mRNA_P-wetherbeei_contig17874.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17874.1.1
Unique NamemRNA_P-wetherbeei_contig17874.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17874.1.1 vs. uniprot
Match: A0A835Z6J8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J8_9STRA)

HSP 1 Score: 268 bits (684), Expect = 4.690e-83
Identity = 120/157 (76.43%), Postives = 138/157 (87.90%), Query Frame = 1
Query:    1 WTGGAVDGKDALRARCFPHLLSAFRDNVERFGPNDFFVMQKGLKDDAPSPALKSVVALLKLGDWDPDVFYKFRDPILNHVPTAGVKLRKDLCRGIPRVWENYYMLDADKDVAFELGRFYYGIREYESALGFYQHSSRHVGRHHVTFHNMGLCYYSMG 471
            WTGGA + KD  R+R FP+L  AF+ +VE FGPNDFFVMQKGLK+DAPSP+L++VVALLKLGDWDPDVFYKFRD ILN VPT+G+KLRKDLCRG+PRVWENYYMLD DKDVAFE+GRFYYGIR+Y  AL +Y+ SS H+G HHVT HN+GLCYYSMG
Sbjct:  462 WTGGAFEAKDEARSRLFPNLAGAFKYHVEHFGPNDFFVMQKGLKEDAPSPSLRTVVALLKLGDWDPDVFYKFRDVILNQVPTSGLKLRKDLCRGVPRVWENYYMLDKDKDVAFEIGRFYYGIRDYSHALEYYKFSSDHIGEHHVTRHNIGLCYYSMG 618          
BLAST of mRNA_P-wetherbeei_contig17874.1.1 vs. uniprot
Match: D7FPV2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV2_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 1.390e-82
Identity = 124/157 (78.98%), Postives = 137/157 (87.26%), Query Frame = 1
Query:    1 WTGGAVDGKDALRARCFPHLLSAFRDNVERFGPNDFFVMQKGLKDDAPSPALKSVVALLKLGDWDPDVFYKFRDPILNHVPTAGVKLRKDLCRGIPRVWENYYMLDADKDVAFELGRFYYGIREYESALGFYQHSSRHVGRHHVTFHNMGLCYYSMG 471
            WTG A+D KD+ R+  FPHL +AFR NVE+FGPNDFFVMQK +K+DA +P LKSVVALLKLGDWDPDVFYKFRD ILN V TA  KL+KDLCRGIPRVW NYYMLD DKDVAFE+GRFYYGIREYE+ALGFY+ SS  VG+HHVTFHNMGLCYYSMG
Sbjct:  466 WTGEAMDRKDSERSSQFPHLEAAFRTNVEQFGPNDFFVMQKCMKEDAATPTLKSVVALLKLGDWDPDVFYKFRDTILNQVSTAVTKLKKDLCRGIPRVWSNYYMLDKDKDVAFEIGRFYYGIREYENALGFYRDSSESVGQHHVTFHNMGLCYYSMG 622          
BLAST of mRNA_P-wetherbeei_contig17874.1.1 vs. uniprot
Match: A0A6U3RM50_9STRA (Type II protein arginine methyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3RM50_9STRA)

HSP 1 Score: 248 bits (634), Expect = 6.020e-76
Identity = 113/155 (72.90%), Postives = 132/155 (85.16%), Query Frame = 1
Query:    4 TGGAVDGKDALRARCFPHLLSAFRDNVERFGPNDFFVMQKGLKDDAPSPALKSVVALLKLGDWDPDVFYKFRDPILNHVPTAGVKLRKDLCRGIPRVWENYYMLDADKDVAFELGRFYYGIREYESALGFYQHSSRHVGRHHVTFHNMGLCYYSM 468
            T GAV+ +D  RA  FP+L  AFRD+V+RFGPNDFFV+QK LK+DA +PALK+VVALLKLGDWDPDVFYKFRDP+LN  PT G KLR DL RGIPRVWENY++LD DKDVAFE+GRFYYG+R+Y SAL FY+ SS  +G HHVT+HNMGLC+YSM
Sbjct:  443 TDGAVEERDWDRAAAFPNLSIAFRDSVDRFGPNDFFVLQKSLKEDASAPALKAVVALLKLGDWDPDVFYKFRDPLLNQAPTCGAKLRNDLLRGIPRVWENYFVLDRDKDVAFEIGRFYYGVRQYASALRFYKESSESIGEHHVTYHNMGLCHYSM 597          
BLAST of mRNA_P-wetherbeei_contig17874.1.1 vs. uniprot
Match: A0A7S2D5C4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D5C4_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.070e-75
Identity = 112/157 (71.34%), Postives = 128/157 (81.53%), Query Frame = 1
Query:    1 WTGGAVDGKDALRARCFPHLLSAFRDNVERFGPNDFFVMQKGLKDDAPSPALKSVVALLKLGDWDPDVFYKFRDPILNHVPTAGVKLRKDLCRGIPRVWENYYMLDADKDVAFELGRFYYGIREYESALGFYQHSSRHVGRHHVTFHNMGLCYYSMG 471
            W G A+  +   RA   PHL  AF  +V++FGPNDFFV+QK LK+D+P+P LK+V+ALLKLGDWDPDVFYKFRD ILN VPT G KLR DLCRGIPRVW NYYMLD DKDVAFE+GRFYYGIREY +AL +Y  SS  +G+HHVTFHNMGLCYYSMG
Sbjct:  349 WLGDAISDRSDARASTCPHLCQAFSTSVDQFGPNDFFVLQKSLKEDSPAPPLKAVMALLKLGDWDPDVFYKFRDVILNQVPTCGHKLRNDLCRGIPRVWANYYMLDKDKDVAFEIGRFYYGIREYANALEYYTLSSDTIGQHHVTFHNMGLCYYSMG 505          
BLAST of mRNA_P-wetherbeei_contig17874.1.1 vs. uniprot
Match: A0A4D9D744_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D744_9STRA)

HSP 1 Score: 241 bits (614), Expect = 2.370e-74
Identity = 107/157 (68.15%), Postives = 127/157 (80.89%), Query Frame = 1
Query:    1 WTGGAVDGKDALRARCFPHLLSAFRDNVERFGPNDFFVMQKGLKDDAPSPALKSVVALLKLGDWDPDVFYKFRDPILNHVPTAGVKLRKDLCRGIPRVWENYYMLDADKDVAFELGRFYYGIREYESALGFYQHSSRHVGRHHVTFHNMGLCYYSMG 471
            W G   + +   R R FP L +AF   V+ FGPNDFFV+QK +K+D+P+P LK++VALLKLGDWDPDVFYKFR+ ILN VPTAG KLR DLCRG+PRVWE++YMLD DKD+AFE+GRFYYGIREYE ALGFY  SS  +G HHVT HNMGLC+YS+G
Sbjct:  327 WAGCGAESEGEKRMRAFPCLRAAFSSAVDHFGPNDFFVLQKSMKEDSPNPTLKAIVALLKLGDWDPDVFYKFRETILNQVPTAGQKLRNDLCRGVPRVWEHHYMLDRDKDIAFEIGRFYYGIREYERALGFYSLSSTSIGEHHVTCHNMGLCHYSLG 483          
BLAST of mRNA_P-wetherbeei_contig17874.1.1 vs. uniprot
Match: A0A7S3HTN4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTN4_9STRA)

HSP 1 Score: 234 bits (598), Expect = 3.880e-74
Identity = 103/147 (70.07%), Postives = 124/147 (84.35%), Query Frame = 1
Query:   28 DALRARCFPHLLSAFRDNVERFGPNDFFVMQKGLKDDAPSPALKSVVALLKLGDWDPDVFYKFRDPILNHVPTAGVKLRKDLCRGIPRVWENYYMLDADKDVAFELGRFYYGIREYESALGFYQHSSRHVGRHHVTFHNMGLCYYSM 468
            DA RA+ FPHL  AF D+V+ FGPNDFFV+QK LK+D  +P L++VVA+LKLGDWDPDVF+KFRD IL H PT G KLR DLCRGIPRVWENYY+LD DKD+AFE+GRFYYGI++YE+AL +Y+ S+  VG HHVT+HN GLCYYS+
Sbjct:  136 DATRAKNFPHLAQAFHDSVDLFGPNDFFVLQKSLKEDLNNPPLRTVVAMLKLGDWDPDVFFKFRDTILMHAPTCGQKLRNDLCRGIPRVWENYYILDTDKDIAFEIGRFYYGIKDYENALFYYKESTTSVGEHHVTYHNQGLCYYSL 282          
BLAST of mRNA_P-wetherbeei_contig17874.1.1 vs. uniprot
Match: W7TM08_9STRA (Tetratricopeptide repeat family protein n=5 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM08_9STRA)

HSP 1 Score: 241 bits (614), Expect = 5.960e-73
Identity = 107/157 (68.15%), Postives = 128/157 (81.53%), Query Frame = 1
Query:    1 WTGGAVDGKDALRARCFPHLLSAFRDNVERFGPNDFFVMQKGLKDDAPSPALKSVVALLKLGDWDPDVFYKFRDPILNHVPTAGVKLRKDLCRGIPRVWENYYMLDADKDVAFELGRFYYGIREYESALGFYQHSSRHVGRHHVTFHNMGLCYYSMG 471
            W G   + +   R R FP L +AF   V++FGPNDFFV+QK +K+D+P+P LK++VALLKLGDWDPDVFYKFR+ ILN VPTAG KLR DLCRG+PRVWE++YMLD DKD+AFE+GRFYYGIREYE ALGFY  SS  +G HHVT HNMGLC+YS+G
Sbjct:  489 WAGPNAESEGEKRVRAFPCLRAAFSTAVDQFGPNDFFVLQKSMKEDSPNPTLKAIVALLKLGDWDPDVFYKFRETILNQVPTAGQKLRNDLCRGVPRVWEHHYMLDRDKDIAFEIGRFYYGIREYERALGFYSLSSTSIGEHHVTCHNMGLCHYSLG 645          
BLAST of mRNA_P-wetherbeei_contig17874.1.1 vs. uniprot
Match: A0A7S3K0C6_9STRA (Type II protein arginine methyltransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K0C6_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.820e-70
Identity = 103/157 (65.61%), Postives = 121/157 (77.07%), Query Frame = 1
Query:    1 WTGGAVDGKDALRARCFPHLLSAFRDNVERFGPNDFFVMQKGLKDDAPSPALKSVVALLKLGDWDPDVFYKFRDPILNHVPTAGVKLRKDLCRGIPRVWENYYMLDADKDVAFELGRFYYGIREYESALGFYQHSSRHVGRHHVTFHNMGLCYYSMG 471
            WTG  ++     RA  F HL   F D + RFGPNDFFV+QK +K+D+  P LK +VALLKLGDWDPDVFYKFRD ILN  P  G KLR DLCR +PRVW+NYY LD DKDV+FE+GRFYYGIRE+E AL FY+ S+ H+G HHVTFHNMGLC+YS+G
Sbjct:  418 WTGDEMERISCQRALSFSHLCRVFEDEIVRFGPNDFFVLQKSMKEDSQQPTLKGIVALLKLGDWDPDVFYKFRDVILNQAPVCGCKLRNDLCRDLPRVWDNYYSLDKDKDVSFEVGRFYYGIREHEKALQFYRISTEHIGEHHVTFHNMGLCHYSLG 574          
BLAST of mRNA_P-wetherbeei_contig17874.1.1 vs. uniprot
Match: A0A7R9YDE7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDE7_9STRA)

HSP 1 Score: 227 bits (578), Expect = 3.240e-68
Identity = 105/157 (66.88%), Postives = 124/157 (78.98%), Query Frame = 1
Query:    1 WTGGAVDGKDALRARCFPHLLSAFRDNVERFGPNDFFVMQKGLKDDAPSPALKSVVALLKLGDWDPDVFYKFRDPILNHVPTAGVKLRKDLCRGIPRVWENYYMLDADKDVAFELGRFYYGIREYESALGFYQHSSRHVGRHHVTFHNMGLCYYSMG 471
            WTG  ++ +D  RA  +P+L +AF  ++  FGPNDFFVMQK LK+D+  P+LKS+VALLKL D+DPDVF+KFRD ILN + T G KLR DL RGIPRVWENYY+LD DKD+AFE+GRFYYGIR Y  AL FYQ SS  +G HHVTFHNMGLCYYS G
Sbjct:  422 WTGEHLEARDRDRALRWPNLRAAFEQSIVSFGPNDFFVMQKSLKEDSSQPSLKSIVALLKLSDFDPDVFWKFRDTILNALNTCGEKLRADLGRGIPRVWENYYILDKDKDIAFEIGRFYYGIRNYSDALTFYQQSSNEIGEHHVTFHNMGLCYYSEG 578          
BLAST of mRNA_P-wetherbeei_contig17874.1.1 vs. uniprot
Match: F0YMM3_AURAN (Type II protein arginine methyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMM3_AURAN)

HSP 1 Score: 218 bits (554), Expect = 3.010e-65
Identity = 98/157 (62.42%), Postives = 118/157 (75.16%), Query Frame = 1
Query:    1 WTGGAVDGKDALRARCFPHLLSAFRDNVERFGPNDFFVMQKGLKDDAPSPALKSVVALLKLGDWDPDVFYKFRDPILNHVPTAGVKLRKDLCRGIPRVWENYYMLDADKDVAFELGRFYYGIREYESALGFYQHSSRHVGRHHVTFHNMGLCYYSMG 471
            WTG  V+   A R+  FP+L   FRD++  FGPNDFFVMQK +K+D   PALK++VALLKL +WDPDVFYKFRD IL  VPT  +KLR DLCR +P +W N+++LD DKDVAFE+GR YYG+R YE A+ FY  S    G HHVTFHNMGLCYYS+G
Sbjct:  387 WTGNEVERLSAARSIAFPYLCRTFRDSIISFGPNDFFVMQKSMKEDTQRPALKAIVALLKLSNWDPDVFYKFRDVILQQVPTCTIKLRSDLCRNLPYIWANHFILDKDKDVAFEVGRLYYGLRMYEDAVRFYCISVASSGEHHVTFHNMGLCYYSLG 543          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17874.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6J8_9STRA4.690e-8376.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FPV2_ECTSI1.390e-8278.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U3RM50_9STRA6.020e-7672.90Type II protein arginine methyltransferase n=1 Tax... [more]
A0A7S2D5C4_9STRA1.070e-7571.34Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4D9D744_9STRA2.370e-7468.15Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3HTN4_9STRA3.880e-7470.07Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W7TM08_9STRA5.960e-7368.15Tetratricopeptide repeat family protein n=5 Tax=Na... [more]
A0A7S3K0C6_9STRA1.820e-7065.61Type II protein arginine methyltransferase n=1 Tax... [more]
A0A7R9YDE7_9STRA3.240e-6866.88Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0YMM3_AURAN3.010e-6562.42Type II protein arginine methyltransferase n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17874contigP-wetherbeei_contig17874:36..1202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FPV2
PFAMsGFO_IDH_MocA,Methyltransf_28,TPR_2,TPR_8
Model size471
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.28e-83
EggNOG OGs28JR9@1|root,2QS4P@2759|Eukaryota
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186129.7096262-CDS-P-wetherbeei_contig17874:35..2691683186129.7096262-CDS-P-wetherbeei_contig17874:35..269Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17874 36..269 -
1683186129.7245352-CDS-P-wetherbeei_contig17874:965..12021683186129.7245352-CDS-P-wetherbeei_contig17874:965..1202Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17874 966..1202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17874.1.1prot_P-wetherbeei_contig17874.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17874 36..1202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17874.1.1

>prot_P-wetherbeei_contig17874.1.1 ID=prot_P-wetherbeei_contig17874.1.1|Name=mRNA_P-wetherbeei_contig17874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
WTGGAVDGKDALRARCFPHLLSAFRDNVERFGPNDFFVMQKGLKDDAPSP
ALKSVVALLKLGDWDPDVFYKFRDPILNHVPTAGVKLRKDLCRGIPRVWE
NYYMLDADKDVAFELGRFYYGIREYESALGFYQHSSRHVGRHHVTFHNMG
LCYYSMG
back to top

mRNA from alignment at P-wetherbeei_contig17874:36..1202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17874.1.1 ID=mRNA_P-wetherbeei_contig17874.1.1|Name=mRNA_P-wetherbeei_contig17874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1167bp|location=Sequence derived from alignment at P-wetherbeei_contig17874:36..1202- (Phaeothamnion wetherbeei SAG_119_79)
TGGACCGGCGGTGCGGTGGACGGCAAGGACGCGTTGCGGGCGCGGTGCTT CCCACACCTGCTGTCGGCCTTCCGAGACAACGTGGAGCGTTTCGGCCCGA ACGATTTCTTCGTGATGCAGAAGGGGCTAAAGGACGACGCGCCGTCGCCG GCGCTCAAGAGCGTGGTGGCACTGCTCAAGCTCGGGGACTGGGACCCGGA CGTCTTCTACAAGTTCCGTGACCCCATCCTCAACCATGTGAGCGACGGGG CAGAAGCGTTCAGTTTTAGGGAACTATGCTGCTTTGATTTATGAGGCGGC GGGCCGTGTCGCTTGCTTAGTGTGTAGCATGCCCCGTTGAGGGGTCATAG CTTCACTGTCGAAAATGGAGTGCTCTGACCGTGTTCCTTTCGTTTCCTTC TTTAATCTTCTCTAGCGGACGGCCGTTGTGAGCCTGGCTATTGACTGGGC AAAACCGCCGGTTTGAAGGGTCGCCACGCTGCTTTATGTGCTTTCTTTTC CGGTCTCTACATGGAGTGTGCGTTGTCTTGTGTTGTTTTCTTCTTACCCC GGCTTTTAGCTTTTGAGACGTTTTGCGGCGAGCTGGTGTGCGTCCGTGGG TATTTGCATCTTCTTGGTCGATGTCCGTGTTTGTCGAATGTCGAATTCGA TGTGTTATTCCATTCCCTTTCTTTTCCCTTCTCCTCTTTCCCTTCCTGTG CTGGACGGCGCTGGCCGCGCATTGTGTGAATGTAGTTTGTCTTTCCACTG GTTCTTTTCTCCCTGGCTCAACCTTCGCCTTTCCCACACAACCAACCGTT TCCACATAGCTCACTTGGCTTTCAACGAAAGTCACCCCACTCCTCTAACC GTTCTTTTCTAACCGTTTCCAAGCGGGAACCAAACAACCAATCAACCAAA CCAAACCGAACGATGCCTCTTCCTCCATCGTAGGTGCCGACGGCGGGCGT GAAGCTGCGCAAGGACCTCTGCCGCGGCATCCCGCGCGTGTGGGAGAACT ACTACATGCTGGACGCCGACAAGGACGTGGCCTTCGAGCTCGGCCGCTTC TACTACGGCATCCGCGAGTACGAGTCGGCGCTCGGCTTCTACCAGCACTC GTCGCGCCACGTCGGGCGGCACCACGTGACATTCCACAATATGGGTCTCT GCTACTACTCCATGGGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17874:36..1202-

>mRNA_P-wetherbeei_contig17874.1.1 ID=mRNA_P-wetherbeei_contig17874.1.1|Name=mRNA_P-wetherbeei_contig17874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig17874:36..1202- (Phaeothamnion wetherbeei SAG_119_79)
TGGACCGGCGGTGCGGTGGACGGCAAGGACGCGTTGCGGGCGCGGTGCTT
CCCACACCTGCTGTCGGCCTTCCGAGACAACGTGGAGCGTTTCGGCCCGA
ACGATTTCTTCGTGATGCAGAAGGGGCTAAAGGACGACGCGCCGTCGCCG
GCGCTCAAGAGCGTGGTGGCACTGCTCAAGCTCGGGGACTGGGACCCGGA
CGTCTTCTACAAGTTCCGTGACCCCATCCTCAACCATGTGCCGACGGCGG
GCGTGAAGCTGCGCAAGGACCTCTGCCGCGGCATCCCGCGCGTGTGGGAG
AACTACTACATGCTGGACGCCGACAAGGACGTGGCCTTCGAGCTCGGCCG
CTTCTACTACGGCATCCGCGAGTACGAGTCGGCGCTCGGCTTCTACCAGC
ACTCGTCGCGCCACGTCGGGCGGCACCACGTGACATTCCACAATATGGGT
CTCTGCTACTACTCCATGGGT
back to top