNA_P-wetherbeei_contig17893.2.1 ID=mRNA_P-wetherbeei_contig17893.2.1|Name=mRNA_P-wetherbeei_contig17893.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig17893:603..1313- (Phaeothamnion wetherbeei SAG_119_79)back to top |